mRNA_P-fluviatile_contig79.14247.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14247.1
Unique NamemRNA_P-fluviatile_contig79.14247.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:75420..76106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14247.1prot_P-fluviatile_contig79.14247.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 75429..75878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.451038-UTR-P-fluviatile_contig79:75419..754281622817209.451038-UTR-P-fluviatile_contig79:75419..75428Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 75420..75428 +
1693571518.3017933-UTR-P-fluviatile_contig79:75419..754281693571518.3017933-UTR-P-fluviatile_contig79:75419..75428Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 75420..75428 +
1622817209.480764-UTR-P-fluviatile_contig79:75878..761061622817209.480764-UTR-P-fluviatile_contig79:75878..76106Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 75879..76106 +
1693571518.3196504-UTR-P-fluviatile_contig79:75878..761061693571518.3196504-UTR-P-fluviatile_contig79:75878..76106Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 75879..76106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.4671397-CDS-P-fluviatile_contig79:75428..758781622817209.4671397-CDS-P-fluviatile_contig79:75428..75878Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 75429..75878 +
1693571518.309907-CDS-P-fluviatile_contig79:75428..758781693571518.309907-CDS-P-fluviatile_contig79:75428..75878Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 75429..75878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14247.1

>prot_P-fluviatile_contig79.14247.1 ID=prot_P-fluviatile_contig79.14247.1|Name=mRNA_P-fluviatile_contig79.14247.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=150bp
MLAGTLALSAEKASLHLAPSFSLLDKPQVQVELQSVRVRVRVSVTLTLSS
CSIGHVRRSHQSSALLQRLISSNMRRSRTRSTENIIFQRKVDRKVSWAQL
QTSIDAKLATKELGEFFPMPAFLALALIPLLSLKIRPRGHVKHSVETGW*
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mRNA from alignment at P-fluviatile_contig79:75420..76106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14247.1 ID=mRNA_P-fluviatile_contig79.14247.1|Name=mRNA_P-fluviatile_contig79.14247.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=687bp|location=Sequence derived from alignment at P-fluviatile_contig79:75420..76106+ (Porterinema fluviatile SAG_2381)
AGATAGTGAATGCTGGCTGGCACACTGGCTCTCTCGGCCGAAAAGGCTAG
TCTACATCTCGCTCCTTCGTTCTCGCTATTAGATAAGCCGCAAGTTCAAG
TCGAGCTCCAATCAGTTAGGGTTAGGGTTAGGGTTAGCGTAACCCTAACC
CTAAGTTCATGTTCCATTGGTCACGTTCGACGTTCGCATCAGTCCTCTGC
TCTCCTTCAACGCCTGATATCTTCGAATATGCGGCGCTCGCGTACACGAA
GTACCGAAAACATTATTTTCCAACGTAAAGTTGACCGCAAAGTAAGTTGG
GCCCAACTTCAGACCTCGATTGATGCAAAACTTGCAACGAAAGAGCTCGG
TGAGTTCTTTCCAATGCCGGCATTTTTGGCCTTGGCGCTCATCCCGCTTC
TGAGCTTGAAGATTCGGCCTAGGGGGCATGTTAAACACTCCGTAGAAACG
GGTTGGTGATTTTGCTCGTCTGGTCCCTCATACGTCATATTTGATGAAGC
CACTAGATAGACCGCCTTCGTGTGGGCGGCTCTTGTCCGTTTTCCTAAGC
GGGTTGCATATCTTGAACTAAAATCTCAGCTCGCTGGCTGCTGTTGGTTA
AGGAGGTAACCCCTTTGATACTCTATTTTACGACCCCGCGGTGTTGTATG
GGGGAGGCTACGTACAGCTAGAGTTGTGCCCGACGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig79:75420..76106+

>mRNA_P-fluviatile_contig79.14247.1 ID=mRNA_P-fluviatile_contig79.14247.1|Name=mRNA_P-fluviatile_contig79.14247.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=900bp|location=Sequence derived from alignment at P-fluviatile_contig79:75420..76106+ (Porterinema fluviatile SAG_2381)
ATGCTGGCTGGCACACTGGCTCTCTCGGCCGAAAAGGCTAGTCTACATCT
CGCTCCTTCGTTCTCGCTATTAGATAAGCCGCAAGTTCAAGTCGAGCTCC
AATCAGTTAGGGTTAGGGTTAGGGTTAGCGTAACCCTAACCCTAAGTTCA
TGTTCCATTGGTCACGTTCGACGTTCGCATCAGTCCTCTGCTCTCCTTCA
ACGCCTGATATCTTCGAATATGCGGCGCTCGCGTACACGAAGTACCGAAA
ACATTATTTTCCAACGTAAAGTTGACCGCAAAGTAAGTTGGGCCCAACTT
CAGACCTCGATTGATGCAAAACTTGCAACGAAAGAGCTCGGTGAGTTCTT
TCCAATGCCGGCATTTTTGGCCTTGGCGCTCATCCCGCTTCTGAGCTTGA
AGATTCGGCCTAGGGGGCATGTTAAACACTCCGTAGAAACGGGTTGGTGA
ATGCTGGCTGGCACACTGGCTCTCTCGGCCGAAAAGGCTAGTCTACATCT
CGCTCCTTCGTTCTCGCTATTAGATAAGCCGCAAGTTCAAGTCGAGCTCC
AATCAGTTAGGGTTAGGGTTAGGGTTAGCGTAACCCTAACCCTAAGTTCA
TGTTCCATTGGTCACGTTCGACGTTCGCATCAGTCCTCTGCTCTCCTTCA
ACGCCTGATATCTTCGAATATGCGGCGCTCGCGTACACGAAGTACCGAAA
ACATTATTTTCCAACGTAAAGTTGACCGCAAAGTAAGTTGGGCCCAACTT
CAGACCTCGATTGATGCAAAACTTGCAACGAAAGAGCTCGGTGAGTTCTT
TCCAATGCCGGCATTTTTGGCCTTGGCGCTCATCCCGCTTCTGAGCTTGA
AGATTCGGCCTAGGGGGCATGTTAAACACTCCGTAGAAACGGGTTGGTGA
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