mRNA_P-fluviatile_contig78.14202.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14202.1
Unique NamemRNA_P-fluviatile_contig78.14202.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:194527..195454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14202.1prot_P-fluviatile_contig78.14202.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 194528..195454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.1972475-CDS-P-fluviatile_contig78:194527..1946081622817203.1972475-CDS-P-fluviatile_contig78:194527..194608Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 194528..194608 -
1693571506.739221-CDS-P-fluviatile_contig78:194527..1946081693571506.739221-CDS-P-fluviatile_contig78:194527..194608Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 194528..194608 -
1622817203.2095194-CDS-P-fluviatile_contig78:195000..1951391622817203.2095194-CDS-P-fluviatile_contig78:195000..195139Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 195001..195139 -
1693571506.7508764-CDS-P-fluviatile_contig78:195000..1951391693571506.7508764-CDS-P-fluviatile_contig78:195000..195139Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 195001..195139 -
1622817203.2197387-CDS-P-fluviatile_contig78:195371..1954541622817203.2197387-CDS-P-fluviatile_contig78:195371..195454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 195372..195454 -
1693571506.7650552-CDS-P-fluviatile_contig78:195371..1954541693571506.7650552-CDS-P-fluviatile_contig78:195371..195454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 195372..195454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14202.1

>prot_P-fluviatile_contig78.14202.1 ID=prot_P-fluviatile_contig78.14202.1|Name=mRNA_P-fluviatile_contig78.14202.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
KYKHATHLQATADRELHTVGPRDYCFSRCIETPALERQVRTMSTTTMVNS
STTLTTAMSQLGGTARPTTSRRMKRSGAQVRRPRSGSGLRVEGCSRSHLR
R
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mRNA from alignment at P-fluviatile_contig78:194527..195454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14202.1 ID=mRNA_P-fluviatile_contig78.14202.1|Name=mRNA_P-fluviatile_contig78.14202.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=928bp|location=Sequence derived from alignment at P-fluviatile_contig78:194527..195454- (Porterinema fluviatile SAG_2381)
AAGTATAAGCATGCTACCCACTTACAGGCGACGGCAGACCGGGAGCTGCA
CACGGTGGGGCCCCGTGATTATTGTTTTTCTCGGCGAGTGCAGTATTTCT
TGGCGCGCGCCATGTGTTGATTTGATGTCAAAGGTTACTGGTCGGCACTC
TATTGCCGTACCTGACAATCACGGATATCTGCATGGTGTGAACCCCTCCT
GGTTTGTGTGGAATCGGTTCATTTTGGCGAGGGCTTTGGGCGCGTTCAAT
ACGTCCGCGTAGAAATTTTTCATCGCACCCTACGCATTCATTCCTGTTCG
CCAAACGTTTTGTAGATGCATCGAGACGCCGGCATTGGAACGACAAGTGA
GGACGATGTCGACCACTACGATGGTGAATTCGAGTACGACTCTGACGACA
GCGATGTCACAACTGGGTGGGACAGCCAGGCCGACGACTTCTCGTCGGAT
GAAGGTATGCCGGCTAAAGAATTGATTTGCAGTCGCTGTGTGTTGTTGTA
GACCTTGTTGCCTCAGGTCCTGTTCTTCTTCGTGATGAAGGCTACGCGTG
AATCAGGTTGTGTAAAGGCGTGGCATCCTCGCGTGAAGGTATGCGCGTGC
GGGGAGGACAGGCGTCCGAGTCTTTCGGCGCTGTGTTCCAAGATTCTCAG
AAAATGCCCCCCGGAAATGTTTCTGATTCTGTTTTTCAAGATTCTCAGAA
AATGCCCCCCGGAAATGTATCTGATTCTGTTGACCCAGTCTTGTCTTCAA
ACCTCACCTCACGCCCCCTCCGCTTGCCCCCGACTGTGATGTCCCTATGC
GTTTCGGTGTGTTTGCCTATCTTTTTTTTTTTTTCAAAGATGTCAGCGAT
CCGGTGCACAAGTCAGACGTCCACGATCTGGATCTGGACTACGAGTCGAA
GGGTGTTCGCGCTCCCACCTTCGCCGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:194527..195454-

>mRNA_P-fluviatile_contig78.14202.1 ID=mRNA_P-fluviatile_contig78.14202.1|Name=mRNA_P-fluviatile_contig78.14202.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig78:194527..195454- (Porterinema fluviatile SAG_2381)
AAGTATAAGCATGCTACCCACTTACAGGCGACGGCAGACCGGGAGCTGCA
CACGGTGGGGCCCCGTGATTATTGTTTTTCTCGAAGTATAAGCATGCTAC
CCACTTACAGGCGACGGCAGACCGGGAGCTGCACACGGTGGGGCCCCGTG
ATTATTGTTTTTCTCGATGCATCGAGACGCCGGCATTGGAACGACAAGTG
AGGACGATGTCGACCACTACGATGGTGAATTCGAGTACGACTCTGACGAC
AGCGATGTCACAACTGGGTGGGACAGCCAGGCCGACGACTTCTCGTCGGA
TGAAGATGCATCGAGACGCCGGCATTGGAACGACAAGTGAGGACGATGTC
GACCACTACGATGGTGAATTCGAGTACGACTCTGACGACAGCGATGTCAC
AACTGGGTGGGACAGCCAGGCCGACGACTTCTCGTCGGATGAAGCGATCC
GGTGCACAAGTCAGACGTCCACGATCTGGATCTGGACTACGAGTCGAAGG
GTGTTCGCGCTCCCACCTTCGCCGACGATCCGGTGCACAAGTCAGACGTC
CACGATCTGGATCTGGACTACGAGTCGAAGGGTGTTCGCGCTCCCACCTT
CGCCGA
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