mRNA_P-fluviatile_contig8.14648.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14648.1
Unique NamemRNA_P-fluviatile_contig8.14648.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14648.1 vs. uniprot
Match: D8LKY5_ECTSI (PRA1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY5_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 4.940e-86
Identity = 153/181 (84.53%), Postives = 161/181 (88.95%), Query Frame = 2 
Query:  236 MTEASELKDELTVLGQHLQRFFVEDRRPWAEFFGHVEQPKWTQADVKKRVSANFSFFTTNYLMICATCSAFYILRSPGLLLTLLASLCMFLYVFMSRRKTLVVLDVTLGMREKTIAAAVGSLLLLSLTGYIFTLLFSGIVGFTVCLLHATFRPPVARAVRRGGSGGGAPELHGGDGDLEGG 778
            M EASELKDELTVLGQH+ RFFV DRRPWAEFFG VEQPKWTQA+VKKRV+AN SFF TNYLMI AT +A YILRSPGLLLTLLASLCMFLYVFMSRRK LVVLDVTLG REKTIAAAV S+LLLS+TGYIF+L FSGI+G  VCLLHATFRPPVARAVR    GGG PELHGGDGDLEGG
Sbjct:    1 MAEASELKDELTVLGQHMHRFFVADRRPWAEFFGPVEQPKWTQAEVKKRVNANLSFFATNYLMIWATIAAVYILRSPGLLLTLLASLCMFLYVFMSRRKKLVVLDVTLGTREKTIAAAVASMLLLSVTGYIFSLQFSGILGCAVCLLHATFRPPVARAVRNT-RGGGPPELHGGDGDLEGG 180
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BLAST of mRNA_P-fluviatile_contig8.14648.1 vs. uniprot
Match: A0A836CGC4_9STRA (PRA1 family protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.370e-20
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 2 
Query:  314 RPWAEFFGHVEQP-KWTQADVKKRVSANFSFFTTNYLMICATCSAFYILRSPGLLLTLLASLCMFLYVFMSRRKTLVVLDVTLGMRE--KTIAAAVGSLLLLSLTGYIFTLLFSGIVGFTVCLLHATFRPPVARAV 712
            RPWAEF G V  P KWT  D+++R+ AN  FF  NY ++ A  SA+YI+ SPGLLLTLL  L ++  V ++RRK  V ++  + + +  K   A V +++LL   GY+F L ++  +G  VCL HA  RPPVARA+
Sbjct:   21 RPWAEFVGPVAPPPKWTLPDIQRRLVANTRFFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMNGAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRPPVARAL 156
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BLAST of mRNA_P-fluviatile_contig8.14648.1 vs. uniprot
Match: A0A6J1KAU7_CUCMA (PRA1 family protein n=9 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1KAU7_CUCMA)

HSP 1 Score: 57.4 bits (137), Expect = 1.910e-5
Identity = 41/132 (31.06%), Postives = 66/132 (50.00%), Query Frame = 2 
Query:  311 RRPWAEFFGHVEQPK-WTQADVKKRVSANFSFFTTNYLMICATCSAFYILRSPGLLLTLLASLCM--FLYVFMSRRKTLVVLDVTLGMREKTIAAAVGSLLLLSLTGYIFTLLFSGIVGFTVCLLHATFRPP 697
            RRPW+E        +    ++   R+  NFS+F  NY+ +     AF +L  P  LLTLLA L    FLY+F    + LV+   T    E  +   V +++++ LT     L+ + ++GF++  +H  FR P
Sbjct:   47 RRPWSELVDRSSLARPLNLSEAYSRIRKNFSYFRVNYITLLTLVLAFSLLSHPFSLLTLLALLAAWSFLYIFRPSDQPLVIRGRTFSDFETLVGLGVLTVIVVFLTSVGSLLISASMIGFSIVCIHGAFRLP 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKY5_ECTSI4.940e-8684.53PRA1 family protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CGC4_9STRA6.370e-2045.59PRA1 family protein-domain-containing protein n=1 ... [more]
A0A6J1KAU7_CUCMA1.910e-531.06PRA1 family protein n=9 Tax=Cucurbitaceae TaxID=36... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3520822..3524976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionPrenylated rab acceptor PRA1
Ec32 orthologEc-11_006030.1
Exons4
Model size2688
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14648.1prot_P-fluviatile_contig8.14648.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3522534..3524741 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.900146-UTR-P-fluviatile_contig8:3520821..35225331622817260.900146-UTR-P-fluviatile_contig8:3520821..3522533Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3520822..3522533 -
1693571786.8095162-UTR-P-fluviatile_contig8:3520821..35225331693571786.8095162-UTR-P-fluviatile_contig8:3520821..3522533Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3520822..3522533 -
1622817260.9588552-UTR-P-fluviatile_contig8:3524741..35249761622817260.9588552-UTR-P-fluviatile_contig8:3524741..3524976Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3524742..3524976 -
1693571787.1685479-UTR-P-fluviatile_contig8:3524741..35249761693571787.1685479-UTR-P-fluviatile_contig8:3524741..3524976Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3524742..3524976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.9123003-CDS-P-fluviatile_contig8:3522533..35229161622817260.9123003-CDS-P-fluviatile_contig8:3522533..3522916Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3522534..3522916 -
1693571786.8191683-CDS-P-fluviatile_contig8:3522533..35229161693571786.8191683-CDS-P-fluviatile_contig8:3522533..3522916Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3522534..3522916 -
1622817260.9236805-CDS-P-fluviatile_contig8:3523522..35237361622817260.9236805-CDS-P-fluviatile_contig8:3523522..3523736Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3523523..3523736 -
1693571786.8286092-CDS-P-fluviatile_contig8:3523522..35237361693571786.8286092-CDS-P-fluviatile_contig8:3523522..3523736Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3523523..3523736 -
1622817260.9356117-CDS-P-fluviatile_contig8:3524189..35242401622817260.9356117-CDS-P-fluviatile_contig8:3524189..3524240Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3524190..3524240 -
1693571786.8384748-CDS-P-fluviatile_contig8:3524189..35242401693571786.8384748-CDS-P-fluviatile_contig8:3524189..3524240Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3524190..3524240 -
1622817260.9464686-CDS-P-fluviatile_contig8:3524648..35247411622817260.9464686-CDS-P-fluviatile_contig8:3524648..3524741Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3524649..3524741 -
1693571787.1519747-CDS-P-fluviatile_contig8:3524648..35247411693571787.1519747-CDS-P-fluviatile_contig8:3524648..3524741Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3524649..3524741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14648.1

>prot_P-fluviatile_contig8.14648.1 ID=prot_P-fluviatile_contig8.14648.1|Name=mRNA_P-fluviatile_contig8.14648.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=247bp
MTEASELKDELTVLGQHLQRFFVEDRRPWAEFFGHVEQPKWTQADVKKRV
SANFSFFTTNYLMICATCSAFYILRSPGLLLTLLASLCMFLYVFMSRRKT
LVVLDVTLGMREKTIAAAVGSLLLLSLTGYIFTLLFSGIVGFTVCLLHAT
FRPPVARAVRRGGSGGGAPELHGGDGDLEGGGGGNVGRGRPGPVNANMRL
RTRPVPGGGGAMGGMSTTPPRGGGLGAGFEAPSMMDPAASTHSHAT*
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mRNA from alignment at P-fluviatile_contig8:3520822..3524976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14648.1 ID=mRNA_P-fluviatile_contig8.14648.1|Name=mRNA_P-fluviatile_contig8.14648.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4155bp|location=Sequence derived from alignment at P-fluviatile_contig8:3520822..3524976- (Porterinema fluviatile SAG_2381)
TGCAAGACGAGACCCGGGGAGCGTGGCGTGCGTGCGTGTGCGTGTGCCAT
AACAAAGCCTGACTAGTGTGGTGGCTGGGAAGAGCAACCACTGGATCGGA
AGAACAGCAGAGAAGGAGGGGAGGCGCTATCAAAGAACATCTGCAGGCCT
GTTCCTCCGCTCCGCAGCCAGACTTTTGTGCACAGCCTTCTGAGTGTCGG
CCAATTCTGCGGTATCAGGGTGGCGTCCAACTCTGATGACGGAAGCATCC
GAGCTGAAGGATGAACTCACCGTGCTTGGCCAGCACTTGCAAAGATTCTT
CGTCGAAGATCGTCGACCATGGGCAGAGGTGGGGAGAGCTAGACTTCGTG
AGTGCGAAATCCCAGTGAAGGAAAATGATGAAAATATATTGGCTGCTCGC
GTACGAGGTCGGCAAGCGGGAGGGGAATGAAGGGGGGTGGGACAGAAGCG
GGAATAAGTGCATTTCCCATGTTTCAAACCAACCCTTGGAGGGTCTCCCA
AATTTGTTCACATCGTGAATAAGCGCTGATTAATTATCGCCTTCGATTTT
ACTCATCTGCCATTCGACGTCGACGAATGTTGATCGCTTCTCTGCCCGCT
GCAGCTGTGCATACAGCGCACGCATCGGGAAATCTTAAAGTCTGTTGAGC
GTTGCTCCCTCTCTCGCTTGAAATCTCTCTCTCTCTTTCTCTTGCTCCAT
TAATCGACTGCGACACATGCGACTCGGGGCGAGCAGTTCTTCGGGCATGT
GGAGCAGCCGAAATGGACCCAGGCGGATGTTAAAAAGGTGAGCGAAACCT
CCCATCATAGTGATGGCAATCCACATGATGAGCGCCGGTGGGTAGTAGGG
TTGATTGATGTTCGCAAACGGGGCTCGGAGGCGTTGTTGAGTTTAGCATC
GAGAATGGTCGAAAAAATTAGCAAGACTTCCATTTATTTGACGATCAAGT
TGGAGAATGGTACGTGATATGCAGGGACCGTGTACACGAAAGGTTGCGCG
GCGTCCTGACACCATTTAGTTGGGGCTGTCAAGGGGCCGACAATTGTGAT
TTCGGATCATGTGTTCGCTACGCCACTGCCCTGTGCTGTTATTTGCTTGA
AGCTCTGGCCCTCTCTCCCTCTCTTTCTATTTTTGTCTGTTAATCTCTTC
CTAAACAATATGAGCCCTACGATGCCTGCCTACCGCGCGTACTCCCGTGA
TGTGCCCCCGCGTGCTTTGTTCGCTTCCCTCTGGCGGCAGAGAGTGAGCG
CCAACTTCTCCTTCTTCACGACCAACTACCTCATGATCTGCGCGACCTGC
TCGGCGTTTTACATCCTGCGATCACCGGGGCTGTTGCTGACCCTCCTGGC
GTCTCTGTGCATGTTCCTATACGTCTTCATGAGCCGTAGAAAGACGCTCG
TGGTTCTGGACGTGACCTTGGGCATGAGAGAAAAGACCATCGCGGCTGCT
GTAGGTGCGTGAACCCGCGCCCGCGCCCGCGCGCGATCGTGCCTCCCTCG
CCTTGCGCACGGGCGTCTTCGGCGCCGGGACCGGTGCAGCGCAAACCAAA
CAAATACATAAGCGATGCCCCGCTGGTGCTGATCGCAGAAGGCTTCGCCA
GCAGTATGCCGTGCCCTTGAAGGAGAAGTAATTACCATGCCCAGCAGAAA
GGAGGGTCGGCAGGTTGAAGACAAGGAGAACTACCGAACGGTGTAGCAAC
GTGTGCGTCTCACTCTATATGACCAGCTTTACCCCTGCGCCCGATGATAT
TTTTGCCGAGCCTTGTCGTTCAACGGCTGAACGGACGATCTGGTGCATGT
CGCGTCGGTAGCGATTGTACGCAACAGGAAATCTTGCAACGTCTCCTTTG
CCACCGGTTTGTTGCGATTGATGCCGTCGATGCTACGCTCTGCTATTCGA
CCGCGTTTTACCCTGGCTGACCTACGACCGCTGCCACTGCTTTCACTCGT
GCTGCAACCAGCACACGATAGTTTTACTTTCTTACGGGGTTCATCACGCT
CTCCGTCGCGCTCATTGCGTATCATGTACCGCATCCTGCCTGTGCGGATC
GACCAATCAGGTTCCCTGCTCCTCCTCTCGCTAACGGGCTACATCTTCAC
GCTGCTGTTCTCGGGCATCGTTGGCTTCACCGTGTGCCTGCTCCACGCGA
CCTTCCGTCCGCCGGTGGCGCGAGCCGTTCGCCGCGGCGGCAGCGGCGGT
GGGGCACCAGAGCTTCACGGGGGCGACGGCGACCTCGAGGGTGGGGGAGG
GGGAAACGTCGGGCGTGGTCGGCCCGGGCCGGTGAACGCGAATATGCGGC
TTAGGACGAGACCAGTACCGGGAGGCGGGGGGGCGATGGGCGGGATGTCT
ACGACCCCCCCCCGCGGCGGAGGCTTGGGGGCAGGGTTCGAGGCCCCGTC
GATGATGGACCCAGCGGCGAGCACGCACTCGCACGCCACCTGACCCGGGG
TTTCGAGACAGCAGTCGGCGGTGTCCTAAGGCGGCCGTGGTGGAACAAGC
TCGAAGTGCGCGGCGACGACAAGGGATGAGGAGCAGAACAGGGAAGCAGA
GGAGCCGCAGCGACAGGCCAAGATAAAGGCAGCCGAGTTTCCGCTACAAT
CGAGGTGGCAGATTTTGCAACGATGGCACGTTCGAAAGTCGGCCAGGGGG
TAGAAGGAGGTCACGGGATGTTACAACGCTGCTGCGGGGAGTCGGTTCGA
TCGCTAAACGTCACTCTGTCATGAGGAAGGAGATCGAATGCGCCGCCCAC
CTGAAAAAGGGAGATGGACTTACATCGGTTGCGAGTAGGGAGCAGCCTTG
TGCGTGCGTGCATTGTCCCCGGGCTGCGCGTTTCTACTCCGCACGTCTAG
TGCCCATAATGTGTGTACCTTCGTGAGACACCGTACTCTTACCAAGACAC
GTTCTGCAAGGGGTATCAGCCAAAGAGGACGGCGTTATTTTGTTGAGACG
TGGTACGGTTTGGAAGTAGTGGCACAGCCAACACGGCAGACGATCTCTTT
TCTGTGGTACTGACGTTTGGTCTTGAATGTTGTTTGATGGCTCAGCTCTC
TCAATTTTCGCTTTCGGTCGCCAGGCCTCCTGAAATGACTTGCTTGACAG
TGATTGCATTCCCAATCTTGCCTTGTGTCGCAGCAACAACTCTGTCGCAC
CTAAAATTCTGCTAGGGCAAACAATGGTTTTTCCTTCGTGGAGGAGTCGG
CGCTTGCAGTTTTAACGAGTCGTTGAATTTGAGTCACAACGACGATAGAC
GGTACAAGTAAGGCTGTCGATACGTTGCACTTCGGAGGAGGGCGCCTTCG
AAATTGCACTTTTGCTCCAGCCGTCTCCGATTATGGACGGGTTTTCAACC
TCTGTTCTCTGCATCGCTAAAGGCGTTGGATGCTGGCCACGCCGTTGCAC
ATACGCCCCAAGATATACATATCAACATTTGTTTGATCCGATCGCGCCGT
AACTTCTGCTTGACCGTTGACTTGTAACAATACAGATACGTTGACATGGA
TGGGGAAATTTTCTTTGGTTTCACGCGGCCGGGTGCGTTGAACTTCGCGG
TGAGAGTCAGGAAAGACGAATTGTCTGTCGGAGGCGCAATTTTGGACGTA
TGACAGCAGCGATATTAGACGCTGCAGCTTCAGCTGAATGTACTTCATGA
TTTTTGACGTTGCAGACGCCGTGTTGCGTGTGAAGGTGCGAACTTCGGGT
GGGTGTGCCTGATTTTGTTTCTGTCCGTTTCACGTGCCGCTCTAGCTGCC
GAGACTGCTTAGTGGTGTCATGGAAGAATTCACTTCTGTGAAACGACGGG
ATAATCCTCGACAGACATTGGGGAAGACCGATCGTTTTTTCAAGGTGGCT
CCCACATCACGCGTTGACTTGTGCGTGCACACGTGGGAGGTCAAAACATG
ATGGTTTACGAGTGCATTATTCCGTTTTGCATTTTTTCGCGCAGTGCGCA
CGCCGATTTTGCACACTGAGGCAAATGTACGGCGTGGTGCAGCACATCTT
CAGCCGAACCAGGACCACAAAGGTTGTGGCAGTCAGAACACGTCGGTCTC
CCGTGATCACGTGCCGAAAATGAAAGAACGGGCCATCAAAAGGGACAAAA
CCCACAATAGTAGCTGCATGAGTGTAGCGTCGCAAAGCTAGGAAAAGTGG
GGCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3520822..3524976-

>mRNA_P-fluviatile_contig8.14648.1 ID=mRNA_P-fluviatile_contig8.14648.1|Name=mRNA_P-fluviatile_contig8.14648.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1482bp|location=Sequence derived from alignment at P-fluviatile_contig8:3520822..3524976- (Porterinema fluviatile SAG_2381)
ATGACGGAAGCATCCGAGCTGAAGGATGAACTCACCGTGCTTGGCCAGCA
CTTGCAAAGATTCTTCGTCGAAGATCGTCGACCATGGGCAGAGATGACGG
AAGCATCCGAGCTGAAGGATGAACTCACCGTGCTTGGCCAGCACTTGCAA
AGATTCTTCGTCGAAGATCGTCGACCATGGGCAGAGTTCTTCGGGCATGT
GGAGCAGCCGAAATGGACCCAGGCGGATGTTAAAAAGTTCTTCGGGCATG
TGGAGCAGCCGAAATGGACCCAGGCGGATGTTAAAAAGAGAGTGAGCGCC
AACTTCTCCTTCTTCACGACCAACTACCTCATGATCTGCGCGACCTGCTC
GGCGTTTTACATCCTGCGATCACCGGGGCTGTTGCTGACCCTCCTGGCGT
CTCTGTGCATGTTCCTATACGTCTTCATGAGCCGTAGAAAGACGCTCGTG
GTTCTGGACGTGACCTTGGGCATGAGAGAAAAGACCATCGCGGCTGCTGT
AGAGAGTGAGCGCCAACTTCTCCTTCTTCACGACCAACTACCTCATGATC
TGCGCGACCTGCTCGGCGTTTTACATCCTGCGATCACCGGGGCTGTTGCT
GACCCTCCTGGCGTCTCTGTGCATGTTCCTATACGTCTTCATGAGCCGTA
GAAAGACGCTCGTGGTTCTGGACGTGACCTTGGGCATGAGAGAAAAGACC
ATCGCGGCTGCTGTAGGTTCCCTGCTCCTCCTCTCGCTAACGGGCTACAT
CTTCACGCTGCTGTTCTCGGGCATCGTTGGCTTCACCGTGTGCCTGCTCC
ACGCGACCTTCCGTCCGCCGGTGGCGCGAGCCGTTCGCCGCGGCGGCAGC
GGCGGTGGGGCACCAGAGCTTCACGGGGGCGACGGCGACCTCGAGGGTGG
GGGAGGGGGAAACGTCGGGCGTGGTCGGCCCGGGCCGGTGAACGCGAATA
TGCGGCTTAGGACGAGACCAGTACCGGGAGGCGGGGGGGCGATGGGCGGG
ATGTCTACGACCCCCCCCCGCGGCGGAGGCTTGGGGGCAGGGTTCGAGGC
CCCGTCGATGATGGACCCAGCGGCGAGCACGCACTCGCACGCCACCTGAG
TTCCCTGCTCCTCCTCTCGCTAACGGGCTACATCTTCACGCTGCTGTTCT
CGGGCATCGTTGGCTTCACCGTGTGCCTGCTCCACGCGACCTTCCGTCCG
CCGGTGGCGCGAGCCGTTCGCCGCGGCGGCAGCGGCGGTGGGGCACCAGA
GCTTCACGGGGGCGACGGCGACCTCGAGGGTGGGGGAGGGGGAAACGTCG
GGCGTGGTCGGCCCGGGCCGGTGAACGCGAATATGCGGCTTAGGACGAGA
CCAGTACCGGGAGGCGGGGGGGCGATGGGCGGGATGTCTACGACCCCCCC
CCGCGGCGGAGGCTTGGGGGCAGGGTTCGAGGCCCCGTCGATGATGGACC
CAGCGGCGAGCACGCACTCGCACGCCACCTGA
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