mRNA_P-fluviatile_contig76.14123.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14123.1
Unique NamemRNA_P-fluviatile_contig76.14123.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5L519_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L519_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.000e-33
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 214
            VLG E+Q F AEV  SGSSQP PDPQL PKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQK+AHS
Sbjct:   82 VLGPEQQTFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHS 152
[Close]
BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5L5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G4_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.250e-31
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 214
            VLG E+QAF AEV  SGS QP PDPQL PKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQK+AHS
Sbjct:  414 VLGPEQQAFGAEVDASGSPQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHS 484
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BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5KW61_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW61_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.210e-31
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 214
            VLG E+QAF AEV  SGSSQP PDPQL PKRDDEPAVDKPVREAIGCLMWTKLTR DIA+P NKLQK+AHS
Sbjct:   65 VLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPAVDKPVREAIGCLMWTKLTRLDIAVPRNKLQKIAHS 135
[Close]
BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5L002_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L002_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.310e-29
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 214
            VLG+E+QAF  EV  SGSSQP PDPQL PKRDDEPAVD  VREAIGCLMWTKLTRPDIAL LNKLQ++ HS
Sbjct:   12 VLGQEQQAFGVEVDASGSSQPLPDPQLRPKRDDEPAVDTSVREAIGCLMWTKLTRPDIALSLNKLQQITHS 82
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BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.540e-29
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -3 
Query:    2 LGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 211
            LG E+QAF AEV  SGSSQP PDPQL P RDDEPAV+KPVREAIGCLMWTKLTRPDI LPLNKLQ++A+S
Sbjct:    5 LGPEQQAFGAEVDASGSSQPLPDPQLRPTRDDEPAVEKPVREAIGCLMWTKLTRPDITLPLNKLQEIAYS 74
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BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5LAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.830e-29
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 214
            VLG E+QAF AEV  SGSSQP PDPQL PKRDDE AVDKPVREAIGCLMWTKLTRPDIA+P NKLQK+AHS
Sbjct:  227 VLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDELAVDKPVREAIGCLMWTKLTRPDIAVPRNKLQKIAHS 297
[Close]
BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5KUU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU2_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 7.850e-29
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 214
            VL  ++QAF AEV  SG SQP PDPQL P RDDEPAVDKPVREAIGCLMWTKLTRP IALPLNKLQK+AH+
Sbjct:   12 VLDPQQQAFGAEVDASGFSQPLPDPQLRPTRDDEPAVDKPVREAIGCLMWTKLTRPAIALPLNKLQKIAHT 82
[Close]
BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5L5V1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.540e-28
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = -3 
Query:    2 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 214
            VLG E++ F AEV  SG SQ  PDPQL PK DD+PAVDKPVREAIGCLMWTKLTRPDIALPLNKL+K+AHS
Sbjct:  183 VLGPEQEVFGAEVDASGPSQSLPDPQLRPKIDDQPAVDKPVREAIGCLMWTKLTRPDIALPLNKLEKIAHS 253
[Close]
BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5JLR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.840e-27
Identity = 59/76 (77.63%), Postives = 60/76 (78.95%), Query Frame = -3 
Query:    2 QAFEAEVGGSGSSQPQPDPQLGPKRD-----------DEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAHS 196
            QAF AEV  SGSSQP PDPQL PKRD           DEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQK+AHS
Sbjct:  115 QAFGAEVDASGSSQPLPDPQLRPKRDMERACADHVLGDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHS 190
[Close]
BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Match: A0A6H5JNQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.250e-23
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = -3 
Query:    5 VLGEEEQAFEAEVGGSGSSQPQPDPQLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKVAH 214
            VLG E+QAF  EV     S      + GPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQK+AH
Sbjct:   64 VLGPEQQAFGVEVDXPNISNRCKHVRQGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAH 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L519_9PHAE2.000e-3387.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L5G4_9PHAE4.250e-3187.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW61_9PHAE9.210e-3184.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L002_9PHAE1.310e-2980.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFV7_9PHAE1.540e-2981.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAS2_9PHAE1.830e-2984.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU2_9PHAE7.850e-2980.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5V1_9PHAE4.540e-2878.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLR7_9PHAE2.840e-2777.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNQ6_9PHAE1.250e-2374.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:588759..589692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.642352-CDS-P-fluviatile_contig76:588758..5888941622817190.642352-CDS-P-fluviatile_contig76:588758..588894Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 588759..588894 +
1693571454.069078-CDS-P-fluviatile_contig76:588758..5888941693571454.069078-CDS-P-fluviatile_contig76:588758..588894Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 588759..588894 +
1622817190.6527548-CDS-P-fluviatile_contig76:589611..5896911622817190.6527548-CDS-P-fluviatile_contig76:589611..589691Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 589612..589691 +
1693571454.0772781-CDS-P-fluviatile_contig76:589611..5896911693571454.0772781-CDS-P-fluviatile_contig76:589611..589691Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 589612..589691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14123.1prot_P-fluviatile_contig76.14123.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 588759..589691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14123.1

>prot_P-fluviatile_contig76.14123.1 ID=prot_P-fluviatile_contig76.14123.1|Name=mRNA_P-fluviatile_contig76.14123.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=72bp
VSGRPSGAYSEAGRCLASSVSSTSGIRLPPSPVYPPRARHLSLALAAGLV
EVAKTRCRRPRPRMPAPPRPTP
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mRNA from alignment at P-fluviatile_contig76:588759..589692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14123.1 ID=mRNA_P-fluviatile_contig76.14123.1|Name=mRNA_P-fluviatile_contig76.14123.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=934bp|location=Sequence derived from alignment at P-fluviatile_contig76:588759..589692+ (Porterinema fluviatile SAG_2381)
GTGAGTGGGCGACCTTCTGGAGCTTATTCAGAGGCAGGGCGATGTCTGGC
CTCGTCAGTTTCGTCCACATCAGGCATCCGATTGCCTCCCTCACCGGTTT
ATCCACCGCGGGCTCGTCATCTCTCTTTGGCCCTAGGTCGGCATCGGTGG
CAGCAGGGGTGAAAGCGGTTGTGGTCACATCAAACCGCTTCAGCATGCTC
TCGATGTACGCTGTTTGCGAAAGCTTGGTGATGCCGTTCTCTACATCCAT
CTCAATCGCACACCCGTCATACCACGTGCATTCCCCCAAATCCTTCACCG
GGAACTTCTTGTTGAGTGTGTGTGTGTGTGTTGTCTTCACATTAAAACCC
TATTTCCGACCGCTCCTAGTACCTCCAACTGTCCGTACCCTATCTTGTCG
GGAAAACGATTCCGTGGTCACAGGCTATAGCGAGATGGTTTTGCCCCCTA
CCGTTTTGGGGTTCCACCCTACAAAGAAAATCGGTCCCAGATATCTATAG
CACCAACGAAGCAAAATACATGACAAGATCCAAGAAGGCAAGGCACCCAC
AATCGCTCCTCCTCTCGATTTTTACGTGGGCGCATCAGCGTCTTGTTGAG
GGATGCGAACAACTCCTTTCGCTCTCCCTCGTCTGCCGCCACCAAGATGT
CATCAACGTAGATCACAATCAGACCGCCCCTCGGGCAGCCCTTTGACCTT
CGTGAATGTCCCGACCTTGTTTTGACCATATATCTCTTTCTTGATGGCCG
CATCCCAGAAAACCTTGTACTTCGAACACGTCACATCCTTGTACGTCATC
GGTAACGCTTCCACATCACACGGTTTCTACCCGATTGGCGAGGGTATACT
TAGCTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCGACCTCGG
CCTCGAATGCCTGCTCCTCCTCGCCCAACACCTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:588759..589692+

>mRNA_P-fluviatile_contig76.14123.1 ID=mRNA_P-fluviatile_contig76.14123.1|Name=mRNA_P-fluviatile_contig76.14123.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=432bp|location=Sequence derived from alignment at P-fluviatile_contig76:588759..589692+ (Porterinema fluviatile SAG_2381)
GTGAGTGGGCGACCTTCTGGAGCTTATTCAGAGGCAGGGCGATGTCTGGC
CTCGTCAGTTTCGTCCACATCAGGCATCCGATTGCCTCCCTCACCGGTTT
ATCCACCGCGGGCTCGTCATCTCTCTTTGGCCCTAGGTGAGTGGGCGACC
TTCTGGAGCTTATTCAGAGGCAGGGCGATGTCTGGCCTCGTCAGTTTCGT
CCACATCAGGCATCCGATTGCCTCCCTCACCGGTTTATCCACCGCGGGCT
CGTCATCTCTCTTTGGCCCTAGCTGCGGGTCTGGTTGAGGTTGCGAAGAC
CCGCTGCCGCCGACCTCGGCCTCGAATGCCTGCTCCTCCTCGCCCAACAC
CTCTGCGGGTCTGGTTGAGGTTGCGAAGACCCGCTGCCGCCGACCTCGGC
CTCGAATGCCTGCTCCTCCTCGCCCAACACCT
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