mRNA_P-fluviatile_contig8.14414.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14414.1
Unique NamemRNA_P-fluviatile_contig8.14414.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14414.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.010e-46
Identity = 81/113 (71.68%), Postives = 92/113 (81.42%), Query Frame = 3 
Query:    6 YDPEAMTLLTPELRKTCVALWVEGDGNCFWRSCARVLWGTDLYWRQLKLVVLAWSSVNVGVLVGEGGLLF-RNGL-HYDDDVHCRHVYRGPDGKRDDDRDNYASMLQEQVAKF 338
            YDP+A  +LTPELRKT VALWVEGDGNCFWRS A+ LWGTD YWRQLKL VLAWS+VNV  LVGEGG LF R G+ HYDD++H +H+YRGPDGK D   D+ ASML E +AKF
Sbjct:   86 YDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIYRGPDGKVDHRLDDDASMLLESIAKF 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE1.010e-4671.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1206045..1206391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size347
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817230.655393-UTR-P-fluviatile_contig8:1206044..12060641622817230.655393-UTR-P-fluviatile_contig8:1206044..1206064Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1206045..1206064 +
1693571584.5349607-UTR-P-fluviatile_contig8:1206044..12060641693571584.5349607-UTR-P-fluviatile_contig8:1206044..1206064Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1206045..1206064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817230.6673124-CDS-P-fluviatile_contig8:1206064..12063911622817230.6673124-CDS-P-fluviatile_contig8:1206064..1206391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1206065..1206391 +
1693571584.545516-CDS-P-fluviatile_contig8:1206064..12063911693571584.545516-CDS-P-fluviatile_contig8:1206064..1206391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1206065..1206391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14414.1prot_P-fluviatile_contig8.14414.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1206065..1206391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14414.1

>prot_P-fluviatile_contig8.14414.1 ID=prot_P-fluviatile_contig8.14414.1|Name=mRNA_P-fluviatile_contig8.14414.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
MTLLTPELRKTCVALWVEGDGNCFWRSCARVLWGTDLYWRQLKLVVLAWS
SVNVGVLVGEGGLLFRNGLHYDDDVHCRHVYRGPDGKRDDDRDNYASMLQ
EQVAKFCQD
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mRNA from alignment at P-fluviatile_contig8:1206045..1206391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14414.1 ID=mRNA_P-fluviatile_contig8.14414.1|Name=mRNA_P-fluviatile_contig8.14414.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=347bp|location=Sequence derived from alignment at P-fluviatile_contig8:1206045..1206391+ (Porterinema fluviatile SAG_2381)
AGAAGTATGACCCGGAGGCGATGACGCTCCTCACCCCGGAATTGCGGAAA
ACGTGTGTGGCGTTGTGGGTCGAGGGCGACGGCAATTGCTTTTGGCGTTC
TTGCGCACGGGTGCTGTGGGGTACAGATCTATACTGGCGCCAGCTGAAGC
TCGTAGTACTTGCGTGGAGTTCAGTTAACGTGGGGGTCCTGGTAGGGGAG
GGTGGGCTCCTTTTTCGAAACGGCCTGCATTACGACGACGATGTTCACTG
CCGCCACGTGTACAGGGGCCCCGATGGCAAACGTGACGACGATCGTGATA
ACTACGCGTCGATGCTCCAGGAGCAAGTCGCGAAGTTTTGCCAAGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1206045..1206391+

>mRNA_P-fluviatile_contig8.14414.1 ID=mRNA_P-fluviatile_contig8.14414.1|Name=mRNA_P-fluviatile_contig8.14414.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig8:1206045..1206391+ (Porterinema fluviatile SAG_2381)
ATGACGCTCCTCACCCCGGAATTGCGGAAAACGTGTGTGGCGTTGTGGGT
CGAGGGCGACGGCAATTGCTTTTGGCGTTCTTGCGCACGGGTGCTGTGGG
GTACAGATCTATACTGGCGCCAGCTGAAGCTCGTAGTACTTGCGTGGAGT
TCAGTTAACGTGGGGGTCCTGGTAGGGGAGGGTGGGCTCCTTTTTCGAAA
CGGCCTGCATTACGACGACGATGTTCACTGCCGCCACGTGTACAGGGGCC
CCGATGGCAAACGTGACGACGATCGTGATAACTACGCGTCGATGCTCCAG
GAGCAAGTCGCGAAGTTTTGCCAAGACATGACGCTCCTCACCCCGGAATT
GCGGAAAACGTGTGTGGCGTTGTGGGTCGAGGGCGACGGCAATTGCTTTT
GGCGTTCTTGCGCACGGGTGCTGTGGGGTACAGATCTATACTGGCGCCAG
CTGAAGCTCGTAGTACTTGCGTGGAGTTCAGTTAACGTGGGGGTCCTGGT
AGGGGAGGGTGGGCTCCTTTTTCGAAACGGCCTGCATTACGACGACGATG
TTCACTGCCGCCACGTGTACAGGGGCCCCGATGGCAAACGTGACGACGAT
CGTGATAACTACGCGTCGATGCTCCAGGAGCAAGTCGCGAAGTTTTGCCA
AGAC
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