mRNA_P-fluviatile_contig8.14684.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14684.1
Unique NamemRNA_P-fluviatile_contig8.14684.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Match: A0A6H5KCY9_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.460e-19
Identity = 70/187 (37.43%), Postives = 98/187 (52.41%), Query Frame = 2 
Query:  182 KELAAKLGKAATKAQEQEKEIKALKQQLAAATAAAPARQLSSQSTTPPGRGTPAHRNPAMRPSASSREAEGAEQKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQESDDEYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGEQFSNLLATHWKDKSEPPDWLVSLFRP-APASTVAPASAAVVNQ 739
            KE AA + K       QE+E++ L+++LA           S  ++TPPGRGTP+ R     PS   R  +    ++                             G E  +E ++ VM +LL+GFRSQ VS +DR +LM +AG QF+++L+ HW +KS PP+WLVSLFRP AP +T  PASA  V Q
Sbjct:   17 KEAAALVAKKDAALANQERELEELRRKLAGTVPP------SLSTSTPPGRGTPSERVSEQGPSRGDRPQQEPIPEEAAPANGEEKGATPEGTENGSDEDDNDGDEG-EWGNESERHVMYELLDGFRSQNVSADDRHALMTSAGGQFADMLSRHWTEKSTPPEWLVSLFRPTAPPTTTTPASAEEVAQ 196
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BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Match: A0A6H5KY51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY51_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.910e-18
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 2 
Query:  500 QESDDEYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGEQFSNLLATHWKDKSEPPDWLVSLFRP-APASTVAPASAAVVNQ 739
            Q+  DE ++ VM QLL+GFRSQ VS +DR +LM +AG QF+ +LA HWK+KS+PP+WLVSLFRP A  S   P SAA V Q
Sbjct:   92 QDWGDENERHVMYQLLKGFRSQNVSADDRRALMTSAGGQFAEMLAQHWKEKSDPPEWLVSLFRPTATPSPTPPVSAAEVAQ 172
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BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Match: A0A6H5KB61_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB61_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.570e-17
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  515 EYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGEQFSNLLATHWKDKSEPPDWLVSLFRP-APASTVAPASAAVVNQ 739
            E ++ VM +LL+GFRSQ VS +DR +LM +AG QF+++L+ HW +KS PP+WLVSLFRP AP +T  PASA  V Q
Sbjct:   73 ESERHVMYELLDGFRSQNVSADDRHALMTSAGGQFADMLSRHWTEKSTPPEWLVSLFRPTAPPTTTTPASAEEVAQ 148
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BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Match: A0A6H5L042_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L042_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 7.880e-17
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  515 EYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGEQFSNLLATHWKDKSEPPDWLVSLFRP-APASTVAPASAAVVNQ 739
            E ++ VM +LL+GFRSQ VS +DR +LM +AG QF+++L+ HW +KS PP+WLVSLFRP AP +T  PASA  V Q
Sbjct:   73 ESERHVMYELLDGFRSQNVSADDRHALMTSAGGQFADMLSRHWTEKSTPPEWLVSLFRPTAPPTTTTPASAEEVAQ 148
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BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Match: A0A6H5KHE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.350e-17
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:  515 EYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGEQFSNLLATHWKDKSEPPDWLVSLFRP-APASTVAPASAAVVNQ 739
            E ++ VM +LL+GFRSQ VS +DR +LM +AG QF+++L+ HW +KS PP+WLVSLFRP AP +T  PASA  V Q
Sbjct:  148 ESERHVMYELLDGFRSQNVSADDRHALMTSAGGQFADMLSRHWTEKSTPPEWLVSLFRPTAPPTTTTPASAEEVAQ 223
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BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Match: A0A6H5KMI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.700e-16
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 2 
Query:  515 EYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGEQFSNLLATHWKDKSEPPDWLVSLFRP-APASTVAPASAAVVNQ 739
            E ++ VM +LL+GFRSQ VS +DR + M +AG QF+++L+ HW +KS PP+WLVSLFRP AP +T  PASA  V Q
Sbjct:   98 ESERHVMYELLDGFRSQNVSADDRHARMTSAGGQFADMLSRHWTEKSTPPEWLVSLFRPTAPPTTTTPASAEEVAQ 173
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BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Match: A0A6H5KTG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.800e-14
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:  512 DEYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGEQFSNLLATHWKDKSEPPDWLVSLFRPAPASTVAPASAAVVNQ 739
            DE D  +MRQLLE FR QR+SP+DR+++M AAG QF+ L+  H  +KS PP WLVSLFRP    T++ ASA  V Q
Sbjct:  133 DERDMHIMRQLLEDFREQRLSPQDRKAMMEAAGGQFTELMLQHHTEKSNPPGWLVSLFRP----TLSAASAEQVTQ 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KCY9_9PHAE1.460e-1937.43Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KY51_9PHAE1.910e-1859.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB61_9PHAE1.570e-1757.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L042_9PHAE7.880e-1757.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE2_9PHAE8.350e-1757.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMI1_9PHAE3.700e-1656.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG6_9PHAE1.800e-1456.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3799791..3800529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size739
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.195452-UTR-P-fluviatile_contig8:3799790..37999531622817219.195452-UTR-P-fluviatile_contig8:3799790..3799953Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3799791..3799953 +
1693571544.3229043-UTR-P-fluviatile_contig8:3799790..37999531693571544.3229043-UTR-P-fluviatile_contig8:3799790..3799953Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3799791..3799953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.2056224-CDS-P-fluviatile_contig8:3799953..38005291622817219.2056224-CDS-P-fluviatile_contig8:3799953..3800529Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3799954..3800529 +
1693571544.3325615-CDS-P-fluviatile_contig8:3799953..38005291693571544.3325615-CDS-P-fluviatile_contig8:3799953..3800529Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3799954..3800529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14684.1prot_P-fluviatile_contig8.14684.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3799954..3800529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14684.1

>prot_P-fluviatile_contig8.14684.1 ID=prot_P-fluviatile_contig8.14684.1|Name=mRNA_P-fluviatile_contig8.14684.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=192bp
MSPPTRKELAAKLGKAATKAQEQEKEIKALKQQLAAATAAAPARQLSSQS
TTPPGRGTPAHRNPAMRPSASSREAEGAEQKDEEAEGDDEEEEDSDDEGG
ANGDDGAGDGDGQESDDEYDKDVMRQLLEGFRSQRVSPEDRESLMHAAGE
QFSNLLATHWKDKSEPPDWLVSLFRPAPASTVAPASAAVVNQ
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mRNA from alignment at P-fluviatile_contig8:3799791..3800529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14684.1 ID=mRNA_P-fluviatile_contig8.14684.1|Name=mRNA_P-fluviatile_contig8.14684.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=739bp|location=Sequence derived from alignment at P-fluviatile_contig8:3799791..3800529+ (Porterinema fluviatile SAG_2381)
TTCCTCAACCCTAGCAGCCCTTGGCAGTGGGTCAATACTGCCTCGGCACC
GGCCTCTGTCCCTGACAGTAGCCAGTGTCCTCATTGGCGTCACGAATAGA
GCACGGCTCCCGCCGTGAGTGATAGGAAGTGCGAGCACGTGAGACAAGAG
AAAAAATCAGAGGATGTCCCCACCAACCCGCAAAGAGCTCGCCGCCAAAT
TGGGGAAGGCAGCGACGAAGGCGCAGGAGCAGGAAAAGGAGATCAAGGCG
CTGAAGCAGCAACTTGCCGCTGCCACGGCCGCCGCACCCGCCCGCCAGTT
GTCGTCGCAGTCCACCACTCCACCTGGTCGTGGCACTCCGGCCCACCGGA
ATCCTGCTATGCGACCCTCTGCCTCTTCTCGAGAAGCAGAGGGCGCCGAG
CAGAAGGACGAGGAAGCCGAGGGCGACGATGAGGAAGAAGAGGACAGCGA
CGACGAAGGCGGCGCGAATGGTGACGACGGCGCCGGCGATGGCGATGGCC
AGGAGTCTGATGACGAGTATGACAAGGATGTCATGCGTCAACTGCTTGAA
GGCTTTCGGTCACAGCGCGTTTCTCCGGAGGATCGGGAGTCGCTCATGCA
CGCTGCTGGCGAGCAGTTCTCGAATCTACTGGCCACACACTGGAAGGACA
AGTCCGAGCCACCCGACTGGCTTGTGTCCCTCTTCCGGCCGGCCCCCGCA
TCCACGGTTGCTCCAGCCTCTGCCGCGGTGGTAAACCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3799791..3800529+

>mRNA_P-fluviatile_contig8.14684.1 ID=mRNA_P-fluviatile_contig8.14684.1|Name=mRNA_P-fluviatile_contig8.14684.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1152bp|location=Sequence derived from alignment at P-fluviatile_contig8:3799791..3800529+ (Porterinema fluviatile SAG_2381)
ATGTCCCCACCAACCCGCAAAGAGCTCGCCGCCAAATTGGGGAAGGCAGC
GACGAAGGCGCAGGAGCAGGAAAAGGAGATCAAGGCGCTGAAGCAGCAAC
TTGCCGCTGCCACGGCCGCCGCACCCGCCCGCCAGTTGTCGTCGCAGTCC
ACCACTCCACCTGGTCGTGGCACTCCGGCCCACCGGAATCCTGCTATGCG
ACCCTCTGCCTCTTCTCGAGAAGCAGAGGGCGCCGAGCAGAAGGACGAGG
AAGCCGAGGGCGACGATGAGGAAGAAGAGGACAGCGACGACGAAGGCGGC
GCGAATGGTGACGACGGCGCCGGCGATGGCGATGGCCAGGAGTCTGATGA
CGAGTATGACAAGGATGTCATGCGTCAACTGCTTGAAGGCTTTCGGTCAC
AGCGCGTTTCTCCGGAGGATCGGGAGTCGCTCATGCACGCTGCTGGCGAG
CAGTTCTCGAATCTACTGGCCACACACTGGAAGGACAAGTCCGAGCCACC
CGACTGGCTTGTGTCCCTCTTCCGGCCGGCCCCCGCATCCACGGTTGCTC
CAGCCTCTGCCGCGGTGGTAAACCAGATGTCCCCACCAACCCGCAAAGAG
CTCGCCGCCAAATTGGGGAAGGCAGCGACGAAGGCGCAGGAGCAGGAAAA
GGAGATCAAGGCGCTGAAGCAGCAACTTGCCGCTGCCACGGCCGCCGCAC
CCGCCCGCCAGTTGTCGTCGCAGTCCACCACTCCACCTGGTCGTGGCACT
CCGGCCCACCGGAATCCTGCTATGCGACCCTCTGCCTCTTCTCGAGAAGC
AGAGGGCGCCGAGCAGAAGGACGAGGAAGCCGAGGGCGACGATGAGGAAG
AAGAGGACAGCGACGACGAAGGCGGCGCGAATGGTGACGACGGCGCCGGC
GATGGCGATGGCCAGGAGTCTGATGACGAGTATGACAAGGATGTCATGCG
TCAACTGCTTGAAGGCTTTCGGTCACAGCGCGTTTCTCCGGAGGATCGGG
AGTCGCTCATGCACGCTGCTGGCGAGCAGTTCTCGAATCTACTGGCCACA
CACTGGAAGGACAAGTCCGAGCCACCCGACTGGCTTGTGTCCCTCTTCCG
GCCGGCCCCCGCATCCACGGTTGCTCCAGCCTCTGCCGCGGTGGTAAACC
AG
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