mRNA_P-fluviatile_contig79.14287.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14287.1
Unique NamemRNA_P-fluviatile_contig79.14287.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig79.14287.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 9.090e-57
Identity = 88/113 (77.88%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    4 LTGSPNEHTFEYVEHLNDIALDCRESNLRASTTLHGNNLHMNRLKRAFWVEGVAGAARKAEEINRSQEPYWNVVRLLPPLPDFVFAFKRFKRPREMPRKLEALQPAGCSSAEQ 342
            +TGSP+EH FEYVEHLN IALDCRESNL  STTLHGNNLHMNR K AFWVEGV GAA KAE +NRSQE YWN+VR LPPLPDFVFAFK  KRPR+  RK+E LQPAGC++ EQ
Sbjct:   50 VTGSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
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BLAST of mRNA_P-fluviatile_contig79.14287.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.020e-55
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 GLTGSPNEHTFEYVEHLNDIALDCRESNLRASTTLHGNNLHMNRLKRAFWVEGVAGAARKAEEINRSQEPYWNVVRLLPPLPDFVFAFKRFKRPREMPRKLEALQPA 321
            G  GSPNE  F YVEHL+DIALDCRESNLR STT HGNNLHMNRLKRAF  +GVAGA RKAEEI+RSQEPYW +VR+LP LPDFVFAFK  KRPR++PRKLE LQPA
Sbjct:    9 GYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN6_9PHAE9.090e-5777.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ6_ECTSI3.020e-5579.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:484376..484720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.4058619-CDS-P-fluviatile_contig79:484375..4847201622817214.4058619-CDS-P-fluviatile_contig79:484375..484720Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 484376..484720 -
1693571529.4833875-CDS-P-fluviatile_contig79:484375..4847201693571529.4833875-CDS-P-fluviatile_contig79:484375..484720Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 484376..484720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14287.1prot_P-fluviatile_contig79.14287.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 484376..484720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14287.1

>prot_P-fluviatile_contig79.14287.1 ID=prot_P-fluviatile_contig79.14287.1|Name=mRNA_P-fluviatile_contig79.14287.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=115bp
GLTGSPNEHTFEYVEHLNDIALDCRESNLRASTTLHGNNLHMNRLKRAFW
VEGVAGAARKAEEINRSQEPYWNVVRLLPPLPDFVFAFKRFKRPREMPRK
LEALQPAGCSSAEQ*
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mRNA from alignment at P-fluviatile_contig79:484376..484720-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14287.1 ID=mRNA_P-fluviatile_contig79.14287.1|Name=mRNA_P-fluviatile_contig79.14287.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=345bp|location=Sequence derived from alignment at P-fluviatile_contig79:484376..484720- (Porterinema fluviatile SAG_2381)
GGTTTGACAGGCTCGCCCAACGAGCACACGTTCGAGTACGTCGAGCACCT
TAACGACATTGCTCTAGACTGTCGCGAAAGTAATTTGAGGGCTTCCACTA
CATTGCACGGGAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTTTGG
GTCGAGGGCGTAGCAGGCGCGGCACGCAAAGCGGAGGAGATCAATCGATC
TCAGGAACCGTACTGGAACGTCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TTGTATTCGCATTCAAGCGTTTTAAACGGCCGCGAGAAATGCCACGCAAA
CTGGAGGCGTTGCAACCTGCAGGGTGCTCCTCGGCCGAGCAATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig79:484376..484720-

>mRNA_P-fluviatile_contig79.14287.1 ID=mRNA_P-fluviatile_contig79.14287.1|Name=mRNA_P-fluviatile_contig79.14287.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=690bp|location=Sequence derived from alignment at P-fluviatile_contig79:484376..484720- (Porterinema fluviatile SAG_2381)
GGTTTGACAGGCTCGCCCAACGAGCACACGTTCGAGTACGTCGAGCACCT
TAACGACATTGCTCTAGACTGTCGCGAAAGTAATTTGAGGGCTTCCACTA
CATTGCACGGGAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTTTGG
GTCGAGGGCGTAGCAGGCGCGGCACGCAAAGCGGAGGAGATCAATCGATC
TCAGGAACCGTACTGGAACGTCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TTGTATTCGCATTCAAGCGTTTTAAACGGCCGCGAGAAATGCCACGCAAA
CTGGAGGCGTTGCAACCTGCAGGGTGCTCCTCGGCCGAGCAATGAGGTTT
GACAGGCTCGCCCAACGAGCACACGTTCGAGTACGTCGAGCACCTTAACG
ACATTGCTCTAGACTGTCGCGAAAGTAATTTGAGGGCTTCCACTACATTG
CACGGGAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTTTGGGTCGA
GGGCGTAGCAGGCGCGGCACGCAAAGCGGAGGAGATCAATCGATCTCAGG
AACCGTACTGGAACGTCGTGCGTCTTCTGCCCCCGCTGCCTGATTTTGTA
TTCGCATTCAAGCGTTTTAAACGGCCGCGAGAAATGCCACGCAAACTGGA
GGCGTTGCAACCTGCAGGGTGCTCCTCGGCCGAGCAATGA
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