mRNA_P-fluviatile_contig8.14404.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14404.1
Unique NamemRNA_P-fluviatile_contig8.14404.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1143215..1144738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size486
Cds size255
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14404.1prot_P-fluviatile_contig8.14404.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1143446..1144738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.574062-UTR-P-fluviatile_contig8:1143214..11434451622817215.574062-UTR-P-fluviatile_contig8:1143214..1143445Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1143215..1143445 -
1693571533.703608-UTR-P-fluviatile_contig8:1143214..11434451693571533.703608-UTR-P-fluviatile_contig8:1143214..1143445Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1143215..1143445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.5841863-CDS-P-fluviatile_contig8:1143445..11436281622817215.5841863-CDS-P-fluviatile_contig8:1143445..1143628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1143446..1143628 -
1693571533.7229543-CDS-P-fluviatile_contig8:1143445..11436281693571533.7229543-CDS-P-fluviatile_contig8:1143445..1143628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1143446..1143628 -
1622817215.5942466-CDS-P-fluviatile_contig8:1144666..11447381622817215.5942466-CDS-P-fluviatile_contig8:1144666..1144738Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1144667..1144738 -
1693571534.07121-CDS-P-fluviatile_contig8:1144666..11447381693571534.07121-CDS-P-fluviatile_contig8:1144666..1144738Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1144667..1144738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14404.1

>prot_P-fluviatile_contig8.14404.1 ID=prot_P-fluviatile_contig8.14404.1|Name=mRNA_P-fluviatile_contig8.14404.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=85bp
VNVEGEGEQRRRGLGESQGDWNYIEILILRARVSLFSSESNPPAFHHGRE
IIFAKARPGGSGRVRRAAAAAGAAAAAGAMGGSR*
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mRNA from alignment at P-fluviatile_contig8:1143215..1144738-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14404.1 ID=mRNA_P-fluviatile_contig8.14404.1|Name=mRNA_P-fluviatile_contig8.14404.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1524bp|location=Sequence derived from alignment at P-fluviatile_contig8:1143215..1144738- (Porterinema fluviatile SAG_2381)
GTGAACGTTGAAGGAGAGGGCGAGCAGAGGAGACGGGGATTGGGCGAGTC
GCAGGGCGATTGGAATTATATTGTGAGTCATGATCCAGCGCTGAGGGAAC
AGCTCGTCGACGTTCAGTCGCACTTACACACCCACGCTCGGCTCTTACGT
GAAGTGTCGGCGCAAATTTCACACATCTTGAGCTTTTGACTCTCGACCGG
CGTATGCATCCGCATTCACGACGCGTGAATGGAGGGCCGCTGGGTAATGA
CGAGGAAGATATCGAGCGGCTGAAACGGCTGCGACCAAGGTCGAAAACGC
ACAACGCGGATTTGTCGCACACCCCGCAACTCCAGCGCAGCTGCGTAAGT
TGCTAACCTACATCACAACAGCAATCCTGTAGAACGACCGCCGTGGTTCT
TGAACACCAGATAAGTTTGCACACAGTGGTGGTGCTGGTGTTCTGCTGAT
CAATGGATTCACGCGGGATCTGTCAGTCGGTAGTATAGAACGGCATATTG
CGTTCATTTATGCCGACGAGGGGTTGATATCCAGGGGCAACGTGTTGTCT
CTCCGCACACAATCAGCAGCAGTGTTCCAAATCTAAAATGTAGCCCTATC
CGCACTGCTGTTATGTTGGCAAGAGCGACCAATTCGACAAGGCGGCCTTT
CGCGAGTGCGTTTTCAATTATTGGCGTTGTTTTTGCTCGGCAATCCTGTT
TGCACCGGTTGCAACAAATCCTTCTGCAGTTCGGGTGGCACAGCGCAGCT
GTCCCGGTTGCGTGCTACATCACAGCCGCTGCGTGTACCGTTTCCGATGG
GTAGAGACGAAGGAAGCACTCCCCATATGCTTTTTGTAGCTTTGTAACAT
TGCGACTTGGCAGGGTGTTGTCGCTGTCTGCTCAACCCGAGGGCGACAGA
AAACGGTCATTCGCCCCGTTTTGTTTTTTTTTCATTTTTCACGTTCCTTG
TCGTATCTCGTCGTACTTTGTGGAAGGCAGGCATGCGGCAGTGAGGATTC
CGCGAAGATCAGGGTGATCACGTTTCTTCGTCCGGCGCAGTAGCAGCTGA
TGCTCCCGTGCCTGCTCTTTCGTTGCGCGCCCCCCTCCAATCTTTGTTTG
GTGCGCACAGGAAATACTGATACTACGAGCGCGCGTTTCGTTGTTCTCCT
CCGAGAGCAACCCACCGGCATTTCACCACGGGCGGGAAATCATCTTCGCC
AAGGCCCGACCAGGAGGCAGTGGACGGGTACGTCGAGCGGCAGCAGCAGC
AGGCGCAGCAGCAGCAGCAGGAGCAATGGGTGGATCGCGATGAAGAAGGG
AGGGACGTCAGCACTAGTGACGAACGAGGAAGAGCGACGCGGGGCGAAAC
GATAGCGCTCACCCCTGACCCGGATCCTTCAGCATTGGCATTGGCTGCGG
CAGCAGCAGCAGAACGAGGACGAGGAGGAGTGGATGGTAGCGGTGGCGAC
GTCGGAGGCTCCGGGTTGGGTGGCAGCGGGGGGCGTGTCGCACACTTCAT
ACAGATTCCGTCCGCGGTCCAGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1143215..1144738-

>mRNA_P-fluviatile_contig8.14404.1 ID=mRNA_P-fluviatile_contig8.14404.1|Name=mRNA_P-fluviatile_contig8.14404.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=510bp|location=Sequence derived from alignment at P-fluviatile_contig8:1143215..1144738- (Porterinema fluviatile SAG_2381)
GTGAACGTTGAAGGAGAGGGCGAGCAGAGGAGACGGGGATTGGGCGAGTC
GCAGGGCGATTGGAATTATATTGTGAACGTTGAAGGAGAGGGCGAGCAGA
GGAGACGGGGATTGGGCGAGTCGCAGGGCGATTGGAATTATATTGAAATA
CTGATACTACGAGCGCGCGTTTCGTTGTTCTCCTCCGAGAGCAACCCACC
GGCATTTCACCACGGGCGGGAAATCATCTTCGCCAAGGCCCGACCAGGAG
GCAGTGGACGGGTACGTCGAGCGGCAGCAGCAGCAGGCGCAGCAGCAGCA
GCAGGAGCAATGGGTGGATCGCGATGAGAAATACTGATACTACGAGCGCG
CGTTTCGTTGTTCTCCTCCGAGAGCAACCCACCGGCATTTCACCACGGGC
GGGAAATCATCTTCGCCAAGGCCCGACCAGGAGGCAGTGGACGGGTACGT
CGAGCGGCAGCAGCAGCAGGCGCAGCAGCAGCAGCAGGAGCAATGGGTGG
ATCGCGATGA
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