mRNA_P-fluviatile_contig8.14352.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14352.1
Unique NamemRNA_P-fluviatile_contig8.14352.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14352.1 vs. uniprot
Match: A0A6H5KW40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW40_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.360e-23
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = -1 
Query:   13 EVRNIACNMDKRGKLDGREKTVSVIGDRCRPAEDKQGGDTISKEFLCRVWQMRQERPNVGGASTR-RNGAPSGKGWAVNGQMTKAS 267
            ++R   C+MDK GKLD  EKT++ IGDR    E  + GD + KEFLC +WQ R+E PNVGG S+R RNGAPS KG  VNGQMT AS
Sbjct:  108 DMRQRGCDMDKFGKLDNSEKTIAGIGDRWWAQEAVEDGDNMCKEFLCSLWQKREELPNVGGVSSRGRNGAPSRKGRVVNGQMTTAS 193
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BLAST of mRNA_P-fluviatile_contig8.14352.1 vs. uniprot
Match: A0A6H5L585_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L585_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.840e-18
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = -1 
Query:   28 EVRNIACNMDKRGKLDGREKTVSVIGDRCRPAEDKQGGDTISKEFLCRVWQMRQERPNVGGASTR-RNGAPSGKGWAVNGQ 267
            ++R   C+MDK GKLD  EKT++VI DR    E  + GD + K+FLC +WQ R+E PNVGG S+R RNGAPS KG  VNGQ
Sbjct:  237 DMRQRGCDMDKFGKLDDSEKTITVIEDRWWAQEAVEDGDKMCKKFLCSLWQKRKELPNVGGVSSRGRNGAPSRKGRVVNGQ 317
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BLAST of mRNA_P-fluviatile_contig8.14352.1 vs. uniprot
Match: A0A6H5JCP6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-15
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = -1 
Query:   13 EKTVSVIGDRCRPAEDKQGGDTISKEFLCRVWQMRQERPNVGGASTR-RNGAPSGKGWAVNGQMTKAS 213
            EKT++VIGDR    E  + GD + KEFLC +WQ R+E PNVGG S+R RNGAPS KG AVNGQMT AS
Sbjct:  650 EKTIAVIGDRWWAQEAVEDGDKMCKEFLCSLWQKRKELPNVGGVSSRGRNGAPSRKGRAVNGQMTIAS 717
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BLAST of mRNA_P-fluviatile_contig8.14352.1 vs. uniprot
Match: A0A6H5JRK8_9PHAE (Origin recognition complex subunit 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.400e-14
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = -1 
Query:   37 MDKRGKLDGREKTVSVIGDRCRPAEDKQGGDTISKEFLCRVWQMRQERPNVGGASTR-RNGAPSGKGWAV 243
            MDK GKLD REKT++VIGDR    E  + GD +  +FLC +WQ R++ PNVGG S+R RNGAPS KG  V
Sbjct:    1 MDKFGKLDNREKTIAVIGDRWWANEAVENGDKMCNKFLCSLWQKRKKLPNVGGVSSRGRNGAPSRKGRVV 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KW40_9PHAE6.360e-2359.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L585_9PHAE3.840e-1856.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCP6_9PHAE1.600e-1564.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JRK8_9PHAE4.400e-1458.57Origin recognition complex subunit 1 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:685843..686463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size623
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.756895-CDS-P-fluviatile_contig8:685842..6864631622817217.756895-CDS-P-fluviatile_contig8:685842..686463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 685843..686463 +
1693571543.1338747-CDS-P-fluviatile_contig8:685842..6864631693571543.1338747-CDS-P-fluviatile_contig8:685842..686463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 685843..686463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14352.1prot_P-fluviatile_contig8.14352.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 685843..686463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14352.1

>prot_P-fluviatile_contig8.14352.1 ID=prot_P-fluviatile_contig8.14352.1|Name=mRNA_P-fluviatile_contig8.14352.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=207bp
YSCSTCLSHLTIDRPSLPGRSTVPSSRGTPDIWALLSHLPYSTQELLANR
VPPLFVFGWPTSIPYDGDCLFSSIEFTTLVHVTCDVPHLSRSSRSSLCSS
HSAAMWALLSSGSSYGRACVSSSSSVVFPVYLYRLAGKCIIGLRIEVASS
AFSRFPSCLSKTFSSLYPSSVSRIIYLLPSPFSLSPSACLSPLSIMSHSG
GGRVRNR
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mRNA from alignment at P-fluviatile_contig8:685843..686463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14352.1 ID=mRNA_P-fluviatile_contig8.14352.1|Name=mRNA_P-fluviatile_contig8.14352.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=621bp|location=Sequence derived from alignment at P-fluviatile_contig8:685843..686463+ (Porterinema fluviatile SAG_2381)
TACTCGTGCTCTACTTGCCTTAGTCATTTGACCATTGACCGCCCATCCCT
TCCCGGACGGAGCACCGTTCCTTCTAGTAGAGGCACCCCCGACATTTGGG
CGCTCTTGTCGCATTTGCCATACTCTACACAGGAACTCCTTGCTAATCGT
GTCCCCCCCTTGTTTGTCTTCGGCTGGCCTACATCGATCCCCTATGACGG
AGACTGTCTTTTCTCTTCCATCGAGTTTACCACGCTTGTCCATGTTACAT
GCGATGTTCCTCACCTCTCCAGGTCCTCTCGTTCCTCTCTATGCAGCTCA
CATTCTGCAGCAATGTGGGCTCTACTTTCCTCGGGCTCGTCGTATGGGCG
TGCTTGCGTATCCTCCTCTTCTTCCGTTGTATTTCCGGTGTATCTTTATC
GCCTGGCTGGCAAGTGTATCATAGGTCTCCGAATCGAAGTCGCCAGTTCA
GCTTTTTCGCGTTTCCCCTCTTGCCTTTCAAAGACATTTTCATCCCTCTA
TCCTAGTTCAGTTTCCCGTATTATATATTTGTTGCCCTCACCATTCTCCT
TGTCTCCAAGCGCTTGTCTTTCACCCCTGTCTATCATGTCCCATTCGGGG
GGGGGGCGGGTGCGAAATCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:685843..686463+

>mRNA_P-fluviatile_contig8.14352.1 ID=mRNA_P-fluviatile_contig8.14352.1|Name=mRNA_P-fluviatile_contig8.14352.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1242bp|location=Sequence derived from alignment at P-fluviatile_contig8:685843..686463+ (Porterinema fluviatile SAG_2381)
TACTCGTGCTCTACTTGCCTTAGTCATTTGACCATTGACCGCCCATCCCT
TCCCGGACGGAGCACCGTTCCTTCTAGTAGAGGCACCCCCGACATTTGGG
CGCTCTTGTCGCATTTGCCATACTCTACACAGGAACTCCTTGCTAATCGT
GTCCCCCCCTTGTTTGTCTTCGGCTGGCCTACATCGATCCCCTATGACGG
AGACTGTCTTTTCTCTTCCATCGAGTTTACCACGCTTGTCCATGTTACAT
GCGATGTTCCTCACCTCTCCAGGTCCTCTCGTTCCTCTCTATGCAGCTCA
CATTCTGCAGCAATGTGGGCTCTACTTTCCTCGGGCTCGTCGTATGGGCG
TGCTTGCGTATCCTCCTCTTCTTCCGTTGTATTTCCGGTGTATCTTTATC
GCCTGGCTGGCAAGTGTATCATAGGTCTCCGAATCGAAGTCGCCAGTTCA
GCTTTTTCGCGTTTCCCCTCTTGCCTTTCAAAGACATTTTCATCCCTCTA
TCCTAGTTCAGTTTCCCGTATTATATATTTGTTGCCCTCACCATTCTCCT
TGTCTCCAAGCGCTTGTCTTTCACCCCTGTCTATCATGTCCCATTCGGGG
GGGGGGCGGGTGCGAAATCGGTACTCGTGCTCTACTTGCCTTAGTCATTT
GACCATTGACCGCCCATCCCTTCCCGGACGGAGCACCGTTCCTTCTAGTA
GAGGCACCCCCGACATTTGGGCGCTCTTGTCGCATTTGCCATACTCTACA
CAGGAACTCCTTGCTAATCGTGTCCCCCCCTTGTTTGTCTTCGGCTGGCC
TACATCGATCCCCTATGACGGAGACTGTCTTTTCTCTTCCATCGAGTTTA
CCACGCTTGTCCATGTTACATGCGATGTTCCTCACCTCTCCAGGTCCTCT
CGTTCCTCTCTATGCAGCTCACATTCTGCAGCAATGTGGGCTCTACTTTC
CTCGGGCTCGTCGTATGGGCGTGCTTGCGTATCCTCCTCTTCTTCCGTTG
TATTTCCGGTGTATCTTTATCGCCTGGCTGGCAAGTGTATCATAGGTCTC
CGAATCGAAGTCGCCAGTTCAGCTTTTTCGCGTTTCCCCTCTTGCCTTTC
AAAGACATTTTCATCCCTCTATCCTAGTTCAGTTTCCCGTATTATATATT
TGTTGCCCTCACCATTCTCCTTGTCTCCAAGCGCTTGTCTTTCACCCCTG
TCTATCATGTCCCATTCGGGGGGGGGGCGGGTGCGAAATCGG
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