mRNA_P-fluviatile_contig8.14587.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14587.1
Unique NamemRNA_P-fluviatile_contig8.14587.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14587.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.250e-68
Identity = 135/207 (65.22%), Postives = 156/207 (75.36%), Query Frame = 1 
Query:    1 MALPPRSLEPSKAQPRHYKIEGSDQQE---PLELFAVGSQEPLVYVDLGDVFINDKAVLREVEVLSRRSYTLRVSVAWEQADVGSALVVASMEFQLENANLLALREASLGSSXXXXXXXXXXXXXPSFNELLNHACTVSDYLLPPGRRQPLVLVFCPCLQGPAEADTSFLRSFLRLAGVIKFSARRATAAELKAEGLPLEGQAAEER 612
            MALPPR  EPS+ + +H      D+Q+   PL++F VGS+EPL YVD+GDVFINDKAVLREVEVLSRRSYTL+VS+AWEQA   +A V+AS+EFQLENANLLALREA+L S+             P FNELLNHACTV DYLL PGRRQPLVLVF PCLQ PAEA  +F+R    L GV++FSARRATAAEL+AEG P E   AE R
Sbjct:    1 MALPPRPPEPSRVRRQHLDFRDGDEQDEPGPLDVFTVGSEEPLAYVDMGDVFINDKAVLREVEVLSRRSYTLKVSMAWEQAATTTASVLASLEFQLENANLLALREAALDSTSAP----------PYFNELLNHACTVGDYLLRPGRRQPLVLVFFPCLQDPAEAAMNFMR----LHGVVRFSARRATAAELEAEGFPPEFPVAEGR 193
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BLAST of mRNA_P-fluviatile_contig8.14587.1 vs. uniprot
Match: A0A6H5L1W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W0_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.840e-38
Identity = 92/150 (61.33%), Postives = 106/150 (70.67%), Query Frame = 1 
Query:  190 RRSYTLRVSVAWEQADVGSALVVASMEFQLENANLLALREASLGSSXXXXXXXXXXXXXPSFNELLNHACTVSDYLLPPGRRQPLVLVFCPCLQGPAEADTSFLRSFLRLAGVIKFSARRATAAELKAEGLPLEGQAAEERGIEDAAAHA 639
            RRSYTL+VS+ WEQA   +A V+AS+EFQLENANLLA+REA+L S+             P FNELLNHACTV D+LL P RRQPLVLVF PCLQ PAEA  +F+R    L GVI+FSARRATAAEL+AE  P E   AE +   DA A A
Sbjct:    2 RRSYTLKVSMGWEQAATTTASVLASLEFQLENANLLAMREAALDSTSAP----------PYFNELLNHACTVGDFLLRPERRQPLVLVFFPCLQDPAEAAMNFMR----LHGVIRFSARRATAAELEAERFPPEFPVAEGK---DAGADA 134
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BLAST of mRNA_P-fluviatile_contig8.14587.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-10
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 1 
Query:  127 VDLGDVFINDKAVLREVEVLSRRSYTLRVSVAWEQADVGSALVVASMEFQLENANLLALREA--SLGSSXXXXXXXXXXXXXPS------------FNELLNHACTVSDYLLPPGRRQPLVLVFCP 462
            +DLGDV+++DKAVLR++ +++  S+ + + + W+  +  +A   A++ FQLEN NL AL E+  S  S              PS            FNEL NH CTV   ++P     PLV+VF P
Sbjct: 1589 IDLGDVYLSDKAVLRQIGLVNSTSHDMTMRLTWQPEEPAAA--AAAVHFQLENQNLQALAESEESGSSEHWGAAPTAPLPANPSPNXXAGPNFNLTFNELFNHVCTVDACVVPARSTLPLVVVFVP 1712
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHH6_ECTSI1.250e-6865.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1W0_9PHAE1.840e-3861.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YT04_9STRA1.020e-1035.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2917344..2921328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue7.9e-63
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size775
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14587.1prot_P-fluviatile_contig8.14587.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2917344..2921328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817253.0067518-CDS-P-fluviatile_contig8:2917343..29174351622817253.0067518-CDS-P-fluviatile_contig8:2917343..2917435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2917344..2917435 +
1693571732.2698994-CDS-P-fluviatile_contig8:2917343..29174351693571732.2698994-CDS-P-fluviatile_contig8:2917343..2917435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2917344..2917435 +
1622817253.0171785-CDS-P-fluviatile_contig8:2919126..29191931622817253.0171785-CDS-P-fluviatile_contig8:2919126..2919193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2919127..2919193 +
1693571732.282165-CDS-P-fluviatile_contig8:2919126..29191931693571732.282165-CDS-P-fluviatile_contig8:2919126..2919193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2919127..2919193 +
1622817253.0351658-CDS-P-fluviatile_contig8:2919505..29196221622817253.0351658-CDS-P-fluviatile_contig8:2919505..2919622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2919506..2919622 +
1693571732.2909322-CDS-P-fluviatile_contig8:2919505..29196221693571732.2909322-CDS-P-fluviatile_contig8:2919505..2919622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2919506..2919622 +
1622817253.0459864-CDS-P-fluviatile_contig8:2920205..29204001622817253.0459864-CDS-P-fluviatile_contig8:2920205..2920400Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2920206..2920400 +
1693571732.2996597-CDS-P-fluviatile_contig8:2920205..29204001693571732.2996597-CDS-P-fluviatile_contig8:2920205..2920400Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2920206..2920400 +
1622817253.0578732-CDS-P-fluviatile_contig8:2920664..29208621622817253.0578732-CDS-P-fluviatile_contig8:2920664..2920862Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2920665..2920862 +
1693571732.3091679-CDS-P-fluviatile_contig8:2920664..29208621693571732.3091679-CDS-P-fluviatile_contig8:2920664..2920862Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2920665..2920862 +
1622817253.069556-CDS-P-fluviatile_contig8:2921223..29213281622817253.069556-CDS-P-fluviatile_contig8:2921223..2921328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2921224..2921328 +
1693571732.3193042-CDS-P-fluviatile_contig8:2921223..29213281693571732.3193042-CDS-P-fluviatile_contig8:2921223..2921328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2921224..2921328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14587.1

>prot_P-fluviatile_contig8.14587.1 ID=prot_P-fluviatile_contig8.14587.1|Name=mRNA_P-fluviatile_contig8.14587.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=258bp
MALPPRSLEPSKAQPRHYKIEGSDQQEPLELFAVGSQEPLVYVDLGDVFI
NDKAVLREVEVLSRRSYTLRVSVAWEQADVGSALVVASMEFQLENANLLA
LREASLGSSSSPVAAAAAAAAPPSFNELLNHACTVSDYLLPPGRRQPLVL
VFCPCLQGPAEADTSFLRSFLRLAGVIKFSARRATAAELKAEGLPLEGQA
AEERGIEDAAAHAAAASEVAALTGGSHHTSQERGAPGRRRSDGSNKDGGR
EDPPEKTW
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mRNA from alignment at P-fluviatile_contig8:2917344..2921328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14587.1 ID=mRNA_P-fluviatile_contig8.14587.1|Name=mRNA_P-fluviatile_contig8.14587.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3985bp|location=Sequence derived from alignment at P-fluviatile_contig8:2917344..2921328+ (Porterinema fluviatile SAG_2381)
ATGGCTCTGCCCCCTCGCTCTCTGGAGCCCAGCAAGGCTCAGCCTCGGCA
CTACAAAATCGAGGGCAGTGACCAGCAAGAACCTCTCGAGTTGTGAGTCA
CGAGTAGTCCCAGTGTGTGACCGCGGACGGAGAAGCGAGCCGGAAAAACA
GTGGTCGATCGTATGCAACATGTAGTGGTGGTGTGCCATACAACTTTCAA
ACTGGCATGTGTGACTGCCTCTCTCCGAAATGAATTACATTTATCTTTTT
TCACTCACGGCTACACCATATGCAATTAAAGAAATGGCTGTCGATCTCCG
GCTGCCCCTCCGACCTGTCAAGCCTGCTGCAGTGTACAATAGATAGGTCT
GTGGCAACAACGGGTGGGCAAGGTCGAGAGAAAGGCCTATCCGATAGAGT
CAGCTAAGTAAGGAAATTGCTGTTTTTGTCAGGAGCGGGTGGCTTGTATA
TTCGCCCGTGGGTTTTTCACCGCCGTTCTGCTGTGTACACCTTTGTCAAT
CGAGATAAATCGAGTAAGTGGTCCAAGCTTTGACTCGATTCAAGCTTCGA
CGAACTGCAACATACTTGAAAAAATCTCATTGGAGAGTAGATTTTATAAT
AGGCTGCGTGAAATGCCTGGAAGGCAGTAGGCACCGGGTGAGCGCAGGCA
CGGGATACAGGAGAGAGGAACGACCGGTCGCCTGTCAACCTTTGATAAAA
AATCGCACGGAATTTCCTTTCGAGAGATGGCGTGTTGACAAGCAGGGCAA
TGCCTTCCCTCCCCACACACCGATTTCAGCAACCTTGTCGAATACACAGG
AGTGCGGTATCGCGAATTGAGAGGAGTGTGAAAGATTTGTAGCTACACTT
CCGCCTAAGTAGTACTTGATGGCAGGAGCTTTTCGAATCTTTGAGAGAAT
CATTTGCTGCACGGTAGCTGATTAGCTGTTGGTAGCTGCAGTGGTCAAGG
TTTTGGCCCAGAAAGCTTGCGGGGTACACTCGCGCAGTTAATGCCAATGT
GCATGGGATTCAACCCGTTTTGGACTTTCACAACAACAAAATTACGGGTA
TTAGGAGTTGGGGGGGGCTCAAAAGTGCCAGATGAAAAGTGCCGCTGCCC
GTTTGCCGGTCAAACATCTAAGAACTAGCTTCCGCGCCAGTACTTAAACC
CTTAACCCCGTTCTGAATGGTGCCGGAGGCCGGTACAGTGCCGGTCATAT
CTCTGGGCACATGCCGGCACTACTATTCAGGGGCCCCCACCGCTGTATTT
CGTTTCCCCGCCGAACGACAGCAACACAAGATAGATTTTCAGGGAACATG
ATCCTCACTGCACTGTGGGGAGTACCCATACCCACTTCGGAGGCGGCAGA
CAGGAGAAAGAGCCACAAACAGCGGCACATATGTGCCTGCGCACATGTCC
GTTGCGCGGGGCGGTATCGCGGAGGGACCGCAGCCGCGGTCCAAAATTCC
ACGATCTGGATCCGAAATCCAAAAACAAGCCTGTCCTTTGGTTGGACCGT
TGCTTCGGACCTGCGATTTGGAGAGAAAGATGTATAGGTCCTTCACGGCG
AGCGTAGCACCGACCAACTCGTTTCGGGTGGGAACAGACCGCGGATACTC
TTTGAACTGCACTTGTATCCTTCCAAGAATCCTCCGCCCGAGCAACATTA
CACCTGAGTCGTAGCACGCATACGTACCAGCACTTCCGTCGCTCTGATTG
ATGTAATTTCGTGATACACGGACACTTTTACGCCCTCCGACTCTCGCCCC
GTGCCCGCATCGGATTTGATTTTGCCGGTCAAGATTTGCGGTCGGGTCGC
AAGAGCCGCTCGTTTACGTCGATCTGGGCGATGTATTCATCAACGACAAG
GTCCGTCGCCTTCTCCGCATTCGCGGGGGGATCCAGCGCTGAGATTTGAC
TGAAAGGGGGGGGAGGACAGGCGTCATGAAGGATGGGGGGGAAGAGGGCC
GGGGAGGGGTCTGCCGGGATCCGGGCAGAGGTGGGGATTCTCGTCCGGGA
TGACGTCCCACTAGTATACGATGAAAACGTTTTGGGAGTTGAAGAATGTT
TCGCTAGGATTATTGTCCTGCATTCCCTTGGACAACGTTGCTACGATACA
CCTGACTACCTTCATCCTTCTTGACTGTGCCACCGCCGCCGCCGCCGTGG
CCGCGACGATAGGCTGTATTGCGGGAGGTGGAGGTGCTGAGCAGGCGGAG
CTACACGCTGAGGGTTTCCGTGGCTTGGGAACAGGCGGACGTCGGGTCGG
CACTCGTGGTGGCGTCCATGGAATTCCAGGTGTGTGTGAAAATTTGGTCG
ACAACAAGGGTATATTGAAAGGTGGCTTGAGTTCCTGTCGGTTCATCCCG
CGCTGTGGTTCCCGCGAGTCCCAACTTTCACGTGGCACCAATTCGTGCAT
GATCTTAATCAGTCAACTCAGCGCCGGGGTGGCTCTCGAAGAGGTGTGCG
AAAAATTGCGCCCAAATGCGAGGAGGTTCCTCCTATCAGAGTGTGAGGAT
GCTCTCTCCGCCCCGAAAGGACAAGCGCCGTCAATAATCGATTATCTGCT
GCCCATGCAACAGCGCGCGCGCGGCCCTCCGTCCATCCCCCGCCATGACA
TCTTGTTGTGTAGATCTCCAGAGCAAAGTCGCACCCCGGCCCCGCCCTCG
CCCCCATCCTGAGCTGTAACCCTGACTTGCCCGCCTGCCTGTCCGCCCCG
TCTCCCCCGCCCTCTTCTCTGACAAACACCCCCAAACACTGCGCAACTCC
TTCACTTGCCTCCGTGTCTTGTGCGCGGGGCCGTTGGGTGGGTGGCACTT
TCTTGTTCCTTGTTCGGAATCGGCGTGTCGAACGAAACCGTCTTCCGGTG
ACGCGATGACAGCTGGAGAACGCCAACCTCCTGGCGTTGCGGGAAGCTTC
GCTCGGGTCGTCGTCGTCGCCGGTGGCGGCGGCGGCGGCGGCGGCGGCAC
CACCGTCCTTCAACGAGCTCCTCAACCACGCGTGCACGGTTAGCGACTAC
CTCCTACCCCCGGGGAGACGGCAGCCCCTGGTCTTGGTGTTTTGCCCCTG
TCTGCAGGTGAAGGCCACTTTTTTGTCTTCATTTGCTCTCCAGGGTTCTA
GTCGTCGCCCCGCTCTCGGGTGGGCGTTTGAGAAGTTCTGTGCTTCGCTT
GTTTGTTCGTGTTGCCCCTCCGGGGGTATTGTTTGACGGGATCGCGGTGT
ACAGTGTCTCGGTCTCAAGGTCTGAGACAGCACCAATTATGGGTATGAAA
GTTCTGGGGAAATTGGTCGCCGAATATGACCGCCGCCGCCGCCGCCGCTG
CTGCTTACACGTGGTCTGAAGGGCCCGGCTGAAGCCGATACTAGCTTCTT
GAGAAGCTTTTTGAGACTTGCCGGGGTGATTAAATTCTCGGCGCGAAGGG
CGACGGCGGCAGAACTCAAGGCGGAAGGTCTTCCTCTCGAGGGCCAGGCT
GCTGAGGAAAGGGGTATCGAAGATGCGGCCGCGCACGCCGCCGCTGCTTC
CGAGGTCGCGGCCTTGACGGTAAGTTCTGCAGGTATCGAAAAAGAAACAA
CATTGACGGTGAATCCTGCTCAATTCCGAAAACGGAACAAGTTGACATGT
CATCCTGCTGTTCGAGCAATCCGGTGTCCGTCGTTCGTGGTGTGGGCGTA
AAATGTACTGAGCTTGATCGTGTTTGTTGCGCTTGTCTCATGCCGTGTGT
GCCGTCAAATGGCACACAGCCGTTCATTTTGTCATCTCCGCACTTGTCGA
AATTTGATTTCAACGAGACCGCTTGATTGTTTGTTTCGTGGGCACATGTT
CTCTGTCTGCCTCCGCCTTGATATTCCTTGTTATTTGCAACGTTCGCTGT
GTCGTCTCGGGACCGCGGGCGGGAGCGCAGGGAGGCAGCCATCACACGTC
ACAGGAGCGAGGAGCTCCAGGGCGGCGAAGGAGCGACGGCAGCAACAAGG
ACGGGGGGAGAGAAGATCCTCCAGAGAAGACGTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2917344..2921328+

>mRNA_P-fluviatile_contig8.14587.1 ID=mRNA_P-fluviatile_contig8.14587.1|Name=mRNA_P-fluviatile_contig8.14587.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1548bp|location=Sequence derived from alignment at P-fluviatile_contig8:2917344..2921328+ (Porterinema fluviatile SAG_2381)
ATGGCTCTGCCCCCTCGCTCTCTGGAGCCCAGCAAGGCTCAGCCTCGGCA
CTACAAAATCGAGGGCAGTGACCAGCAAGAACCTCTCGAGTTATGGCTCT
GCCCCCTCGCTCTCTGGAGCCCAGCAAGGCTCAGCCTCGGCACTACAAAA
TCGAGGGCAGTGACCAGCAAGAACCTCTCGAGTTATTTGCGGTCGGGTCG
CAAGAGCCGCTCGTTTACGTCGATCTGGGCGATGTATTCATCAACGACAA
GATTTGCGGTCGGGTCGCAAGAGCCGCTCGTTTACGTCGATCTGGGCGAT
GTATTCATCAACGACAAGGCTGTATTGCGGGAGGTGGAGGTGCTGAGCAG
GCGGAGCTACACGCTGAGGGTTTCCGTGGCTTGGGAACAGGCGGACGTCG
GGTCGGCACTCGTGGTGGCGTCCATGGAATTCCAGGCTGTATTGCGGGAG
GTGGAGGTGCTGAGCAGGCGGAGCTACACGCTGAGGGTTTCCGTGGCTTG
GGAACAGGCGGACGTCGGGTCGGCACTCGTGGTGGCGTCCATGGAATTCC
AGCTGGAGAACGCCAACCTCCTGGCGTTGCGGGAAGCTTCGCTCGGGTCG
TCGTCGTCGCCGGTGGCGGCGGCGGCGGCGGCGGCGGCACCACCGTCCTT
CAACGAGCTCCTCAACCACGCGTGCACGGTTAGCGACTACCTCCTACCCC
CGGGGAGACGGCAGCCCCTGGTCTTGGTGTTTTGCCCCTGTCTGCAGCTG
GAGAACGCCAACCTCCTGGCGTTGCGGGAAGCTTCGCTCGGGTCGTCGTC
GTCGCCGGTGGCGGCGGCGGCGGCGGCGGCGGCACCACCGTCCTTCAACG
AGCTCCTCAACCACGCGTGCACGGTTAGCGACTACCTCCTACCCCCGGGG
AGACGGCAGCCCCTGGTCTTGGTGTTTTGCCCCTGTCTGCAGGGCCCGGC
TGAAGCCGATACTAGCTTCTTGAGAAGCTTTTTGAGACTTGCCGGGGTGA
TTAAATTCTCGGCGCGAAGGGCGACGGCGGCAGAACTCAAGGCGGAAGGT
CTTCCTCTCGAGGGCCAGGCTGCTGAGGAAAGGGGTATCGAAGATGCGGC
CGCGCACGCCGCCGCTGCTTCCGAGGTCGCGGCCTTGACGGGCCCGGCTG
AAGCCGATACTAGCTTCTTGAGAAGCTTTTTGAGACTTGCCGGGGTGATT
AAATTCTCGGCGCGAAGGGCGACGGCGGCAGAACTCAAGGCGGAAGGTCT
TCCTCTCGAGGGCCAGGCTGCTGAGGAAAGGGGTATCGAAGATGCGGCCG
CGCACGCCGCCGCTGCTTCCGAGGTCGCGGCCTTGACGGGAGGCAGCCAT
CACACGTCACAGGAGCGAGGAGCTCCAGGGCGGCGAAGGAGCGACGGCAG
CAACAAGGACGGGGGGAGAGAAGATCCTCCAGAGAAGACGTGGGGAGGCA
GCCATCACACGTCACAGGAGCGAGGAGCTCCAGGGCGGCGAAGGAGCGAC
GGCAGCAACAAGGACGGGGGGAGAGAAGATCCTCCAGAGAAGACGTGG
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