mRNA_P-fluviatile_contig8.14381.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14381.1
Unique NamemRNA_P-fluviatile_contig8.14381.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:887856..888376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size516
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.995435-UTR-P-fluviatile_contig8:887855..8878601622817217.995435-UTR-P-fluviatile_contig8:887855..887860Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 887856..887860 +
1693571543.3674037-UTR-P-fluviatile_contig8:887855..8878601693571543.3674037-UTR-P-fluviatile_contig8:887855..887860Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 887856..887860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.0052009-CDS-P-fluviatile_contig8:887860..8883761622817218.0052009-CDS-P-fluviatile_contig8:887860..888376Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 887861..888376 +
1693571543.377117-CDS-P-fluviatile_contig8:887860..8883761693571543.377117-CDS-P-fluviatile_contig8:887860..888376Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 887861..888376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14381.1prot_P-fluviatile_contig8.14381.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 887861..888376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14381.1

>prot_P-fluviatile_contig8.14381.1 ID=prot_P-fluviatile_contig8.14381.1|Name=mRNA_P-fluviatile_contig8.14381.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=172bp
MSLGSPSFADGGGWGGRGGDRGHPGGRLDGGMEVGYGSNDIGVDDGIVHG
SGNEETEIKTREGLQGMRVLKMSLADSDDPGEGPDDRRRTAASATESAAV
AYLHQCGGDGGRSATNGDGNANDGGETNAPHLQHQNRGRSSEPGALGVLS
TSSAPSSELATEGAFLHRVNCA
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mRNA from alignment at P-fluviatile_contig8:887856..888376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14381.1 ID=mRNA_P-fluviatile_contig8.14381.1|Name=mRNA_P-fluviatile_contig8.14381.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=521bp|location=Sequence derived from alignment at P-fluviatile_contig8:887856..888376+ (Porterinema fluviatile SAG_2381)
CCCTGATGAGCCTTGGCTCTCCTTCGTTTGCTGACGGCGGAGGCTGGGGT
GGACGCGGTGGCGACCGCGGCCACCCGGGGGGGCGGTTGGACGGGGGAAT
GGAAGTTGGCTACGGAAGCAATGACATTGGCGTTGACGATGGAATTGTTC
ATGGGAGCGGCAACGAAGAAACGGAGATCAAGACTAGGGAAGGGCTCCAA
GGCATGCGAGTCCTGAAGATGAGCCTCGCGGATTCGGATGACCCCGGCGA
AGGGCCCGACGACCGTCGGCGCACAGCGGCGTCAGCGACCGAGTCTGCAG
CGGTCGCCTACCTCCACCAATGCGGCGGCGACGGCGGCAGAAGTGCCACC
AACGGCGACGGCAACGCCAATGACGGCGGCGAGACCAATGCCCCCCACCT
CCAGCACCAAAACCGGGGCCGCTCGTCGGAACCCGGCGCCCTAGGTGTTC
TGTCCACTTCCTCCGCCCCGTCGTCCGAGTTGGCGACGGAGGGTGCGTTT
CTTCACCGAGTGAACTGCGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:887856..888376+

>mRNA_P-fluviatile_contig8.14381.1 ID=mRNA_P-fluviatile_contig8.14381.1|Name=mRNA_P-fluviatile_contig8.14381.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1032bp|location=Sequence derived from alignment at P-fluviatile_contig8:887856..888376+ (Porterinema fluviatile SAG_2381)
ATGAGCCTTGGCTCTCCTTCGTTTGCTGACGGCGGAGGCTGGGGTGGACG
CGGTGGCGACCGCGGCCACCCGGGGGGGCGGTTGGACGGGGGAATGGAAG
TTGGCTACGGAAGCAATGACATTGGCGTTGACGATGGAATTGTTCATGGG
AGCGGCAACGAAGAAACGGAGATCAAGACTAGGGAAGGGCTCCAAGGCAT
GCGAGTCCTGAAGATGAGCCTCGCGGATTCGGATGACCCCGGCGAAGGGC
CCGACGACCGTCGGCGCACAGCGGCGTCAGCGACCGAGTCTGCAGCGGTC
GCCTACCTCCACCAATGCGGCGGCGACGGCGGCAGAAGTGCCACCAACGG
CGACGGCAACGCCAATGACGGCGGCGAGACCAATGCCCCCCACCTCCAGC
ACCAAAACCGGGGCCGCTCGTCGGAACCCGGCGCCCTAGGTGTTCTGTCC
ACTTCCTCCGCCCCGTCGTCCGAGTTGGCGACGGAGGGTGCGTTTCTTCA
CCGAGTGAACTGCGCCATGAGCCTTGGCTCTCCTTCGTTTGCTGACGGCG
GAGGCTGGGGTGGACGCGGTGGCGACCGCGGCCACCCGGGGGGGCGGTTG
GACGGGGGAATGGAAGTTGGCTACGGAAGCAATGACATTGGCGTTGACGA
TGGAATTGTTCATGGGAGCGGCAACGAAGAAACGGAGATCAAGACTAGGG
AAGGGCTCCAAGGCATGCGAGTCCTGAAGATGAGCCTCGCGGATTCGGAT
GACCCCGGCGAAGGGCCCGACGACCGTCGGCGCACAGCGGCGTCAGCGAC
CGAGTCTGCAGCGGTCGCCTACCTCCACCAATGCGGCGGCGACGGCGGCA
GAAGTGCCACCAACGGCGACGGCAACGCCAATGACGGCGGCGAGACCAAT
GCCCCCCACCTCCAGCACCAAAACCGGGGCCGCTCGTCGGAACCCGGCGC
CCTAGGTGTTCTGTCCACTTCCTCCGCCCCGTCGTCCGAGTTGGCGACGG
AGGGTGCGTTTCTTCACCGAGTGAACTGCGCC
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