mRNA_P-fluviatile_contig78.14201.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14201.1
Unique NamemRNA_P-fluviatile_contig78.14201.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig78.14201.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.590e-14
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 AGLRTFNMYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELK 165
            AGL+ F+MYRLIS+ VKPLQLGEPGRQKV       QRE + TPTDALDL+SELK
Sbjct:   21 AGLKQFDMYRLISELVKPLQLGEPGRQKV-------QRECWSTPTDALDLVSELK 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE2.590e-1470.91SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:193052..193422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14201.1prot_P-fluviatile_contig78.14201.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 193052..193401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.1295397-CDS-P-fluviatile_contig78:193051..1931321622817203.1295397-CDS-P-fluviatile_contig78:193051..193132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 193052..193132 -
1693571506.7089207-CDS-P-fluviatile_contig78:193051..1931321693571506.7089207-CDS-P-fluviatile_contig78:193051..193132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 193052..193132 -
1622817203.1418865-CDS-P-fluviatile_contig78:193338..1934011622817203.1418865-CDS-P-fluviatile_contig78:193338..193401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 193339..193401 -
1693571506.718403-CDS-P-fluviatile_contig78:193338..1934011693571506.718403-CDS-P-fluviatile_contig78:193338..193401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 193339..193401 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.1588407-UTR-P-fluviatile_contig78:193401..1934221622817203.1588407-UTR-P-fluviatile_contig78:193401..193422Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 193402..193422 -
1693571506.7302709-UTR-P-fluviatile_contig78:193401..1934221693571506.7302709-UTR-P-fluviatile_contig78:193401..193422Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 193402..193422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14201.1

>prot_P-fluviatile_contig78.14201.1 ID=prot_P-fluviatile_contig78.14201.1|Name=mRNA_P-fluviatile_contig78.14201.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=48bp
MYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELK
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mRNA from alignment at P-fluviatile_contig78:193052..193422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14201.1 ID=mRNA_P-fluviatile_contig78.14201.1|Name=mRNA_P-fluviatile_contig78.14201.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=371bp|location=Sequence derived from alignment at P-fluviatile_contig78:193052..193422- (Porterinema fluviatile SAG_2381)
GCGGGGCTGAGAACGTTTAACATGTACAGGCTGATTTCCGATCGTGTGAA
GCCCCTTCAGCTTGGAGAGCCCGGTCGACAGAAGGTGCGCAAATCGTGTG
ACGTATTCGTACCGTTTGTTCATGGTCGAAGGGAGTGTGCTTCCGTGTTT
TCGTGGACGTCGCAAACGGGGGCTTTGACGGAGTACTGCCGGAGAATTGA
AAGTTGTACGTTGTCGCTGCATGTTTTGACATTCTTCGTCTTCCTTCGAC
ATGCCGGCGCAACGTTTCTGAACATGGTATTGGGTAATAGGTCAGGAACA
TGGTCGCGAAGGTGCAGCGCGAGCTCTTCTGTACGCCGACCGACGCCCTC
GATTTGATATCAGAGTTGAAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:193052..193422-

>mRNA_P-fluviatile_contig78.14201.1 ID=mRNA_P-fluviatile_contig78.14201.1|Name=mRNA_P-fluviatile_contig78.14201.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=288bp|location=Sequence derived from alignment at P-fluviatile_contig78:193052..193422- (Porterinema fluviatile SAG_2381)
ATGTACAGGCTGATTTCCGATCGTGTGAAGCCCCTTCAGCTTGGAGAGCC
CGGTCGACAGAAGATGTACAGGCTGATTTCCGATCGTGTGAAGCCCCTTC
AGCTTGGAGAGCCCGGTCGACAGAAGGTCAGGAACATGGTCGCGAAGGTG
CAGCGCGAGCTCTTCTGTACGCCGACCGACGCCCTCGATTTGATATCAGA
GTTGAAAGTCAGGAACATGGTCGCGAAGGTGCAGCGCGAGCTCTTCTGTA
CGCCGACCGACGCCCTCGATTTGATATCAGAGTTGAAA
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