mRNA_P-fluviatile_contig12.1346.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1346.1
Unique NamemRNA_P-fluviatile_contig12.1346.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1346.1 vs. uniprot
Match: A0A6H5K3V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.840e-15
Identity = 51/121 (42.15%), Postives = 66/121 (54.55%), Query Frame = 3 
Query:    3 VATPLALHAVAEMESAPLPDLMAGADKTIGWLAQRQVRSWGRLINEGYSDPKRRALQD------------------------SMWKQLYIFCTSPRRLTHGLTGLSPRLVTKRDAVRFVTP 293
            VAT LA+HA+AE+E APL ++  GA +TI   A RQVRSW +L   G+    +RA Q+                         MW+ LY F TSPRRL HGLT + P  +T  DA R++TP
Sbjct:  330 VATLLAVHAIAELEHAPLTEV--GAPETIACRAVRQVRSWSKLQTGGFGARNQRAFQEVCMSILFPYAIYSYIPILFTITLNGMWRHLYGFITSPRRLAHGLTAMDPASITNADARRYLTP 448
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BLAST of mRNA_P-fluviatile_contig12.1346.1 vs. uniprot
Match: A0A6H5KHD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD1_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.860e-6
Identity = 31/97 (31.96%), Postives = 51/97 (52.58%), Query Frame = 3 
Query:    3 VATPLALHAVAEMESAPLPDLMAGADKTIGWLAQRQVRSWGRLINEGYSDPKRRALQDSMWKQLYIFCTSPRRLTHGLTGLSPRLVTKRDAVRFVTP 293
            V TP  LHA  ++ + P+ ++  G  +TI     R+ R+W +L   G+     RA+Q+S+W  L+ F T PRR T  +  +      K + +RF+ P
Sbjct:  121 VVTPALLHAANDIAALPVNEI--GTHETIVCKVTRKSRAWIKLSAGGFGSANARAIQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAP 215
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BLAST of mRNA_P-fluviatile_contig12.1346.1 vs. uniprot
Match: A0A6H5K103_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K103_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.890e-6
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:    3 VATPLALHAVAEMESAPLPDLMAGADKTIGWLAQRQVRSWGRLINEGYSDPKRRALQDS 179
            VATPLALHA+AE+E APL D+  GA +TI   A RQVRSW +L   G+    +RA Q++
Sbjct:  298 VATPLALHAIAELEHAPLTDV--GAPETIACRAVRQVRSWFKLQTGGFGAKNQRAFQEA 354
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BLAST of mRNA_P-fluviatile_contig12.1346.1 vs. uniprot
Match: A0A6H5K7V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.530e-6
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:    3 VATPLALHAVAEMESAPLPDLMAGADKTIGWLAQRQVRSWGRLINEGYSDPKRRALQDS 179
            VATPLALHA+AE+E APL D+  GA +TI   A RQVRSW +L   G     +RA Q++
Sbjct:  269 VATPLALHAIAELEHAPLTDV--GAPETIACRAVRQVRSWSKLQTGGLGARNQRAFQEA 325
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K3V6_9PHAE1.840e-1542.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHD1_9PHAE5.860e-631.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K103_9PHAE5.890e-654.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V5_9PHAE9.530e-654.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:436048..437637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size923
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1346.1prot_P-fluviatile_contig12.1346.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 436086..437166 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.163892-UTR-P-fluviatile_contig12:436047..4360851622815492.163892-UTR-P-fluviatile_contig12:436047..436085Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 436048..436085 +
1693562052.8079126-UTR-P-fluviatile_contig12:436047..4360851693562052.8079126-UTR-P-fluviatile_contig12:436047..436085Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 436048..436085 +
1622815492.2295775-UTR-P-fluviatile_contig12:437166..4376371622815492.2295775-UTR-P-fluviatile_contig12:437166..437637Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 437167..437637 +
1693562052.856473-UTR-P-fluviatile_contig12:437166..4376371693562052.856473-UTR-P-fluviatile_contig12:437166..437637Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 437167..437637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.1794136-CDS-P-fluviatile_contig12:436085..4362251622815492.1794136-CDS-P-fluviatile_contig12:436085..436225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 436086..436225 +
1693562052.8236392-CDS-P-fluviatile_contig12:436085..4362251693562052.8236392-CDS-P-fluviatile_contig12:436085..436225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 436086..436225 +
1622815492.1907902-CDS-P-fluviatile_contig12:436595..4367111622815492.1907902-CDS-P-fluviatile_contig12:436595..436711Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 436596..436711 +
1693562052.8342676-CDS-P-fluviatile_contig12:436595..4367111693562052.8342676-CDS-P-fluviatile_contig12:436595..436711Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 436596..436711 +
1622815492.2134519-CDS-P-fluviatile_contig12:437008..4371661622815492.2134519-CDS-P-fluviatile_contig12:437008..437166Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 437009..437166 +
1693562052.8438973-CDS-P-fluviatile_contig12:437008..4371661693562052.8438973-CDS-P-fluviatile_contig12:437008..437166Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 437009..437166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1346.1

>prot_P-fluviatile_contig12.1346.1 ID=prot_P-fluviatile_contig12.1346.1|Name=mRNA_P-fluviatile_contig12.1346.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=138bp
MESAPLPDLMAGADKTIGWLAQRQVRSWGRLINEGYSDPKRRALQDSMWK
QLYIFCTSPRRLTHGLTGLSPRLVTKRDAVRFVTPSEEGGDPESEERRRN
PGPQHSIGRDGAGGEPLRPKARARVSPSLVLMVAQGS*
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mRNA from alignment at P-fluviatile_contig12:436048..437637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1346.1 ID=mRNA_P-fluviatile_contig12.1346.1|Name=mRNA_P-fluviatile_contig12.1346.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1590bp|location=Sequence derived from alignment at P-fluviatile_contig12:436048..437637+ (Porterinema fluviatile SAG_2381)
AGGTTGCGACGCCGCTCGCGCTCCACGCGGTGGCGGAGATGGAGAGCGCT
CCCCTCCCGGACCTGATGGCTGGTGCGGACAAGACCATTGGGTGGCTTGC
CCAGCGCCAGGTCCGAAGCTGGGGCCGGCTGATTAATGAAGGATACAGCG
ACCCGAAGAGACGGGCATTACAGGATAGGTAAGTCGTGTGTACCCGTTAC
CCTCGGGGAAGAGACGTGTTCGTCTTGATTCAAACTTTAGCAGTCGTTTC
GAGGACTTTATCTCATACTTGTGTCTGTATGTTTTGCATTTGCCAGAAAT
GTAGATGAGTTCCCATGACAGAGTGAGCCTCTGTATTCCGTGCCATTTGA
GAGAGGGCATCTTTTTGTGTTCTTTCCTGAAGATTTTTTTCCATGGATAT
ATTTGCTTCTCTTCATCGGAGTCGGAGTCGGTCGAAGTTTGGTCGAGCAA
GGCGGACAGGGCGCGTTATGTATCCGCGTAAGTGTCGCTGGTGTTGTCAC
ACATCACTCCTCCGTTCTCCCCGCTATTTTTTCCCGCCTGTCCGCCAGCA
TGTGGAAGCAGCTCTACATCTTCTGTACCTCGCCACGCCGGCTGACCCAC
GGGCTGACTGGGCTCTCCCCTCGCCTCGTAACGAAGCGGGACGCCGTCCG
CTTCGTCACGCCATGTACGGAGGGTAAGGAGCTATGTGATACATGGGTTG
CGTTTGTGTTCCTTTTTCTTTTGAAGGCTGAGACATGGGTCAGGAACCAG
CTTCACACATTTGCCTCGAGTTTGGGCCCTGGGAATTATTGCTTTCCTTG
GTTGGCTCCCACCGGGTGACTCGACCAGCATACTGGTGGGCGCCCTCTCG
GCTCTGTGCGCAATTCGGTGGTCCTCGTCTCCAAATTGCTTTGTCTCCGC
ACCCCATTTGCTCATGACCATACCACCGTTTTCTTGATACATGTATCGTT
TGTTCGAAAAGCGGAGGAGGGCGGAGACCCGGAGAGCGAAGAGCGGCGAC
GAAACCCAGGACCCCAACATTCTATTGGCCGAGACGGCGCCGGCGGCGAA
CCTCTCCGACCGAAGGCGCGCGCCCGCGTGTCTCCATCTCTTGTGCTGAT
GGTAGCGCAGGGTAGTTGAGCCACTTCAGCAGCGGAAGAGCCGTGCGCGC
AACAGCATGTCATGTCTCAGGAGCTGCAAGGGCTATCAATTTGCTTCCTG
TGCATGTAAGCTTTGGATCGTTGATGCCCCCGGCGCCAATGAGGGTGCAT
GTATCCCAACCGGCTTGCAAGGGGGGAAACAAACGGAAGGTCATACCTTC
TCCTGATCATTATGGGCGGCGTTTTTGGACTTAGGCTTTGGATTGAGTTT
GCGCTAATAAAGGTGTCAAGATTGTCGCGACATGAGCGTAGGGAAGCCGT
TGTGTTGAATCGTGGGAGACTCTCCAATTGCTTCAAATGTTTACGCTCGG
CTTTTTCGAGTACAAAGTGTGGTGTTCTCGATCGTTTTTGTGCGTCCTTG
GTTTGTTGTGCGAATTTTGGGGAACTTGGGACACGCGAAGGGATCTCGTT
TGGTTCCGACGCCGGCTACCTTGGTTTCCGGGGGGGGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:436048..437637+

>mRNA_P-fluviatile_contig12.1346.1 ID=mRNA_P-fluviatile_contig12.1346.1|Name=mRNA_P-fluviatile_contig12.1346.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=828bp|location=Sequence derived from alignment at P-fluviatile_contig12:436048..437637+ (Porterinema fluviatile SAG_2381)
ATGGAGAGCGCTCCCCTCCCGGACCTGATGGCTGGTGCGGACAAGACCAT
TGGGTGGCTTGCCCAGCGCCAGGTCCGAAGCTGGGGCCGGCTGATTAATG
AAGGATACAGCGACCCGAAGAGACGGGCATTACAGGATAGATGGAGAGCG
CTCCCCTCCCGGACCTGATGGCTGGTGCGGACAAGACCATTGGGTGGCTT
GCCCAGCGCCAGGTCCGAAGCTGGGGCCGGCTGATTAATGAAGGATACAG
CGACCCGAAGAGACGGGCATTACAGGATAGCATGTGGAAGCAGCTCTACA
TCTTCTGTACCTCGCCACGCCGGCTGACCCACGGGCTGACTGGGCTCTCC
CCTCGCCTCGTAACGAAGCGGGACGCCGTCCGCTTCGTCACGCCATCATG
TGGAAGCAGCTCTACATCTTCTGTACCTCGCCACGCCGGCTGACCCACGG
GCTGACTGGGCTCTCCCCTCGCCTCGTAACGAAGCGGGACGCCGTCCGCT
TCGTCACGCCATCGGAGGAGGGCGGAGACCCGGAGAGCGAAGAGCGGCGA
CGAAACCCAGGACCCCAACATTCTATTGGCCGAGACGGCGCCGGCGGCGA
ACCTCTCCGACCGAAGGCGCGCGCCCGCGTGTCTCCATCTCTTGTGCTGA
TGGTAGCGCAGGGTAGTTGACGGAGGAGGGCGGAGACCCGGAGAGCGAAG
AGCGGCGACGAAACCCAGGACCCCAACATTCTATTGGCCGAGACGGCGCC
GGCGGCGAACCTCTCCGACCGAAGGCGCGCGCCCGCGTGTCTCCATCTCT
TGTGCTGATGGTAGCGCAGGGTAGTTGA
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