mRNA_P-fluviatile_contig76.14120.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14120.1
Unique NamemRNA_P-fluviatile_contig76.14120.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig76.14120.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.070e-14
Identity = 49/90 (54.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   55 RVESSSLADSGLNSRVSAINRSSVPAVNFDSIRIESGTFGSQSFVPGTGSGXXXXXXXXPPPPTAASKWLGNVASGNPLIAGAGISDTGE 324
            RV SS L DSGL   VS ++RSSV A NF SI I SG  GSQSF P              PP   +S+W G+ ASGN LI GAGISDTGE
Sbjct:  113 RVGSSGLLDSGLTPDVSTVHRSSVGAANFGSIGIGSGAPGSQSFFP--------------PPSAPSSEWWGHAASGNTLIPGAGISDTGE 188
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BLAST of mRNA_P-fluviatile_contig76.14120.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.680e-12
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:   67 SSLADSGLNSRVSAINRSSVPAVNFDSIRIESGTFGSQSFVPGTGSGXXXXXXXXPPPPTAASKWLGNVASGNPLIAGAGISDTGE 324
            SS+A++GLNS  +A+NRSS    +F S+ + S   GSQSF+PG    XXXXXXXX P PTA+S+W  NVASG  LI GAGI++ GE
Sbjct:    8 SSVANTGLNSHDTAVNRSSAGVTSFGSVGMGSRALGSQSFIPGXXXXXXXXXXXXXPAPTASSRWWENVASGTTLIPGAGITEPGE 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L715_9PHAE8.070e-1454.44CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2M6_9PHAE1.680e-1256.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:534317..534795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.1396902-CDS-P-fluviatile_contig76:534316..5346491622817197.1396902-CDS-P-fluviatile_contig76:534316..534649Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 534317..534649 +
1693571473.2123668-CDS-P-fluviatile_contig76:534316..5346491693571473.2123668-CDS-P-fluviatile_contig76:534316..534649Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 534317..534649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.1511102-UTR-P-fluviatile_contig76:534649..5347951622817197.1511102-UTR-P-fluviatile_contig76:534649..534795Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 534650..534795 +
1693571473.2228415-UTR-P-fluviatile_contig76:534649..5347951693571473.2228415-UTR-P-fluviatile_contig76:534649..534795Porterinema fluviatile SAG_2381UTRP-fluviatile_contig76 534650..534795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14120.1prot_P-fluviatile_contig76.14120.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 534317..534649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14120.1

>prot_P-fluviatile_contig76.14120.1 ID=prot_P-fluviatile_contig76.14120.1|Name=mRNA_P-fluviatile_contig76.14120.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
WDSGRYGWRCPRPWRVQQRVESSSLADSGLNSRVSAINRSSVPAVNFDSI
RIESGTFGSQSFVPGTGSGDFGSQSSVPPPPTAASKWLGNVASGNPLIAG
AGISDTGEFS*
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mRNA from alignment at P-fluviatile_contig76:534317..534795+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14120.1 ID=mRNA_P-fluviatile_contig76.14120.1|Name=mRNA_P-fluviatile_contig76.14120.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=479bp|location=Sequence derived from alignment at P-fluviatile_contig76:534317..534795+ (Porterinema fluviatile SAG_2381)
TGGGACAGCGGGAGGTACGGGTGGCGATGCCCAAGGCCTTGGCGTGTCCA
GCAGCGGGTTGAGAGTAGTAGTCTTGCAGACTCAGGCTTGAACTCTCGTG
TATCTGCTATAAATCGTTCCTCTGTTCCTGCAGTAAACTTTGATTCGATT
CGAATTGAAAGTGGGACGTTCGGAAGTCAGTCCTTCGTTCCGGGAACTGG
GAGTGGCGATTTCGGTAGCCAGTCTTCCGTTCCACCCCCGCCTACTGCTG
CGAGCAAGTGGTTGGGCAATGTCGCCAGCGGAAACCCACTGATAGCTGGG
GCCGGCATTTCTGACACAGGAGAGTTTTCGTGATAGCGGTGTGTATCGAC
TGAGTTACGCAGATATATTTCACTGGATGATTCGAATATTTGAGTTGTCG
GCACAACACACAGTTGCGGAGCTTTAGCAGTTGTTCTGGTTTGTCCTGCA
ATTGTTCTAGTACCTGACGTACAATCTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:534317..534795+

>mRNA_P-fluviatile_contig76.14120.1 ID=mRNA_P-fluviatile_contig76.14120.1|Name=mRNA_P-fluviatile_contig76.14120.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig76:534317..534795+ (Porterinema fluviatile SAG_2381)
TGGGACAGCGGGAGGTACGGGTGGCGATGCCCAAGGCCTTGGCGTGTCCA
GCAGCGGGTTGAGAGTAGTAGTCTTGCAGACTCAGGCTTGAACTCTCGTG
TATCTGCTATAAATCGTTCCTCTGTTCCTGCAGTAAACTTTGATTCGATT
CGAATTGAAAGTGGGACGTTCGGAAGTCAGTCCTTCGTTCCGGGAACTGG
GAGTGGCGATTTCGGTAGCCAGTCTTCCGTTCCACCCCCGCCTACTGCTG
CGAGCAAGTGGTTGGGCAATGTCGCCAGCGGAAACCCACTGATAGCTGGG
GCCGGCATTTCTGACACAGGAGAGTTTTCGTGATGGGACAGCGGGAGGTA
CGGGTGGCGATGCCCAAGGCCTTGGCGTGTCCAGCAGCGGGTTGAGAGTA
GTAGTCTTGCAGACTCAGGCTTGAACTCTCGTGTATCTGCTATAAATCGT
TCCTCTGTTCCTGCAGTAAACTTTGATTCGATTCGAATTGAAAGTGGGAC
GTTCGGAAGTCAGTCCTTCGTTCCGGGAACTGGGAGTGGCGATTTCGGTA
GCCAGTCTTCCGTTCCACCCCCGCCTACTGCTGCGAGCAAGTGGTTGGGC
AATGTCGCCAGCGGAAACCCACTGATAGCTGGGGCCGGCATTTCTGACAC
AGGAGAGTTTTCGTGA
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