mRNA_P-fluviatile_contig8.14379.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14379.1
Unique NamemRNA_P-fluviatile_contig8.14379.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:884398..886801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size307
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14379.1prot_P-fluviatile_contig8.14379.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 884398..886801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.4651136-CDS-P-fluviatile_contig8:884397..8844791622817215.4651136-CDS-P-fluviatile_contig8:884397..884479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 884398..884479 +
1693571533.427907-CDS-P-fluviatile_contig8:884397..8844791693571533.427907-CDS-P-fluviatile_contig8:884397..884479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 884398..884479 +
1622817215.4752643-CDS-P-fluviatile_contig8:885502..8856801622817215.4752643-CDS-P-fluviatile_contig8:885502..885680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 885503..885680 +
1693571533.4377618-CDS-P-fluviatile_contig8:885502..8856801693571533.4377618-CDS-P-fluviatile_contig8:885502..885680Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 885503..885680 +
1622817215.4863832-CDS-P-fluviatile_contig8:886755..8868011622817215.4863832-CDS-P-fluviatile_contig8:886755..886801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 886756..886801 +
1693571533.447641-CDS-P-fluviatile_contig8:886755..8868011693571533.447641-CDS-P-fluviatile_contig8:886755..886801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 886756..886801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14379.1

>prot_P-fluviatile_contig8.14379.1 ID=prot_P-fluviatile_contig8.14379.1|Name=mRNA_P-fluviatile_contig8.14379.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MLVTGGGDSLWNDQRIPFCITGRLSLPGLEVELEKQHLEGYHNRIAYFGR
VLPGGGGDKPDGCPGNDSPPPTRLVGVYEHGDFVLLRNPNADLDSSSRTL
GG
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mRNA from alignment at P-fluviatile_contig8:884398..886801+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14379.1 ID=mRNA_P-fluviatile_contig8.14379.1|Name=mRNA_P-fluviatile_contig8.14379.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2404bp|location=Sequence derived from alignment at P-fluviatile_contig8:884398..886801+ (Porterinema fluviatile SAG_2381)
ATGCTCGTGACGGGCGGCGGAGACTCTCTCTGGAACGACCAGCGCATCCC
TTTCTGCATCACGGGCCGCCTGTCACTCCCGGGTAAGCACAAGGACCCAC
TGCTGCTGCATCCAAGGTTCATGTCCCTGCCAGACCGCTCGTTGAGAACG
GCGTCTTGGCGAGGAGGCAGCGGGCGTCCTCCCGCGGTGCCGCTGCCCGT
CCCGACGGCTTGCCTGCCAAACAAGCAGTGGCGCGCTGGCTTGTGCTCAA
ACTCGATCGAAGAAGGCTAGCGACAAGAAACGAGCTACACGAGCTGGCGA
TGTTTGGGAAGCACTTCTCGAGAGGGAGGGACGGAGGGAGGAAATGTGCT
TAGACTCATGTTTGCCGTGTGACGGTCACAGGACCACCTCGCCCCGTATT
GAAACCCGAGGTGGAGCCGGTCTACCACTATTTTCCGAAAGGATTGGCCT
AACATTGCAGCAAGAATTACGCCAAGCTCCGTAGGGTGTTCGGAAAGTCG
CGCCGATGGCCGACCTGAAAACCCTTACGTGAGCCTTCGGCGTGTTGCCC
TCGTTTGTCTAGTGTGTGTGCAGAGTACGGCTTTGTGCCATCGTTTTTAC
CGTCATATTTTCCCGGCCTTGGCAAGCGTGGGCCATCGGTGTGCATTGCA
CGGAGTACAACTGCCTCGCGAGTGCGTGGCCTGACATTTGTAGCGCAACG
CAAGCTAGAATCTAACCCATACGTGCACAGCAATCGTGCGCGCATCGATC
CGCCAACCCAGCATTAACCCGCCACATCAAGGAGGGATCAGAATCCAGCG
CCCATGTTGTGTGCACTCGGCTCTCCTATAACGGACAAGAAACACTCTCG
CACGCGACGAGGGCTTTTTTCCTCAGTGACCCTAACGTATGCTGCCCCTC
GCCTGCTCTGCCTTCCAATCCCTTCACGCCCTATCTCGTGCCCGTGTTAA
TAACTTCAACACAACAAGCGACGCCGGGTCGACAAAAACAAACAAAAAAT
ACCGCTACCTTCGCCCCAACAACAACCACACATGGAATGTCAACGGAACC
GTCAACTTCTGGGCTGCCAACAACGACGCCGACGTCGACGGTACATAAAT
TTCAGGTCTAGAGGTGGAGTTGGAGAAGCAGCACCTGGAGGGCTACCACA
ACCGCATCGCATACTTCGGCCGGGTGCTGCCTGGCGGGGGCGGTGACAAG
CCCGATGGCTGTCCCGGGAACGACTCGCCGCCTCCTACACGTCTCGTCGG
TGTCTATGAGCACGGCGATTTCGTTCTGCTCAGGTACAGCGCGTGGGGAA
GGAAAGCGTGGCTTGTGGGGGTGGGCAAGACGGGAGTGCTGTTGGCGTTG
ACCGAAAGACCCGCCTCTCGCGCGTCGCCAACAACGACTGGTCAGTGCAC
GTGAGAACGGAGACGGGGGCTGCGGTGGGGGGTGTACTCATAGTCGTGCA
TGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGG
AGCACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAG
CGCCGTGAGGTATTCGGCGAGTCGCATGAAGGGTTGCATCCTGCTAAGGG
TGTTCGGCATCTTGTGCTTACTTCCTTGCATACGGATGACAGCTGCGTAT
GGCTTAATTTATTTTCTGGTTCTTTCACTTCCAGAGACAGTTGTAAGCAC
TGTGTAACTGCCTCGAGGGTGCTTGACCATTTTAACACAACGTGGTGCGA
TCATCCCCCTTGCGCGGAATGAGGGTTCTCCACTCCGCACAACATGATCT
TCTCGACCACCATTATGGTTACCGCCAAAAAAACCAGGGGTAGAAAAAAA
GACTGTAACCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTGTTTTACAA
CGTCGTTGCCAAGCGACGAACATCCAATCCCGATGGCAAACACCGAGGTG
AGAGCCAGCGGGGGGGCAGCTGCGGTGGGAGGGAGGAAATGGCATGCGCG
TGGAGCTTTCTTGTTTGTAGGGTTGGCGACAGAGGAGGGGAAAGAAGACG
TGGGGGAGGGGGAGGAGCAAGGAGAAGCAATCACACCATCAGTTGTTCGT
ACGCGTGCGCGTGCGTGTGTCAATGTGCTTGGGTAGAGTGCCAGCACATG
TGCATCGTACTCAGGCGAAAAAAGGAGGCCAACATTCACATGGCCAAAAA
TCATCACCCCCACAGCCGCGATCCCACGTGTCTCCACCGCTATGCCTGCG
CTATTGCATTTTCCATCCCAAAAGGTAGCCCGCCTGGCCCGCTTGTCGCC
CTCAGCGTCGCTCTTCCTATTGCCGTTGCCCCATCCGCCTTCATTTTCGT
CTCGACAGGAACCCGAACGCTGACCTAGATTCCAGCAGCCGAACCCTCGG
AGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:884398..886801+

>mRNA_P-fluviatile_contig8.14379.1 ID=mRNA_P-fluviatile_contig8.14379.1|Name=mRNA_P-fluviatile_contig8.14379.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig8:884398..886801+ (Porterinema fluviatile SAG_2381)
ATGCTCGTGACGGGCGGCGGAGACTCTCTCTGGAACGACCAGCGCATCCC
TTTCTGCATCACGGGCCGCCTGTCACTCCCGGATGCTCGTGACGGGCGGC
GGAGACTCTCTCTGGAACGACCAGCGCATCCCTTTCTGCATCACGGGCCG
CCTGTCACTCCCGGGTCTAGAGGTGGAGTTGGAGAAGCAGCACCTGGAGG
GCTACCACAACCGCATCGCATACTTCGGCCGGGTGCTGCCTGGCGGGGGC
GGTGACAAGCCCGATGGCTGTCCCGGGAACGACTCGCCGCCTCCTACACG
TCTCGTCGGTGTCTATGAGCACGGCGATTTCGTTCTGCTCAGGTCTAGAG
GTGGAGTTGGAGAAGCAGCACCTGGAGGGCTACCACAACCGCATCGCATA
CTTCGGCCGGGTGCTGCCTGGCGGGGGCGGTGACAAGCCCGATGGCTGTC
CCGGGAACGACTCGCCGCCTCCTACACGTCTCGTCGGTGTCTATGAGCAC
GGCGATTTCGTTCTGCTCAGGAACCCGAACGCTGACCTAGATTCCAGCAG
CCGAACCCTCGGAGGCGAACCCGAACGCTGACCTAGATTCCAGCAGCCGA
ACCCTCGGAGGC
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