mRNA_P-fluviatile_contig8.14580.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14580.1
Unique NamemRNA_P-fluviatile_contig8.14580.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14580.1 vs. uniprot
Match: A0A6H5KXI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI7_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 8.540e-29
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = -2 
Query:  130 TEWQDFALLPLNHSIMSTRLRHSMEMKGRSLARSRLAYAADAGMNEWETTCSNPSTKVTRFHC 318
            TEWQD ALLPLN+S+M TRLRHSMEMK RSLAR RLAYAADAGMNEWE TCSNPSTKVTR HC
Sbjct:    2 TEWQDCALLPLNYSMMLTRLRHSMEMKDRSLARFRLAYAADAGMNEWEATCSNPSTKVTRLHC 64
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BLAST of mRNA_P-fluviatile_contig8.14580.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.040e-25
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 3 
Query:   21 MDSSAT*EESDSGSSSSSVVEVVPTSRARGGGTQEVSSETSSPLSRGSSMLSPTRSSPRLQRRRGENAPENDPSSPSSGVDE 266
            MDSSAT EESDSGSSSS VV+VVPTSRARGGGTQEVS + SSPLSRGSSM   TRSSPRLQRRRGENAPENDPSSPSSG D+
Sbjct:    1 MDSSATGEESDSGSSSSMVVDVVPTSRARGGGTQEVSGDASSPLSRGSSMSPATRSSPRLQRRRGENAPENDPSSPSSGADD 82
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BLAST of mRNA_P-fluviatile_contig8.14580.1 vs. uniprot
Match: A0A6H5K689_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K689_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.530e-25
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = -2 
Query:  130 LPLNHSIMSTRLRHSMEMKGRSLARSRLAYAADAGMNEWETTCSNPSTKVTRFHC 294
            +PLNHS+MST LRHSMEMKGRSLARSRLAYAADAGMNEWE TCSNPSTKVTR HC
Sbjct:    3 VPLNHSMMSTGLRHSMEMKGRSLARSRLAYAADAGMNEWEATCSNPSTKVTRLHC 57
[Close]
BLAST of mRNA_P-fluviatile_contig8.14580.1 vs. uniprot
Match: A0A6H5KS51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS51_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.280e-6
Identity = 77/196 (39.29%), Postives = 98/196 (50.00%), Query Frame = 3 
Query:   21 MDSSA-T*EESDSGSSSS-SVVEVVPTSR----------------------------ARGG-GTQEVSSETSSPLSRGSSMLSPTRSSPRLQRRRGENAPENDPSSPSSGVDESTLSSGSKAGGRNLATPSPSRRTTRCSPKHHDDADGYGGIVQGRTVRSAGGPKGGGSG-SFTSPLNLVSSQESTPSQGGSAAG 512
            MDSS+ + EES+SGS+SS  VVEV   SR                            A GG  +++ +S+ SS LS    M   +R+SPR  RR  E+   +  SSP     ES  S+ S  G    ATPSP R   R SP+  +  DGY  ++ GR V+  G    GGSG SFTSPLNL SSQE    +GG+  G
Sbjct:    1 MDSSSGSGEESESGSNSSLEVVEVRSGSRSHPPSLSRHRLGDWQGDRDATSSLEGSEAAGGLSSEDSNSDESSGLSGVGKMGLGSRASPRSSRRPREDGGADGLSSP-----ESQSSASSSLG----ATPSPRRSNRRLSPRRRNTEDGYLDLIGGRAVQQGGKETKGGSGASFTSPLNLASSQE----EGGTGEG 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KXI7_9PHAE8.540e-2987.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRS9_9PHAE1.040e-2586.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K689_9PHAE1.530e-2590.91Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS51_9PHAE1.280e-639.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2856872..2859647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1165
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14580.1prot_P-fluviatile_contig8.14580.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2858139..2859480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.8234553-UTR-P-fluviatile_contig8:2856871..28570451622817216.8234553-UTR-P-fluviatile_contig8:2856871..2857045Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2856872..2857045 -
1693571542.0188913-UTR-P-fluviatile_contig8:2856871..28570451693571542.0188913-UTR-P-fluviatile_contig8:2856871..2857045Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2856872..2857045 -
1622817216.838649-UTR-P-fluviatile_contig8:2857603..28577471622817216.838649-UTR-P-fluviatile_contig8:2857603..2857747Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2857604..2857747 -
1693571542.0294416-UTR-P-fluviatile_contig8:2857603..28577471693571542.0294416-UTR-P-fluviatile_contig8:2857603..2857747Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2857604..2857747 -
1622817216.8494601-UTR-P-fluviatile_contig8:2858082..28581381622817216.8494601-UTR-P-fluviatile_contig8:2858082..2858138Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2858083..2858138 -
1693571542.1288056-UTR-P-fluviatile_contig8:2858082..28581381693571542.1288056-UTR-P-fluviatile_contig8:2858082..2858138Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2858083..2858138 -
1622817216.8809586-UTR-P-fluviatile_contig8:2859480..28596471622817216.8809586-UTR-P-fluviatile_contig8:2859480..2859647Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2859481..2859647 -
1693571542.159418-UTR-P-fluviatile_contig8:2859480..28596471693571542.159418-UTR-P-fluviatile_contig8:2859480..2859647Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2859481..2859647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.8598526-CDS-P-fluviatile_contig8:2858138..28582971622817216.8598526-CDS-P-fluviatile_contig8:2858138..2858297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2858139..2858297 -
1693571542.1393893-CDS-P-fluviatile_contig8:2858138..28582971693571542.1393893-CDS-P-fluviatile_contig8:2858138..2858297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2858139..2858297 -
1622817216.8699849-CDS-P-fluviatile_contig8:2859015..28594801622817216.8699849-CDS-P-fluviatile_contig8:2859015..2859480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2859016..2859480 -
1693571542.1493669-CDS-P-fluviatile_contig8:2859015..28594801693571542.1493669-CDS-P-fluviatile_contig8:2859015..2859480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2859016..2859480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14580.1

>prot_P-fluviatile_contig8.14580.1 ID=prot_P-fluviatile_contig8.14580.1|Name=mRNA_P-fluviatile_contig8.14580.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=208bp
MLSPTRSSPRLQRRRGENAPENDPSSPSSGVDESTLSSGSKAGGRNLATP
SPSRRTTRCSPKHHDDADGYGGIVQGRTVRSAGGPKGGGSGSFTSPLNLV
SSQESTPSQGGSAAGQKSSSRGLLRVAGPEDRRERARRARGRLELTPHLT
PHPPKEHVGCGKATARRQRSISSFRSCARYSTRARRTRLKRGARSTRGCG
TTTSFST*
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mRNA from alignment at P-fluviatile_contig8:2856872..2859647-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14580.1 ID=mRNA_P-fluviatile_contig8.14580.1|Name=mRNA_P-fluviatile_contig8.14580.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2776bp|location=Sequence derived from alignment at P-fluviatile_contig8:2856872..2859647- (Porterinema fluviatile SAG_2381)
GGGCGTCCCTGATTAGTCGCATGGACAGCAGTGCGACATGAGAAGAGAGC
GACTCCGGCAGCAGCTCCAGCTCGGTCGTAGAGGTGGTCCCTACCTCGCG
TGCACGTGGAGGAGGAACGCAGGAAGTCAGCAGTGAAACCTCGTCACCTT
TGTCGAGGGGTTCGAGCATGTTGTCTCCCACTCGTTCATCCCCGCGTCTG
CAGCGTAGGCGAGGCGAGAACGCGCCAGAGAACGACCCTTCATCTCCATC
GAGTGGCGTAGACGAGTCGACATTATCGAGTGGTTCAAAGGCAGGAGGGC
GAAATCTTGCCACTCCGTCTCCAAGCCGAAGGACTACGCGGTGCTCACCA
AAGCATCATGACGACGCCGACGGCTACGGGGGCATCGTACAAGGACGCAC
GGTACGGTCCGCAGGTGGGCCGAAGGGAGGAGGTAGTGGGTCGTTCACTT
CGCCCCTCAACCTTGTGTCGAGCCAGGAGAGCACTCCCAGTCAAGGAGGA
AGCGCAGCGGGGCAGAAATCGAGCAGTCGGGGTCTGCTTCGGGTGGCGGG
ACCCGAGGACAGAAGGGAAAGAGCAAGAAGGGCAAGGGGAAGGCTGGAGC
TGACCCCACATCTGACCCCACATCCACCCAAGGTGTGTTGCATGGTAACG
CCGACAGGGTACCTATTGTAGACATGTACAATTCAATCCGGTTTTCGCAG
CGAAGGTTGCTCACCCCCGCAATTGTTCGCAAGTGGCTGTACTATTAATA
GTGATGTCTCCCGAGTTTGATTTTGCAAGCACCGCTGTGTATGTTCCAGG
ATTGTTGAAAGGAACTCGTTGGTCACCCCAGTGTCAAGACAAACTCGAAC
GTAGACTCGACTGTTCCCTTGGGGACGCGTTCAGCACAAGGGCCATATGT
AATGGTTTCGGTGTCCGTCAGGCCTTTCAACACTACACTACTGCTGTCGT
GCCCCTCCATGGCCATATGCAAGGCGCGTGCGACCGCGGGGGTGATATTT
GTACGCTGGCTTGCGTAGTGGTAATGCTGCGTACTGCAATTTTCAACTCT
GTGGTTCAATGACCTTAACTTTTTAACCGCTGTGTGCATATCGGGAAGCA
GTAAATGGAAATCATACCACTCGGGTATATAGAAGGGGGTGACATCCTGA
TTTGTACGCGCTCCCCTCTGTGTCCATCGTCGCATCTTCATGTACCTACG
CTTATTGTCGGATACGAACCCCTGCATTGCTGGAAAACAGGTGTGTGTGT
GCGCAGAAGCCTGTAGCTTAGTCTCAATTAAAACCGGCAGTCATGTCTCC
GCGTCGGCCTCGTTTTGCTGTACATGCTTCAAACCTCATCGTCCGCGCAG
GAGCATGTAGGCTGTGGCAAGGCGACGGCGAGAAGACAGCGTTCCATCTC
CTCATTCAGGAGTTGTGCCCGATACAGCACGAGGGCAAGAAGGACAAGGC
TAAAGCGTGGCGCGAGATCTACAAGAGGCTGCGGGACGACCACATCGTTC
TCAACCTGACGGACAGGAAGGGACAGACGAGGGAGGTAGTGGTGGGCATG
GGCCCGAGCATGGAGGTGCGTTGCGGATGTATATGTTGTGATGCTCATGT
GTTGGGGTTGCGCCGCGTACCATCTAAGTTGGCTTAAAGAACGTGTTTCG
ATAGCTAACCAAACTCAGTACTTGATGTAGAGCCTAGCCCCTACCCCAGT
ACCGCGTCTTAAGTGCTCTCCGGTCGGACACCCTTTGCTACGCATGTCGG
GCGTGCTTTTGGTGCATGGTAGAAAGTAAATCAACGAGGTAAATACTCCC
AAGTGTACACCCCCCCCCCCATCCCCTCCAACACACGCACAAACACCTCT
ACACACCCCTCCCTTGTCGTGCACACGGGCGAACGTGCGGACATACCCAG
GGGCAGACGGAGGCCGAAGTGGTGAAGAAGCTGAAGGAGAGGTTCGATGT
GGACCGCCGGGCCTTCGCGCGGAAAGAGAGCAAGGAGGAGAAGAGCACCG
GAGAAGGGAGCATGGACGCGGATGAAGTGACCGAGTCGACGGAGGTGATG
ACTTTCTTGAACGAAATAACGGTATTGCAGTACCGACACAACTTTTTTGG
AGACTACGGACTGTGTCGTCCGTTTTGGGTACGCTTGCATTCATGTAGAG
AACAACTGGGTACTGCACGAAGCGTCGTTCATTCTTAGAACTCGGCCGTT
GTCGGCGAGGGGGCGTGTGTGTCCCGGCATGCGCAGCCATCGTACGTGGA
CGGGGTTATGTCATATGGCGCGTGCCACACGTGGTACTTTTCTCACACCA
TCATGCAACTCCCCTTCGAATTATTGGTGGTGTCCACACGGCCTGGTATT
TTGTCTGCAATGTATCTTTGCCTGTGACCGTTGCCCCTACTGTAGCCGAT
TTTATCGTGCCTGCTGTTTTTAGCTTTTGTTTCTGACGGCGCGAGGCCCC
GACATGTTGGACTATTGGGCTCGTTAGTGTGTACACTATTGTGTGAAGCG
ACATCCGTGCGCTAAACGGAAGAGTTGCAGCGCGATGAATGTATTTTTCA
TTGTGTGCTGTTTCCGCGACGGTCGTTGTGCGCTCTCGGGTCTGCATTTC
AGGGGGAGGAGCTGAGGAAGGCCGTCGAGGCTTGGACATCCGGCAAATCG
ATGAAGAAGGCCACCAAAGTCGAGCACCGGGAGATGGGGGAGGAGACCCG
CAACCAAGCACTACAGGCATTCAACTCTGGGCGGGAGGAGCGGGGGGGAA
CTCGCGGGAATCGCGTTTCTGGCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2856872..2859647-

>mRNA_P-fluviatile_contig8.14580.1 ID=mRNA_P-fluviatile_contig8.14580.1|Name=mRNA_P-fluviatile_contig8.14580.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1248bp|location=Sequence derived from alignment at P-fluviatile_contig8:2856872..2859647- (Porterinema fluviatile SAG_2381)
ATGTTGTCTCCCACTCGTTCATCCCCGCGTCTGCAGCGTAGGCGAGGCGA
GAACGCGCCAGAGAACGACCCTTCATCTCCATCGAGTGGCGTAGACGAGT
CGACATTATCGAGTGGTTCAAAGGCAGGAGGGCGAAATCTTGCCACTCCG
TCTCCAAGCCGAAGGACTACGCGGTGCTCACCAAAGCATCATGACGACGC
CGACGGCTACGGGGGCATCGTACAAGGACGCACGGTACGGTCCGCAGGTG
GGCCGAAGGGAGGAGGTAGTGGGTCGTTCACTTCGCCCCTCAACCTTGTG
TCGAGCCAGGAGAGCACTCCCAGTCAAGGAGGAAGCGCAGCGGGGCAGAA
ATCGAGCAGTCGGGGTCTGCTTCGGGTGGCGGGACCCGAGGACAGAAGGG
AAAGAGCAAGAAGGGCAAGGGGAAGGCTGGAGCTGACCCCACATCTGACC
CCACATCCACCCAAGATGTTGTCTCCCACTCGTTCATCCCCGCGTCTGCA
GCGTAGGCGAGGCGAGAACGCGCCAGAGAACGACCCTTCATCTCCATCGA
GTGGCGTAGACGAGTCGACATTATCGAGTGGTTCAAAGGCAGGAGGGCGA
AATCTTGCCACTCCGTCTCCAAGCCGAAGGACTACGCGGTGCTCACCAAA
GCATCATGACGACGCCGACGGCTACGGGGGCATCGTACAAGGACGCACGG
TACGGTCCGCAGGTGGGCCGAAGGGAGGAGGTAGTGGGTCGTTCACTTCG
CCCCTCAACCTTGTGTCGAGCCAGGAGAGCACTCCCAGTCAAGGAGGAAG
CGCAGCGGGGCAGAAATCGAGCAGTCGGGGTCTGCTTCGGGTGGCGGGAC
CCGAGGACAGAAGGGAAAGAGCAAGAAGGGCAAGGGGAAGGCTGGAGCTG
ACCCCACATCTGACCCCACATCCACCCAAGGAGCATGTAGGCTGTGGCAA
GGCGACGGCGAGAAGACAGCGTTCCATCTCCTCATTCAGGAGTTGTGCCC
GATACAGCACGAGGGCAAGAAGGACAAGGCTAAAGCGTGGCGCGAGATCT
ACAAGAGGCTGCGGGACGACCACATCGTTCTCAACCTGAGAGCATGTAGG
CTGTGGCAAGGCGACGGCGAGAAGACAGCGTTCCATCTCCTCATTCAGGA
GTTGTGCCCGATACAGCACGAGGGCAAGAAGGACAAGGCTAAAGCGTGGC
GCGAGATCTACAAGAGGCTGCGGGACGACCACATCGTTCTCAACCTGA
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