mRNA_P-fluviatile_contig12.1325.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1325.1
Unique NamemRNA_P-fluviatile_contig12.1325.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1325.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.700e-22
Identity = 78/121 (64.46%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:    1 MTVLRTLSTVVEFVGETTINFISXXXXXXXXXXXXXXXXXXXXXXXXLNQFVSVWRLVVTLVTISLGETCFLAKTTMKRIADALKDVMLSLKAFSKGVPGMVTVLKAQSVDVKKNVDVKTI 363
            MT+LR+L++ V FVGETTIN   XXXXXXXXXXXXXXXXXXXXXXXX +Q VSVWRLVV ++T +LGETC+LA   + R+ D   D MLSL+AF  G+PG+  VLKAQ  DVK  V+V  I
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNVTNI 121
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BLAST of mRNA_P-fluviatile_contig12.1325.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 92.8 bits (229), Expect = 1.610e-20
Identity = 77/121 (63.64%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 MTVLRTLSTVVEFVGETTINFISXXXXXXXXXXXXXXXXXXXXXXXXLNQFVSVWRLVVTLVTISLGETCFLAKTTMKRIADALKDVMLSLKAFSKGVPGMVTVLKAQSVDVKKNVDVKTI 363
            MT+LR+L++ V F+GETTIN   XXXXXXXXXXXXXXXXXXXXXXXX  Q VSVWRLVVT++T +LGETC+LA   + R+ D   D +LSL+AFS G+PG+  VLKAQ+ DVK  V++ +I
Sbjct:   59 MTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSI 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP64_ECTSI9.700e-2264.46EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNN4_ESV1K1.610e-2063.64EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:74421..74783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815491.5014186-CDS-P-fluviatile_contig12:74420..747831622815491.5014186-CDS-P-fluviatile_contig12:74420..74783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 74421..74783 -
1693562052.18995-CDS-P-fluviatile_contig12:74420..747831693562052.18995-CDS-P-fluviatile_contig12:74420..74783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 74421..74783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1325.1prot_P-fluviatile_contig12.1325.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 74421..74783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1325.1

>prot_P-fluviatile_contig12.1325.1 ID=prot_P-fluviatile_contig12.1325.1|Name=mRNA_P-fluviatile_contig12.1325.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
MTVLRTLSTVVEFVGETTINFISFVRDTVFSVLTFVVQTITTTILFVLNQ
FVSVWRLVVTLVTISLGETCFLAKTTMKRIADALKDVMLSLKAFSKGVPG
MVTVLKAQSVDVKKNVDVKTI
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mRNA from alignment at P-fluviatile_contig12:74421..74783-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1325.1 ID=mRNA_P-fluviatile_contig12.1325.1|Name=mRNA_P-fluviatile_contig12.1325.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=363bp|location=Sequence derived from alignment at P-fluviatile_contig12:74421..74783- (Porterinema fluviatile SAG_2381)
ATGACCGTCCTACGAACTTTAAGCACCGTTGTCGAGTTCGTGGGGGAGAC
AACCATCAACTTTATCTCCTTCGTGAGAGATACAGTATTTTCCGTTCTCA
CGTTCGTGGTACAGACGATCACCACCACCATTTTATTCGTGCTGAATCAA
TTTGTCTCTGTCTGGAGGCTGGTGGTAACCCTCGTGACTATATCCCTCGG
CGAGACCTGTTTCTTGGCCAAGACAACAATGAAGCGCATAGCGGACGCCC
TGAAGGACGTGATGCTGAGCCTAAAGGCATTCTCCAAAGGAGTTCCCGGG
ATGGTCACCGTCCTGAAAGCTCAGTCGGTGGACGTAAAAAAGAACGTTGA
CGTAAAAACTATT
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:74421..74783-

>mRNA_P-fluviatile_contig12.1325.1 ID=mRNA_P-fluviatile_contig12.1325.1|Name=mRNA_P-fluviatile_contig12.1325.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig12:74421..74783- (Porterinema fluviatile SAG_2381)
ATGACCGTCCTACGAACTTTAAGCACCGTTGTCGAGTTCGTGGGGGAGAC
AACCATCAACTTTATCTCCTTCGTGAGAGATACAGTATTTTCCGTTCTCA
CGTTCGTGGTACAGACGATCACCACCACCATTTTATTCGTGCTGAATCAA
TTTGTCTCTGTCTGGAGGCTGGTGGTAACCCTCGTGACTATATCCCTCGG
CGAGACCTGTTTCTTGGCCAAGACAACAATGAAGCGCATAGCGGACGCCC
TGAAGGACGTGATGCTGAGCCTAAAGGCATTCTCCAAAGGAGTTCCCGGG
ATGGTCACCGTCCTGAAAGCTCAGTCGGTGGACGTAAAAAAGAACGTTGA
CGTAAAAACTATTATGACCGTCCTACGAACTTTAAGCACCGTTGTCGAGT
TCGTGGGGGAGACAACCATCAACTTTATCTCCTTCGTGAGAGATACAGTA
TTTTCCGTTCTCACGTTCGTGGTACAGACGATCACCACCACCATTTTATT
CGTGCTGAATCAATTTGTCTCTGTCTGGAGGCTGGTGGTAACCCTCGTGA
CTATATCCCTCGGCGAGACCTGTTTCTTGGCCAAGACAACAATGAAGCGC
ATAGCGGACGCCCTGAAGGACGTGATGCTGAGCCTAAAGGCATTCTCCAA
AGGAGTTCCCGGGATGGTCACCGTCCTGAAAGCTCAGTCGGTGGACGTAA
AAAAGAACGTTGACGTAAAAACTATT
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