prot_P-fluviatile_contig79.14253.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig79.14253.1
Unique Nameprot_P-fluviatile_contig79.14253.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length95
Homology
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 5.010e-56
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0 
Query:    1 MSGFGGG-RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            MSGFGGG RGGG RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMK+DERKQLGRIMLKGDTITLMQSV
Sbjct:    1 MSGFGGGGRGGGGRVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 95
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.110e-45
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0 
Query:    1 MSGFGGGRG---GGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            MSG+GG  G   GG R+KKVMTQPISLIFRFLQNRTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEVD+K + R Q+GRI+LKGDTITLMQ V
Sbjct:    1 MSGYGGRGGPPVGGQRMKKVMTQPISLIFRFLQNRTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVGRILLKGDTITLMQGV 97
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: A0A6U0Y1E1_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0Y1E1_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.330e-40
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 0 
Query:    1 MSGFGGGRGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQ 92
            MSG+G G GG  RVKKVMTQPI+LIFRFLQNRTR+ IWLYEN+   IEG+I+GFDEYMNLVLD+A+E+D K + R  LGRI+LKGDTITLMQ
Sbjct:    1 MSGYGPG-GGSTRVKKVMTQPINLIFRFLQNRTRILIWLYENSNTMIEGRIVGFDEYMNLVLDDAQEIDQKQETRTDLGRILLKGDTITLMQ 91
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 132 bits (331), Expect = 2.670e-38
Identity = 63/81 (77.78%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:   13 RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQS 93
            +V+K+MTQPI+LIFRFLQN+TRVQIWLYENT++RIEG+I+GFDEYMNLVLDEAEE+ MK  ERK LGRI+LKGD+ITLM +
Sbjct:    4 KVQKIMTQPINLIFRFLQNKTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEELLMKKKERKPLGRILLKGDSITLMMT 84
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: Q6AZK6_XENTR (Small nuclear ribonucleoprotein E n=2 Tax=Tetrapoda TaxID=32523 RepID=Q6AZK6_XENTR)

HSP 1 Score: 132 bits (331), Expect = 3.000e-38
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0 
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: A0A821IDN7_9NEOB (Small nuclear ribonucleoprotein E n=5 Tax=Euteleostomi TaxID=117571 RepID=A0A821IDN7_9NEOB)

HSP 1 Score: 132 bits (331), Expect = 3.000e-38
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0 
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGPKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: Q6GPZ6_XENLA (Small nuclear ribonucleoprotein E n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q6GPZ6_XENLA)

HSP 1 Score: 131 bits (330), Expect = 4.260e-38
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0 
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+RVQ+WLYE   MRIEG I+GFDEYMN+VLD+AEE+ +K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKTKSRKQLGRIMLKGDNITLLQSV 90
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: A0A669EMR4_ORENI (Small nuclear ribonucleoprotein E n=31 Tax=Clupeocephala TaxID=186625 RepID=A0A669EMR4_ORENI)

HSP 1 Score: 131 bits (329), Expect = 6.060e-38
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 0 
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
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BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: A0A553MW39_9TELE (Small nuclear ribonucleoprotein E n=2 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A553MW39_9TELE)

HSP 1 Score: 131 bits (329), Expect = 6.060e-38
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 0 
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
[Close]
BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Match: A0A673WH43_SALTR (Small nuclear ribonucleoprotein E n=29 Tax=Teleostei TaxID=32443 RepID=A0A673WH43_SALTR)

HSP 1 Score: 131 bits (329), Expect = 6.060e-38
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 0 
Query:    8 RGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV 94
            RG G +V+KVM QPI+LIFR+LQNR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEEV MK+  RK LGRIMLKGD ITL+QSV
Sbjct:    4 RGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14253.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI5.010e-5696.84Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A835YX06_9STRA5.110e-4580.41Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A6U0Y1E1_9STRA7.330e-4073.91Small nuclear ribonucleoprotein E n=1 Tax=Rhizochr... [more]
R1EMN3_EMIHU2.670e-3877.78Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
Q6AZK6_XENTR3.000e-3872.41Small nuclear ribonucleoprotein E n=2 Tax=Tetrapod... [more]
A0A821IDN7_9NEOB3.000e-3872.41Small nuclear ribonucleoprotein E n=5 Tax=Euteleos... [more]
Q6GPZ6_XENLA4.260e-3872.41Small nuclear ribonucleoprotein E n=1 Tax=Xenopus ... [more]
A0A669EMR4_ORENI6.060e-3873.56Small nuclear ribonucleoprotein E n=31 Tax=Clupeoc... [more]
A0A553MW39_9TELE6.060e-3873.56Small nuclear ribonucleoprotein E n=2 Tax=Osteoglo... [more]
A0A673WH43_SALTR6.060e-3873.56Small nuclear ribonucleoprotein E n=29 Tax=Teleost... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 27..93
e-value: 7.9E-18
score: 75.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 27..92
e-value: 6.5E-17
score: 61.0
NoneNo IPR availableGENE3D2.30.30.100coord: 7..94
e-value: 3.2E-40
score: 137.9
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 13..93
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 20..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:156458..158861 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14253.1mRNA_P-fluviatile_contig79.14253.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig79 156458..158861 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig79.14253.1 ID=prot_P-fluviatile_contig79.14253.1|Name=mRNA_P-fluviatile_contig79.14253.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=95bp
MSGFGGGRGGGARVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQ
ILGFDEYMNLVLDEAEEVDMKSDERKQLGRIMLKGDTITLMQSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf