mRNA_P-fluviatile_contig12.1340.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1340.1
Unique NamemRNA_P-fluviatile_contig12.1340.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1340.1 vs. uniprot
Match: A0A6H5K9W0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.050e-18
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    4 LDRNPAVTNIHAHLEGEQYVLFPASATQEERLAIITNSTHSPLME*FARPRHDCFDNLTILDYYGQYTVTRPKKD-AQPLTVAP 252
            + R+PAVT+IHAHLEGE  V++P++AT E R     ++  S LM  F RP  D FDNLT+LDYY  YTVT+ KKD   P + AP
Sbjct:    7 MSRDPAVTSIHAHLEGENNVMYPSNATDEVRRQCAEDAV-SDLMRYFKRPLDDLFDNLTLLDYYELYTVTKKKKDDPMPTSAAP 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9W0_9PHAE3.050e-1853.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:407945..408242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size298
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.1019561-CDS-P-fluviatile_contig12:407944..4080851622815492.1019561-CDS-P-fluviatile_contig12:407944..408085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 407945..408085 +
1693562052.7813787-CDS-P-fluviatile_contig12:407944..4080851693562052.7813787-CDS-P-fluviatile_contig12:407944..408085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 407945..408085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815492.1167247-UTR-P-fluviatile_contig12:408085..4082421622815492.1167247-UTR-P-fluviatile_contig12:408085..408242Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 408086..408242 +
1693562052.793486-UTR-P-fluviatile_contig12:408085..4082421693562052.793486-UTR-P-fluviatile_contig12:408085..408242Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 408086..408242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1340.1prot_P-fluviatile_contig12.1340.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 407945..408085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1340.1

>prot_P-fluviatile_contig12.1340.1 ID=prot_P-fluviatile_contig12.1340.1|Name=mRNA_P-fluviatile_contig12.1340.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=47bp
VLDRNPAVTNIHAHLEGEQYVLFPASATQEERLAIITNSTHSPLME*
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mRNA from alignment at P-fluviatile_contig12:407945..408242+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1340.1 ID=mRNA_P-fluviatile_contig12.1340.1|Name=mRNA_P-fluviatile_contig12.1340.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=298bp|location=Sequence derived from alignment at P-fluviatile_contig12:407945..408242+ (Porterinema fluviatile SAG_2381)
GTTTTGGATAGAAATCCTGCTGTGACGAATATTCACGCTCATCTAGAAGG
GGAACAATATGTTTTGTTTCCGGCTAGCGCTACCCAAGAGGAACGTCTGG
CAATAATAACCAATAGTACGCACTCACCCTTGATGGAGTAATTTGCTCGC
CCTCGCCATGACTGCTTCGACAATCTAACGATCCTTGACTACTATGGACA
GTACACTGTGACACGGCCGAAAAAGGACGCACAGCCCTTAACTGTTGCAC
CTCCGTATCTTTCTTGATGCTTACAACAACCAACACAGCTTTTGCAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:407945..408242+

>mRNA_P-fluviatile_contig12.1340.1 ID=mRNA_P-fluviatile_contig12.1340.1|Name=mRNA_P-fluviatile_contig12.1340.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=282bp|location=Sequence derived from alignment at P-fluviatile_contig12:407945..408242+ (Porterinema fluviatile SAG_2381)
GTTTTGGATAGAAATCCTGCTGTGACGAATATTCACGCTCATCTAGAAGG
GGAACAATATGTTTTGTTTCCGGCTAGCGCTACCCAAGAGGAACGTCTGG
CAATAATAACCAATAGTACGCACTCACCCTTGATGGAGTAAGTTTTGGAT
AGAAATCCTGCTGTGACGAATATTCACGCTCATCTAGAAGGGGAACAATA
TGTTTTGTTTCCGGCTAGCGCTACCCAAGAGGAACGTCTGGCAATAATAA
CCAATAGTACGCACTCACCCTTGATGGAGTAA
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