mRNA_P-fluviatile_contig12.1333.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1333.1
Unique NamemRNA_P-fluviatile_contig12.1333.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1333.1 vs. uniprot
Match: A0A6H5J8T6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8T6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.370e-5
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:  248 RFATDGAFVKMIQDDLRDGKKIMVCCGSSKELRGLREIALEIVPESKIGIYYADS 412
            RF  D A  + IQ   ++ K+I +C GS++EL+ L ++AL IV E K+GIYY +S
Sbjct:    3 RFKHDAAIARKIQ---QENKQIGMCRGSAQELKTLEKLALAIVGEEKVGIYYGNS 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8T6_9PHAE3.370e-545.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:241160..241658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001320.1
Hectar predicted targeting categoryother localisation
Exons1
Model size499
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.890014-CDS-P-fluviatile_contig12:241159..2415491622815491.890014-CDS-P-fluviatile_contig12:241159..241549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 241160..241549 -
1693562052.6885688-CDS-P-fluviatile_contig12:241159..2415491693562052.6885688-CDS-P-fluviatile_contig12:241159..241549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 241160..241549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.9038885-UTR-P-fluviatile_contig12:241549..2416581622815491.9038885-UTR-P-fluviatile_contig12:241549..241658Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 241550..241658 -
1693562052.7044659-UTR-P-fluviatile_contig12:241549..2416581693562052.7044659-UTR-P-fluviatile_contig12:241549..241658Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 241550..241658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1333.1prot_P-fluviatile_contig12.1333.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 241160..241549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1333.1

>prot_P-fluviatile_contig12.1333.1 ID=prot_P-fluviatile_contig12.1333.1|Name=mRNA_P-fluviatile_contig12.1333.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
MPNTSFICADADLHIDGCVKDFYSHVFDESDIHHINHTSGGQKLHHRFAT
DGAFVKMIQDDLRDGKKIMVCCGSSKELRGLREIALEIVPESKIGIYYAD
SEKQKELIDVYKHWPAYSFIGFTSTITVSI
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mRNA from alignment at P-fluviatile_contig12:241160..241658-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1333.1 ID=mRNA_P-fluviatile_contig12.1333.1|Name=mRNA_P-fluviatile_contig12.1333.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=499bp|location=Sequence derived from alignment at P-fluviatile_contig12:241160..241658- (Porterinema fluviatile SAG_2381)
ATCATCATAATGGACGAGATCCGGTCGATGCTGACCTCGGCTGCGTGCTT
CGAAACGAACGGGCTCAACATCACGGCCAACATGGACAAGCTGAGGGACC
TGTGCGCGGATGCCGAACACGTCATTTATTTGTGCGGACGCAGACCTACA
TATTGATGGCTGTGTAAAGGACTTTTACAGCCACGTGTTCGATGAGTCCG
ACATTCACCACATTAATCACACGTCGGGGGGGCAGAAGCTGCACCACAGG
TTCGCTACCGACGGCGCGTTTGTGAAGATGATTCAGGACGACCTGAGAGA
CGGCAAGAAGATTATGGTGTGCTGTGGCTCATCCAAAGAGCTGAGGGGTC
TACGAGAAATTGCATTGGAGATAGTACCAGAGTCCAAGATCGGGATATAC
TACGCAGACTCGGAGAAGCAGAAAGAACTTATCGACGTGTACAAGCACTG
GCCAGCCTACAGCTTCATCGGGTTTACATCGACCATCACCGTCAGCATC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:241160..241658-

>mRNA_P-fluviatile_contig12.1333.1 ID=mRNA_P-fluviatile_contig12.1333.1|Name=mRNA_P-fluviatile_contig12.1333.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig12:241160..241658- (Porterinema fluviatile SAG_2381)
ATGCCGAACACGTCATTTATTTGTGCGGACGCAGACCTACATATTGATGG
CTGTGTAAAGGACTTTTACAGCCACGTGTTCGATGAGTCCGACATTCACC
ACATTAATCACACGTCGGGGGGGCAGAAGCTGCACCACAGGTTCGCTACC
GACGGCGCGTTTGTGAAGATGATTCAGGACGACCTGAGAGACGGCAAGAA
GATTATGGTGTGCTGTGGCTCATCCAAAGAGCTGAGGGGTCTACGAGAAA
TTGCATTGGAGATAGTACCAGAGTCCAAGATCGGGATATACTACGCAGAC
TCGGAGAAGCAGAAAGAACTTATCGACGTGTACAAGCACTGGCCAGCCTA
CAGCTTCATCGGGTTTACATCGACCATCACCGTCAGCATCATGCCGAACA
CGTCATTTATTTGTGCGGACGCAGACCTACATATTGATGGCTGTGTAAAG
GACTTTTACAGCCACGTGTTCGATGAGTCCGACATTCACCACATTAATCA
CACGTCGGGGGGGCAGAAGCTGCACCACAGGTTCGCTACCGACGGCGCGT
TTGTGAAGATGATTCAGGACGACCTGAGAGACGGCAAGAAGATTATGGTG
TGCTGTGGCTCATCCAAAGAGCTGAGGGGTCTACGAGAAATTGCATTGGA
GATAGTACCAGAGTCCAAGATCGGGATATACTACGCAGACTCGGAGAAGC
AGAAAGAACTTATCGACGTGTACAAGCACTGGCCAGCCTACAGCTTCATC
GGGTTTACATCGACCATCACCGTCAGCATC
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