mRNA_P-fluviatile_contig8.14677.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14677.1
Unique NamemRNA_P-fluviatile_contig8.14677.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3745132..3745782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size651
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14677.1prot_P-fluviatile_contig8.14677.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3745287..3745697 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.14281-UTR-P-fluviatile_contig8:3745131..37452861622817219.14281-UTR-P-fluviatile_contig8:3745131..3745286Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3745132..3745286 +
1693571544.2873669-UTR-P-fluviatile_contig8:3745131..37452861693571544.2873669-UTR-P-fluviatile_contig8:3745131..3745286Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3745132..3745286 +
1622817219.1675858-UTR-P-fluviatile_contig8:3745697..37457821622817219.1675858-UTR-P-fluviatile_contig8:3745697..3745782Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3745698..3745782 +
1693571544.3117545-UTR-P-fluviatile_contig8:3745697..37457821693571544.3117545-UTR-P-fluviatile_contig8:3745697..3745782Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3745698..3745782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.1529799-CDS-P-fluviatile_contig8:3745286..37456971622817219.1529799-CDS-P-fluviatile_contig8:3745286..3745697Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3745287..3745697 +
1693571544.298048-CDS-P-fluviatile_contig8:3745286..37456971693571544.298048-CDS-P-fluviatile_contig8:3745286..3745697Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3745287..3745697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14677.1

>prot_P-fluviatile_contig8.14677.1 ID=prot_P-fluviatile_contig8.14677.1|Name=mRNA_P-fluviatile_contig8.14677.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=137bp
MQAVRGRLGMKLVGFEEGRDGRLEEGRDGEGKSGRGGGECGHTTLTHSVV
IWIHPSVNETRNRQQNPCHARTIPFGNEHAFASTLYKTGRHEGREGGTVL
RTMDGGVFRSGTRLGIKRGLPESHQTGSVNEPGAPH*
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mRNA from alignment at P-fluviatile_contig8:3745132..3745782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14677.1 ID=mRNA_P-fluviatile_contig8.14677.1|Name=mRNA_P-fluviatile_contig8.14677.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=651bp|location=Sequence derived from alignment at P-fluviatile_contig8:3745132..3745782+ (Porterinema fluviatile SAG_2381)
GCCTGTCCTCGTCACATCACATCAAAGCCGGAAAGAAAAATCGAAAGTCG
CACGGTGAACATCGAAATCCGCATGGATAGCACCGATCGTCGCGTGCGTT
AATCGTAGGTCGTCGCATGGACAACGTCGATCGTCGCTCCGTTTCGGCTT
GACGAATGCAGGCAGTGCGTGGGAGATTGGGAATGAAGCTGGTGGGATTT
GAAGAAGGGAGGGACGGAAGACTGGAGGAAGGAAGAGACGGGGAAGGGAA
GAGCGGAAGGGGAGGAGGGGAGTGCGGGCATACTACTTTAACACACTCAG
TCGTGATTTGGATACACCCAAGTGTGAATGAAACCAGAAATCGACAACAG
AACCCTTGCCATGCTAGAACAATCCCATTTGGAAACGAGCACGCCTTTGC
CTCCACACTATACAAGACAGGCAGGCACGAAGGGAGGGAGGGAGGGACAG
TACTCCGCACTATGGATGGTGGCGTCTTTCGCTCAGGCACAAGGCTCGGA
ATAAAACGAGGGCTTCCTGAGTCGCATCAAACGGGTTCCGTCAATGAACC
AGGTGCGCCCCATTGACAAGATAGTGAAGGGGCGGACACGCGAACAGCAA
CACGGGACACCCGGACTTCATGAAACACACGCACGTTTTCGGGGCTTTGC
C
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3745132..3745782+

>mRNA_P-fluviatile_contig8.14677.1 ID=mRNA_P-fluviatile_contig8.14677.1|Name=mRNA_P-fluviatile_contig8.14677.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=822bp|location=Sequence derived from alignment at P-fluviatile_contig8:3745132..3745782+ (Porterinema fluviatile SAG_2381)
ATGCAGGCAGTGCGTGGGAGATTGGGAATGAAGCTGGTGGGATTTGAAGA
AGGGAGGGACGGAAGACTGGAGGAAGGAAGAGACGGGGAAGGGAAGAGCG
GAAGGGGAGGAGGGGAGTGCGGGCATACTACTTTAACACACTCAGTCGTG
ATTTGGATACACCCAAGTGTGAATGAAACCAGAAATCGACAACAGAACCC
TTGCCATGCTAGAACAATCCCATTTGGAAACGAGCACGCCTTTGCCTCCA
CACTATACAAGACAGGCAGGCACGAAGGGAGGGAGGGAGGGACAGTACTC
CGCACTATGGATGGTGGCGTCTTTCGCTCAGGCACAAGGCTCGGAATAAA
ACGAGGGCTTCCTGAGTCGCATCAAACGGGTTCCGTCAATGAACCAGGTG
CGCCCCATTGAATGCAGGCAGTGCGTGGGAGATTGGGAATGAAGCTGGTG
GGATTTGAAGAAGGGAGGGACGGAAGACTGGAGGAAGGAAGAGACGGGGA
AGGGAAGAGCGGAAGGGGAGGAGGGGAGTGCGGGCATACTACTTTAACAC
ACTCAGTCGTGATTTGGATACACCCAAGTGTGAATGAAACCAGAAATCGA
CAACAGAACCCTTGCCATGCTAGAACAATCCCATTTGGAAACGAGCACGC
CTTTGCCTCCACACTATACAAGACAGGCAGGCACGAAGGGAGGGAGGGAG
GGACAGTACTCCGCACTATGGATGGTGGCGTCTTTCGCTCAGGCACAAGG
CTCGGAATAAAACGAGGGCTTCCTGAGTCGCATCAAACGGGTTCCGTCAA
TGAACCAGGTGCGCCCCATTGA
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