mRNA_P-fluviatile_contig8.14410.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14410.1
Unique NamemRNA_P-fluviatile_contig8.14410.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1170150..1170606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size457
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14410.1prot_P-fluviatile_contig8.14410.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1170264..1170572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.035879-UTR-P-fluviatile_contig8:1170149..11702631622817218.035879-UTR-P-fluviatile_contig8:1170149..1170263Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1170150..1170263 +
1693571543.3915188-UTR-P-fluviatile_contig8:1170149..11702631693571543.3915188-UTR-P-fluviatile_contig8:1170149..1170263Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1170150..1170263 +
1622817218.0606427-UTR-P-fluviatile_contig8:1170572..11706061622817218.0606427-UTR-P-fluviatile_contig8:1170572..1170606Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1170573..1170606 +
1693571543.606104-UTR-P-fluviatile_contig8:1170572..11706061693571543.606104-UTR-P-fluviatile_contig8:1170572..1170606Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1170573..1170606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.0483234-CDS-P-fluviatile_contig8:1170263..11705721622817218.0483234-CDS-P-fluviatile_contig8:1170263..1170572Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1170264..1170572 +
1693571543.403655-CDS-P-fluviatile_contig8:1170263..11705721693571543.403655-CDS-P-fluviatile_contig8:1170263..1170572Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1170264..1170572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14410.1

>prot_P-fluviatile_contig8.14410.1 ID=prot_P-fluviatile_contig8.14410.1|Name=mRNA_P-fluviatile_contig8.14410.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
MSALEDTNLGRVVICQPGKLRFDAVTGRLFQRPQSWLSCRDLITGRLSSL
SRECGNSAYEISAAKTSPGGKYLLSKAFMLMCFASACVIAGIVWKQSICE
WS*
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mRNA from alignment at P-fluviatile_contig8:1170150..1170606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14410.1 ID=mRNA_P-fluviatile_contig8.14410.1|Name=mRNA_P-fluviatile_contig8.14410.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=457bp|location=Sequence derived from alignment at P-fluviatile_contig8:1170150..1170606+ (Porterinema fluviatile SAG_2381)
CACCTTATCTCAAGTCGGGCAAACAACCTTTTCACACGTTGTTTTACTAG
AAAGCTTGCGGGAAAAGGAAATGAAACCGGCCTTCTTGCCGCATGAGTGT
TGGCATGATACGCGATGTCTGCATTAGAGGATACCAACCTGGGACGGGTG
GTTATATGTCAGCCCGGCAAGTTGAGGTTTGATGCTGTTACTGGGAGGTT
ATTTCAGCGCCCGCAGTCTTGGCTGTCGTGCCGTGATCTTATCACGGGAC
GTCTTAGTTCGCTGTCGAGAGAGTGTGGAAACAGCGCGTACGAAATCAGT
GCAGCGAAGACTTCCCCTGGAGGCAAGTATCTACTTTCCAAAGCGTTCAT
GCTGATGTGCTTCGCCTCTGCTTGTGTGATTGCTGGTATTGTATGGAAAC
AGTCCATTTGTGAATGGTCTTAATGGTTTGTCAGTGGACGTACAATTACC
CCCCACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1170150..1170606+

>mRNA_P-fluviatile_contig8.14410.1 ID=mRNA_P-fluviatile_contig8.14410.1|Name=mRNA_P-fluviatile_contig8.14410.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig8:1170150..1170606+ (Porterinema fluviatile SAG_2381)
ATGTCTGCATTAGAGGATACCAACCTGGGACGGGTGGTTATATGTCAGCC
CGGCAAGTTGAGGTTTGATGCTGTTACTGGGAGGTTATTTCAGCGCCCGC
AGTCTTGGCTGTCGTGCCGTGATCTTATCACGGGACGTCTTAGTTCGCTG
TCGAGAGAGTGTGGAAACAGCGCGTACGAAATCAGTGCAGCGAAGACTTC
CCCTGGAGGCAAGTATCTACTTTCCAAAGCGTTCATGCTGATGTGCTTCG
CCTCTGCTTGTGTGATTGCTGGTATTGTATGGAAACAGTCCATTTGTGAA
TGGTCTTAAATGTCTGCATTAGAGGATACCAACCTGGGACGGGTGGTTAT
ATGTCAGCCCGGCAAGTTGAGGTTTGATGCTGTTACTGGGAGGTTATTTC
AGCGCCCGCAGTCTTGGCTGTCGTGCCGTGATCTTATCACGGGACGTCTT
AGTTCGCTGTCGAGAGAGTGTGGAAACAGCGCGTACGAAATCAGTGCAGC
GAAGACTTCCCCTGGAGGCAAGTATCTACTTTCCAAAGCGTTCATGCTGA
TGTGCTTCGCCTCTGCTTGTGTGATTGCTGGTATTGTATGGAAACAGTCC
ATTTGTGAATGGTCTTAA
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