mRNA_P-fluviatile_contig74.13979.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig74.13979.1
Unique NamemRNA_P-fluviatile_contig74.13979.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: D7FHU3_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU3_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.940e-61
Identity = 112/154 (72.73%), Postives = 128/154 (83.12%), Query Frame = 1 
Query:  289 SEEKIKELEESV----LKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEASPTLRVSEDKKQIGRAEPMTEEGDKERVARTVHTKGYNKDAKITIEDVEKLFAEAGKARYVKICKASKGTKL 738
            SE+K KE E +     LKM+EFYFGDSNFGWDRF+Q+KAGKMGE L+DISVL+TFNKLK +VK A LS E+G ALIAR+GEASP+LRVSEDKKQIGRA  MTEE  KER+ARTV TKGY K++ I IEDVEKLF++AGKA YVKICKA  G KL
Sbjct:   41 SEDKGKEAETAAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAG-GNKL 193
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: D7FZL9_ECTSI (XRRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL9_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.900e-43
Identity = 88/159 (55.35%), Postives = 120/159 (75.47%), Query Frame = 1 
Query:  745 IFVEFETKEQAEKAVELSDTLSHEGDVITVRLTKSFDQRSGEKSDKTPTPEEPVVYDAGKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLEGSKE-GGLELAPGVEQKGTVSLVDGAEEKAYYERLEQQRADKFSR 1218
            IFVEF+ KE AEKA+  S+   +EG+ I VR  +S ++R+   +   P   EP+VY+AGKI+H+  +PESGVSRESL++AV++FGT  YVDF+FG REA++RM N +EAAA + G+KE  GL LA  VE KGTVSLV+GAEEK YY+R+E+ RA++ +R
Sbjct:  109 IFVEFDKKEAAEKAIARSEDYFYEGEPIAVRPARSDEERAAAHTAPAP---EPLVYEAGKIIHIAGIPESGVSRESLKNAVESFGTALYVDFSFGGREAWIRMQNPAEAAATVSGAKETDGLTLAAEVEDKGTVSLVEGAEEKDYYDRMEKMRAERLNR 264
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: A0A482RX93_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX93_9ARCH)

HSP 1 Score: 114 bits (284), Expect = 1.010e-24
Identity = 107/346 (30.92%), Postives = 171/346 (49.42%), Query Frame = 1 
Query:  316 ESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEASPTLRVSEDKKQIGRAEPMTEEGDKERVARTVHTKGYNKD-AKITIEDVEKLFAEAGKARYVKIC----KASKGTKLTG-IFVEFETKEQAEKAVELSDTLSHEGDVITVRLTKSFDQRS---------------------------------GEKSDKTPTPEEPVVYDAGKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLEGSKEGGLELAPGVEQKGTVSLVDGAEEKAYYERLEQQ-RADKFSRSNNRG 1233
            +++ K VEFYF DSN+  D FL++ A    +  V ISVLLTFN+LK +  D        VA +A+  E+S  + +S +K ++ RAEP+ E    E  +RT++ KGY  D A +TIE + + ++  GK  YVK+     + +   K  G + VEF + E  +KAV  S     +G +I     K F Q S                                   + DK  T E    Y+ G ++ + DLP +    E L++ ++    VR+VD+T GA +A++R  +A  A  V E   +G ++     E +G   +++G  EKAY+ + +   +A + SR+NN+G
Sbjct:    6 DAIRKQVEFYFSDSNYRKDTFLKAAAESDPDGFVAISVLLTFNRLKNLTTD--------VAEVAKAVESSDAVVLSANKDKVKRAEPLPETD--ESASRTLYIKGYPVDNADVTIESIAEQWSPYGKVLYVKMRTFRDRDTNARKFKGSVCVEFASTEGVDKAVAAS---KEDGKIILGFEDKKFVQVSTFAEWYNSKKAYLESKKGKAQKRXXXXXXXXXXDNEGDKEETRE--FKYENGLVVKLTDLPATHNGVE-LKELLRQTADVRFVDYTNGASDAFVRCGDAGAARKVAEAVNKGEVKFG---EAEGKAEVLEGEGEKAYWVKNDADFKARRESRNNNKG 332
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: A0A1X7UCM2_AMPQE (Uncharacterized protein n=3 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UCM2_AMPQE)

HSP 1 Score: 114 bits (284), Expect = 2.890e-24
Identity = 91/353 (25.78%), Postives = 170/353 (48.16%), Query Frame = 1 
Query:  253 EKAGGEAAPAPLSEEKIKELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLS--------------NEDGVALIARLGEASPTLRVSEDKKQIGRAEPMTEEGDKERVARTVHTKGYNKDAKITIEDVEKLFAEAGKARYVKICKASKGTKLTGIFVEFETKEQAEKAVELSDTLSHEGDVITVRLTKS-FDQRSGEKSDK-------------TPTPEEP----VVYDAGKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLEGSKEGGL--ELAPGVEQKGTVSLVDGAEEKAYYERLEQQRADK 1209
            E  G +   A  S  +  +LE+ +++ +EFYFGD N   D+FLQ+K  +  +  V++SVLLTF++LK +  D  L               +EDG+ +  +  +  PTL +            ++ E  K+   RT++ KG+ KD+  T++D++      G+   +++ K         IFVE++  +   K +E    L ++ +++TV   +  F ++  E+ +K             T T ++      +   G ILH     + G +RE+L++  + F TV +VDF  G  E Y+R D    A    +G+       E+    +   T+ +++G EE AY+E++++ +A++
Sbjct:    3 ESTGDDVPSASTSSSEPDDLEKKIIRQIEFYFGDRNLSRDKFLQNKIKENEDGWVELSVLLTFSRLKALSTDCSLIAGALRKSTSGLLEVSEDGLKVKRKSSDPVPTLSL------------LSPEDRKDMSNRTLYMKGFPKDS--TLDDIQDFLLPFGETEMIRMKKDLDKQFKGSIFVEYKLVDSISKVLEKKAELKYKDELLTVETKQDYFKRKDAERKEKKAQSRVESSSGSATETSKDTNGTTFIRQEGAILHFTGCGD-GTTRETLKEYFRQFATVAWVDFQKGDTEGYIRFDEDGGAKKAYDGAMANVPTGEVCKICDSDVTLKVLEGEEESAYWEKMKEDQANR 340
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: A0A835Z2D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.340e-22
Identity = 85/275 (30.91%), Postives = 132/275 (48.00%), Query Frame = 1 
Query:  295 EKIKELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEASPTLRVSEDKKQIGRAEPMTEEGDKERVARTVHTKGYNKDAK-ITIEDVEKLFAEAGKARYVKICKASKGTKLTGIFVEFETKEQAEKAVELSDTLSHEGDVITVRLTKSFDQ----------RSGEKSDKTPTPEEPVVYDAGKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLE 1086
            E   EL   V + +EFYFGDSNF  D+FL+ +     + LV ++VL+TFNKLK+M  D         A++    + S  L VSED  ++GR +  TE     R  RT++ KG+  D   ++IE V  +F   G+  YV I +         + VEF+ +  A K +    TL + G  ++  L  S+++          R G+++       +P  ++ G    +  LP  GV    LRD+++ FG   YVD   G  E +LR     +A  V +
Sbjct:   86 EATPELLAKVQRQLEFYFGDSNFNRDKFLREQVKLSEDSLVPLTVLMTFNKLKSMTADE--------AVVLAAAKQSEVLSVSEDGLRVGRGDGATELRYDAR-PRTIYAKGFGYDCPDLSIEFVTDMFKVFGEVGYVYIRRTMDKKAKGSVLVEFKEEASALKCLINRGTLVYNGQRLSKVL--SYEEYLEDREKERARKGKRAGGADDQSQPPKFEPGSTFKITGLPAEGVDFAFLRDSIEPFGASPYVDTAKGLAEGHLRFRTTEDANKVYD 349
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: A0A6H5JNF3_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.370e-22
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:  301 IKELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEASPTLRVSEDKKQIG 564
            +KE E + LKM+EFYFGDSNFGWDRF+Q+KAGKMGEKL+DISVL+TFNKLK +VK A LS E+  AL++ +  A     VS    Q G
Sbjct:  222 VKEAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGEKLMDISVLMTFNKLKNIVKKADLSPEEAQALVSYVQTAPLHQEVSSSFGQAG 309
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: A0A3M7T006_BRAPC (Lupus La n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T006_BRAPC)

HSP 1 Score: 106 bits (265), Expect = 5.630e-22
Identity = 94/316 (29.75%), Postives = 159/316 (50.32%), Query Frame = 1 
Query:  307 ELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEASPTLRVSEDKKQIGRAEPMTE---EGDKERVARTVHTKGYNKDAKITIEDVEKLFAEAGKARYVKICKASKGTKLTG-IFVEFETKEQAEKAVELSDTLSHEGDVITVRLTKSFDQRSGEKSDKTPT------------------PEEPVVYD---AGKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLEGSKEGGLELAPGVEQKGTVSLVDGAEEKAYY 1179
            EL+E ++K +E+YFGD N   D FLQ +  K     V +  ++ FN+LK +  D        V + A     S  L + E+KK+I RA+P+ E   E +      TV+ KG+  D+++T++D+   F E GK  ++ + +     +  G +FV FET EQ  K ++L + + ++  VI+  L + + +R     +K                      EE  V +   AG ILHV +LP++  +RESL++    +  V+Y+DF  G  E Y+R    ++A  V E   E  L++   V +   + +++G EE+AY+
Sbjct:    6 ELDEKIIKQIEYYFGDINLSKDTFLQEETQK-DSGWVHLETMVKFNRLKQLATDFQ------VIVDALKKSKSNLLEIDEEKKKIRRAKPLPENLSEFETNIKQNTVYAKGF--DSQMTLDDLFSFFEEHGKILHIFMRRFPATKEFKGSVFVTFETNEQMRKFLDLEE-VKYKDTVISRELQEDYLKRKAPVLEKIKENKAXXXXXXXXXXXXXQEAEEAYVKEQQVAGAILHVKNLPDNA-TRESLKELFDIYAKVKYLDFNRGQSEGYVRFCEENKAKEVFEQVDE--LKMNDNVLE---IRVLEGEEEQAYW 305
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: A0A813UGS3_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813UGS3_9BILA)

HSP 1 Score: 103 bits (258), Expect = 6.100e-21
Identity = 96/323 (29.72%), Postives = 158/323 (48.92%), Query Frame = 1 
Query:  307 ELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEASPTLRVSEDKKQIGRAEPMTE---EGDKERVARTVHTKGYNKDAKITIEDVEKLFAEAGKA-----RYVKICKASKGTKLTGIFVEFETKEQAEKAVELSDTLSHEGDVITVRLTKSFDQRSG---EKSDKTPTPEEPVVYDA------------------GKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLEGSKEGGLELAPGVEQKGTVSLVDGAEEKAYYERL 1188
            ELEE ++K +E+YFGD N   D+FLQ +  K     V +  ++ FN+LK       LS +  V L A     S  L + E+ K+I RA+P+ E   E +      TV+ KG+  +  +T++++   F + GK      R +   K  KG+    +FV FET EQ +  ++L + + H+ +V+   L + + +R G   EK  +    +E                        G ILHV +LP S  +RESL++       V+YVDF  G  E ++R +  ++A  VLE  K G ++L   V +   + +++G EE+ Y+  +
Sbjct:    6 ELEEKIIKQIEYYFGDINLSKDKFLQEETQKESG-WVPLETMIKFNRLKQ------LSTDHQVILDALKKSTSELLEIDEENKKIRRAKPLPENLSEFETNLKQNTVYVKGFAPE--MTLDELYGFFEQHGKVLQIFMRRLPATKQFKGS----VFVTFETNEQMKAFMDLEE-VKHDDNVLQRELQEDYLKRKGPQFEKFKEAKAKKEAXXXXXXXXXXXXXXXYLKEQQVLGAILHVKNLP-SDATRESLKELFDNHAKVKYVDFNKGQIEGFVRFNEENQAKQVLE--KAGEIKLKDSVLE---LRVLEGEEEQNYWREI 308
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: UPI00077FD00B (lupus La protein homolog n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FD00B)

HSP 1 Score: 102 bits (253), Expect = 3.310e-20
Identity = 93/347 (26.80%), Postives = 170/347 (48.99%), Query Frame = 1 
Query:  262 GGEAAPAPLSEEKIKELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEA-SPTLRVSEDKKQIGRAEPMTEEGDK-ERVARTVHTKGYNKDAKITIEDVEKLFAEAGKARYVKICKASKGTKLT---GIFVEFETKEQAEKAVELSDTLSHEGDVI----------------TVRLTKSFDQRSGEKSDKTPTPEEPVVYDAGKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLEGSKEGGLELAPGVEQKGTVSLVDGAEEKAYYERLEQQRADKFSRSN-NRGR 1236
            G E  P P ++EK  ELE+ V++ +E+YFG+ N G D+FL+ +  K  +  V +  ++ F +LK M       N D   + A L ++ +  + VS+D  +I R  P+ E  D+ E   R+++ KG+ ++   T++ V   F +  K   V + K  +G K      +F  FET+   +   E       + +++                 +R  K+  + +GEK DK  TP+       G +L ++ + +  + R+ +R A++ +G V +VDF  G  +A +R      +  + +  +E G++       K T+SL+DG EE  Y+E+++     K ++ N N+GR
Sbjct:    2 GTEVIPVPENQEKPSELEQKVIRQIEYYFGNYNLGRDKFLKEEL-KKDDGWVPLETMVRFQRLKQM-------NVDFETISAALKKSPNQLMEVSDDCTKIRRRAPVPENVDRGEMDDRSLYVKGFKRET--TLDQVLDFFKDY-KVENVMMRKRRQGDKFFFKGSVFATFETQADCDSFFEKKGIKFDKTEMLKERKKDYVKRKDEFFENLRAEKAKKKEAGEK-DKEDTPK-------GCLLKIIGITDESIKRDDVRKAMEEYGNVAFVDFFAGNTDAVIRFKEGIVSELLSKLEEEDGVKKLQIGSVKATLSLIDGEEETKYWEKIKSFSKQKGNQKNFNKGR 329
[Close]
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Match: UPI000719D8C8 (lupus La protein-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D8C8)

HSP 1 Score: 95.9 bits (237), Expect = 6.400e-18
Identity = 99/345 (28.70%), Postives = 177/345 (51.30%), Query Frame = 1 
Query:  295 EKIKELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKLKTMVKDAGLSNEDGVALIARLGEASPTL-RVSEDKKQIGR--AEPMTEEGDKERV---ARTVHTKGYNKDAKITIEDVEKLFAEAGKARYVKICKASKGTKLTGIFVEFETKEQAEKAVELSDTLSHEGDVITVRLTKSFDQRSGEKSD---------KTPTPEEPVVYDA---GKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLRMDNASEAAAVLEG---SKEGGLELAPGVEQKGTVSLVDGAEEKAYYERLEQQRADKFSRSNNRGRG----GRGGK 1254
            E+  ELE+ +++ +E+YFGDSN   DRFLQ +  K+ +  + +  ++ FN+LK + +D  L         + + +A   L  VSED  +I R  ++P+ E  ++ R    AR ++ KG+  D  ++++DV     + G    V + +  +      IF  FETKE A+  +E ++  + E +++ +     F++++ EKS          K P  +   + D    G ILH+        +RE +++ +   GTV +VDF+ G  EA++R     +A  VLE    + EG L +    E +G  S+++G EE  +++++  ++A+   R   RGRG    GRGG+
Sbjct:   18 EEPTELEQKIIRQIEYYFGDSNLSRDRFLQEQI-KLDDGWIPLDTMVKFNRLKAISEDISL-------YASAMKKAKRQLVEVSEDCLKIRRFPSKPLPENTEERRADIKARNIYAKGFPLD--MSLDDVVVFLEKYGPVESVAMRRTIERKFKGSIFALFETKEAAKSFLECTEKFN-ENELLRLSKEGYFNKKNAEKSKMKTKPAGDKKEPDNDFSGIQDKIEFGMILHLTGFAAES-TREHIKELLTPHGTVAWVDFSKGDSEAWVRFTGDHKAQEVLEKVTTAGEGKL-IVNDSELQG--SVLEGDEETTHWKQILAKQAEGRDRKRQRGRGRRDQGRGGR 347
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig74.13979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHU3_ECTSI1.940e-6172.73HTH La-type RNA-binding domain-containing protein ... [more]
D7FZL9_ECTSI1.900e-4355.35XRRM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A482RX93_9ARCH1.010e-2430.92Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A1X7UCM2_AMPQE2.890e-2425.78Uncharacterized protein n=3 Tax=Amphimedon queensl... [more]
A0A835Z2D4_9STRA1.340e-2230.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JNF3_9PHAE2.370e-2261.36HTH La-type RNA-binding domain-containing protein ... [more]
A0A3M7T006_BRAPC5.630e-2229.75Lupus La n=1 Tax=Brachionus plicatilis TaxID=10195... [more]
A0A813UGS3_9BILA6.100e-2129.72Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
UPI00077FD00B3.310e-2026.80lupus La protein homolog n=1 Tax=Parasteatoda tepi... [more]
UPI000719D8C86.400e-1828.70lupus La protein-like n=1 Tax=Priapulus caudatus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig74contigP-fluviatile_contig74:424939..435545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue5.1e-51
Seed eggNOG ortholog2880.D7FHU3
KEGG koko:K11090,ko:K14837,ko:K15191
KEGG Pathwayko05322,map05322
GOsGO:0000049,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006353,GO:0006383,GO:0006386,GO:0006396,GO:0006399,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008033,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0018130,GO:0019438,GO:0031123,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0033036,GO:0033592,GO:0034337,GO:0034414,GO:0034470,GO:0034471,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042779,GO:0042780,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0061818,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:0097159,GO:0097617,GO:0097659,GO:0099116,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1905267
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03021
Hectar predicted targeting categoryother localisation
Exons12
Model size1268
Cds size1266
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig74.13979.1prot_P-fluviatile_contig74.13979.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig74 424940..435545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817180.591185-CDS-P-fluviatile_contig74:424939..4250261622817180.591185-CDS-P-fluviatile_contig74:424939..425026Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 424940..425026 -
1693571404.3443656-CDS-P-fluviatile_contig74:424939..4250261693571404.3443656-CDS-P-fluviatile_contig74:424939..425026Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 424940..425026 -
1622817180.6011724-CDS-P-fluviatile_contig74:425961..4260911622817180.6011724-CDS-P-fluviatile_contig74:425961..426091Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 425962..426091 -
1693571404.3615842-CDS-P-fluviatile_contig74:425961..4260911693571404.3615842-CDS-P-fluviatile_contig74:425961..426091Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 425962..426091 -
1622817180.6106281-CDS-P-fluviatile_contig74:427497..4276131622817180.6106281-CDS-P-fluviatile_contig74:427497..427613Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 427498..427613 -
1693571404.3713527-CDS-P-fluviatile_contig74:427497..4276131693571404.3713527-CDS-P-fluviatile_contig74:427497..427613Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 427498..427613 -
1622817180.61996-CDS-P-fluviatile_contig74:428196..4282371622817180.61996-CDS-P-fluviatile_contig74:428196..428237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 428197..428237 -
1693571404.3841195-CDS-P-fluviatile_contig74:428196..4282371693571404.3841195-CDS-P-fluviatile_contig74:428196..428237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 428197..428237 -
1622817180.629263-CDS-P-fluviatile_contig74:429556..4296171622817180.629263-CDS-P-fluviatile_contig74:429556..429617Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 429557..429617 -
1693571404.395477-CDS-P-fluviatile_contig74:429556..4296171693571404.395477-CDS-P-fluviatile_contig74:429556..429617Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 429557..429617 -
1622817180.6385517-CDS-P-fluviatile_contig74:430140..4302321622817180.6385517-CDS-P-fluviatile_contig74:430140..430232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 430141..430232 -
1693571404.4061232-CDS-P-fluviatile_contig74:430140..4302321693571404.4061232-CDS-P-fluviatile_contig74:430140..430232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 430141..430232 -
1622817180.6477182-CDS-P-fluviatile_contig74:431018..4311361622817180.6477182-CDS-P-fluviatile_contig74:431018..431136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 431019..431136 -
1693571404.4166842-CDS-P-fluviatile_contig74:431018..4311361693571404.4166842-CDS-P-fluviatile_contig74:431018..431136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 431019..431136 -
1622817180.6569428-CDS-P-fluviatile_contig74:431518..4316381622817180.6569428-CDS-P-fluviatile_contig74:431518..431638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 431519..431638 -
1693571404.4266624-CDS-P-fluviatile_contig74:431518..4316381693571404.4266624-CDS-P-fluviatile_contig74:431518..431638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 431519..431638 -
1622817180.6707957-CDS-P-fluviatile_contig74:432700..4328111622817180.6707957-CDS-P-fluviatile_contig74:432700..432811Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 432701..432811 -
1693571404.4368827-CDS-P-fluviatile_contig74:432700..4328111693571404.4368827-CDS-P-fluviatile_contig74:432700..432811Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 432701..432811 -
1622817180.6839292-CDS-P-fluviatile_contig74:433323..4335181622817180.6839292-CDS-P-fluviatile_contig74:433323..433518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 433324..433518 -
1693571404.4547837-CDS-P-fluviatile_contig74:433323..4335181693571404.4547837-CDS-P-fluviatile_contig74:433323..433518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 433324..433518 -
1622817180.6977024-CDS-P-fluviatile_contig74:434027..4341441622817180.6977024-CDS-P-fluviatile_contig74:434027..434144Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 434028..434144 -
1693571404.4675026-CDS-P-fluviatile_contig74:434027..4341441693571404.4675026-CDS-P-fluviatile_contig74:434027..434144Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 434028..434144 -
1622817180.7118518-CDS-P-fluviatile_contig74:435467..4355451622817180.7118518-CDS-P-fluviatile_contig74:435467..435545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 435468..435545 -
1693571404.4779892-CDS-P-fluviatile_contig74:435467..4355451693571404.4779892-CDS-P-fluviatile_contig74:435467..435545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig74 435468..435545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig74.13979.1

>prot_P-fluviatile_contig74.13979.1 ID=prot_P-fluviatile_contig74.13979.1|Name=mRNA_P-fluviatile_contig74.13979.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=422bp
PEDNGAAAPAAGAGSDVAEPAVKKLKATDGDATTAEPAPDAATTAAVVAV
APAAAAAAVLAETSAATVPSATEDTKDEAKPVKEEKAGGEAAPAPLSEEK
IKELEESVLKMVEFYFGDSNFGWDRFLQSKAGKMGEKLVDISVLLTFNKL
KTMVKDAGLSNEDGVALIARLGEASPTLRVSEDKKQIGRAEPMTEEGDKE
RVARTVHTKGYNKDAKITIEDVEKLFAEAGKARYVKICKASKGTKLTGIF
VEFETKEQAEKAVELSDTLSHEGDVITVRLTKSFDQRSGEKSDKTPTPEE
PVVYDAGKILHVVDLPESGVSRESLRDAVKAFGTVRYVDFTFGAREAYLR
MDNASEAAAVLEGSKEGGLELAPGVEQKGTVSLVDGAEEKAYYERLEQQR
ADKFSRSNNRGRGGRGGKRGRG
back to top

mRNA from alignment at P-fluviatile_contig74:424939..435545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig74.13979.1 ID=mRNA_P-fluviatile_contig74.13979.1|Name=mRNA_P-fluviatile_contig74.13979.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=10607bp|location=Sequence derived from alignment at P-fluviatile_contig74:424939..435545- (Porterinema fluviatile SAG_2381)
CCAGAGGATAATGGGGCGGCGGCACCGGCCGCTGGAGCGGGCTCGGACGT
CGCAGAGCCTGCTGTCAAGAAGTTAAAGGTGAGATTGAACCCGTATATCG
GACAGACGAGCGGCGTTGGCCTCTTATGACACGGAGGTTGAACCCTGAAG
TTTATTACGGAGTAAATGACAAGATCCCAGCAGTACAGCAGATAGGACAG
CTGGAGTGGTATCACCTGCAGCTCGCGGGGACCCGCATGATGTGCGCAAT
TAGTCAATGCTGTTTCTGGATGGGCAGCGCGGGCATTGTGGAGCAATTCG
CGGACTGTTAAGCAACAGAATGTGTACCGGGCACCGGTGGTTGACACATT
TTTTTGTCCGCCGGGGGTTCCCTCACTCCCGAACCGAAACAGCAAGGGTG
GGCACGAAGGTCACGACAGCGACGCTTAGAATCGACAAGAGTTGATCACA
GCAGGACAGGCCGAGAAAACGAAAGTCAGACTTGTCTATGGGTGCTTGCT
TTTGGCTTTGGTAGTACGAGAAACAGTGTCAACGTGAACCGGTGCGTGGT
CAGTTGGGGTGCAACAGGAGCGCTGGTGATCGTTCCACTCTCTGAAAGCG
GGTCTAGTTTTAGCGAGGAATTGTAGCAAGATTCCTCTCTGTAGAGGCGT
TTTGTGTAAGGGAAAGTTATTGGCGACAAAAGGCACGACGACTCTTCTCA
CGGAGCCTCCTCCCGCTTTTGCTGTCAAAAAATGGTGGCTGCCCTCGAGG
CATTCCCGTTTTCAAGCGCCGGATGTTCGTCTCGGTGTCGGAATGCCTCT
CGCACACAAACCAGGACGTGTTTTCCCTGCTTAGGTCATGGCGCACGACT
TTCGTCCAACATCATGCCGTGCCCAACGCAGAAATACGCCTGTGGCACGT
AGTGAAGTGGGCGTAGCTCGAGCTGGGAATACATCGCTGGCGCGGAGACA
TGCTGATGACTGCGAGGAGTTTTGCCCCAAATTCAACCGGCAGGATAACG
TCGTTAGCACCAACATCCTCTTGCCCGTACACTCTTGACATACACAAAAT
ATTGACATTAAGGACGCCGCCATCAGTGCCACCCACGAGTCACGGATGAT
GACCGCCTAGCGCACATGCCTGGTACTACTGTAGTGTTTTCTTCGGCATG
CATTTTGCAACGACAAGACGCGGTGGCATACATAGCGGCATAGGCACCAC
GCCACGGGTGTGATTTTCCTGCGCACATTCCCACCGATGGTCCTATTTTA
CCCTGTTTTCTTGATCCTCTGCGGCGATGTGCTTGCGGTGCGGTGCTCCG
TTATTGGCTTGCCCGGCTCGATGCACGGCCGATCGCACCGTCATTGCTTC
TCCGTGGCGGCCCCTCAAACTGATTCAATCACTTCCCTCATTTTATTGTA
GGCTACTGACGGGGACGCCACCACCGCCGAGCCGGCGCCGGACGCAGCTA
CCACGGCTGCGGTCGTCGCCGTTGCTCCTGCCGCGGCCGCCGCTGCCGTG
CTCGCCGAGACTTCCGCGGTGCGCAGACGACAACGGGAACAGATGATTTT
GTTTCCTTTTTCTGCTGTCCCAAGTCCACGTCTTGTCAGTCCTTGCACAG
CGAATGCCCGCCCGTGTTGTGTCTAGTGTGTACTTCATGGACGCTTCTTG
TCGTCGTCTCTGTCCGCACGCCCCTCATTCACCAGCGCAACGAGATCTCT
CGGCCTATCGTCTCGGTTACGGAGAGCATTCGCGAAAGGGAGGCAGTTTT
TCTCTTCTTTCTTTTCCACAGAGCCTGACTGTATCGCACCAGTCAGGCAG
CCTGCCTGCCACGCCGGTGTTGAAGAGCTCGCGCGAATGAAGCTATTCTG
GAGCTGTATTTCTTCCAACATCACTCTCTGCGCGCCTCGGACGCGCAGGT
ATGGCACACGCGCGGCACGTAGATCTGTCCCGAAACACACCTGGAAGTTT
TTGCTCAAACTTGATGCATCTTTGGCACGTGTGTTCGCTCTTGTATTTGG
CTCCGAATGCATATCCTCGTTGAACAGGCTACCGTCCCCTCAGCTACGGA
GGATACCAAAGATGAAGCCAAGCCTGTAAAGGAGGAGAAGGCGGGGGGGG
AGGCAGCACCCGCCCCCCTTTCTGAGGAAAAGATAAAGGAGCTTGAGGAA
TCGGTCCTCAAGATGGTCGAATTCTACTTTGGGGACTCCAACTTCGGCTG
GGATCGCTTCCTGCAGAGCAAGGTGAGGAACCGGCAAGGTATCGGACTGT
TACCAGCACCGATGTGAAGCGGTAGTTGAAACGTCAAGGGGCAATGCGTA
GTGCTGGTACTGCCCGCGGCACGGTGAGCTAGTCGATACGCACATCCCGC
CAAAGTGGGGTGATGGCATCAGCATCGGCGCATCAGCACCGACACGGTAC
CCTACCGGACCGGACAAGTTGTCTGCGTGCTGGTCGGCATGACGCGCAGC
GCTTGCACTGAGCGGCAGTTGACGTATCCCTTCTGTGTTCATATCTCTCC
GTTTTTGCTGTAATCCAGCGGTGGACATGGGCTGTCAGCTGCTGGCGCTG
GGCCGCTGTTTTTGACATGTGTTGTATTATTATTTATTGTTGAACTTTTA
CCTTTCCCACCCGCTCGATTTCTCCCCAATGTTTTTGGCTCAAGCAGCAA
ACACGCTTTATCCTTGACCCCCTTAGACGGCGCTTCCTTTTTCACGTTCC
GTCACGTTTGGTGTCATCATCACTCTCCGCTCAGGCGGGGAAGATGGGCG
AGAAGCTCGTGGACATCTCAGTGCTCTTGACGTTCAACAAGCTCAAGACT
ATGGTCAAGGACGCCGGGCTTAGCAACGAGGACGGCGTCGCGCTGGTGAA
GCCTCTCTCTCTCTCTCTCTCGCGCGCGCGTGCCAGCCTGTAGCTCCCTT
TCTCGGTAGCTGTCGCTGATCTTCTCTCTCTCGTTGCCTCTGTCTATCTG
TATGCTCTTTCGGCCCTATTCCCCGCGCCCGCTGGTAGCCCCCCGCCTCT
TCCGAATATGTCTGACCGATGTGTCATATTCCAACACATGATCGTCGACA
TGGATTCTTCACTGCAACATGCACTCCAAAAAAGCGAGGGATTCCAACAT
TAACCCACGAGCAACCCACCGTGTGCCATCAGCAATAAGCGTCACCTGTG
ACAGCAGCGCCTTAGCTTCCCGTTTCCTTCTCCCATACCGGGTCCAGGCC
GGTGGATAGCGCCTTGCGCGTGTGTAAACAGTGGGAAAGAGGTGGACGAA
ACTCTCCTCGCAATAAAAACTATTAGTCAGCACCGCAGGAGGAAGGGGCT
GGGGGCCTCAGGGGGAGACACTTTCTGTGCGACCACGGTTCAGATTTTAA
GGCAAGATGCCCCGGTGGCAAGGCGCCCTTCAAACTCCGGAAATAAATGT
GTGTGTGTGGGGGGGTCGGCAGGACAGACATTACTGACGACGAAATGCTC
CACGTCCCATACTCCGTCGCAGATCATGGAGCAGGGGATATGGCCTTCAG
TAGGGTGTGTAGTCTACTTCTCGAACACTACCGTGCGCGTGCACCAGCAC
ATGCCTTAAATTTGAATGAAATGAATGGCGCCACCTCCTGCTTTACGGCG
TCGCTATCCTGCATGTCTCATCCAACACGCCCATCAAGCAGGCCTCTTGT
TCAAAGTGGCACGCAAAAAATAAAACCGCAACGTAGTTTCCCGTAAATTT
TGCCCGCCGATTCCCGACGAAAATGCTCTGTGTGACCCATGTACCTCTCT
GTCATTGTGCCTCTGTTTGACCTCTGCATCTCACTGTTATCTGAGTGCCT
CCCGTGTGTTGCGCCAACCGAGAAAGACGACGAACACCGAAAAACTAATC
CCGTTGGTTCGCTGCCGACCTTACCGTGTCATCGGCATCGATTTTGATAC
ATCCAAGATCGCGCGATTGGGAGAGGCATCTCCCACGCTCCGCGTGAGCG
AGGACAAGAAGCAGATCGGACGCGCGGAGCCGATGACGGAGGAGGGCGAC
AAAGAGCGAGTCGCTCGCACGGTGCATGTACGTCAAGGGCGGTGCAGCAT
CCCGGGATACGGTAGACGATCGGAGGATGGGGTGCGGGACGGCACGGAAA
GCGTGGTGTGGTACACGTGTTGGCCTTGTTGTCTTGGACGCGTACGCGGC
GCACCCTGAGAGGGGAAGAGCGCATCGCGTTCACGGTACGGCATGACTTT
GTTTCCGGCACGGCACAAGCAAGACCGTTTTTTGGTACCATCGAGATCAT
GCCACTCAGCGCTGCTGCGTTGATGGCGGGTGGGGGCGCCTCTGCAGCTG
AATCAAGTTGATAGCTTTTGTCAGCCCACTTTCCCTCCCTCCGCTGACTC
TTGCGTTCATGATCGGTACGCACCCAAACGGAACAACGTCGAATCTAATA
CGATTGCAGACGAAGGGATACAACAAGGACGCGAAGATCACCATCGAAGA
CGTGGAAAAGTTGTTCGCCGAGGCGGGGAAGGCGCGGTACGTGAAGATCT
GCAAGGCCAGCAAGGGCACCAAACTAAGTGAGCGCCATTCATAAGCTGTA
GGAGCTCGCTGTACCATGCTAACGTAGGGCGGGACCCCTTACAGCAGCCG
CAGCTTGTCGCAGCACTAGCCAGCGTCAGCTGCTGGCTTAGCCTTACGGC
CGCTGTTGATGGCGAGGTGGCAGCTGTCTGAGCAGGATGACCGCTGTTGA
TGGCGGAATGGCAGCTGCCTTAGCCTTGTGAACGCTATTTTAGCCTTGTA
GACGTTGTTGACGGCGGAGGGGCGCCCCTGCGGTAGTCTCAAAGTTGATA
TTTTTTTCAAGTAGTGCCCCTACGTAGCACAGCACAGGGCAGCAACACCG
TAGCACAGCACAGGGCAGCAACACCGCAGCACAGCACAGGGCAGCAACAC
CGCAGCACAGCACAGGGCAGCAACACCGCAGCAACGATACTCTCGAGACC
ATTGTTGCACATCCACGGACCTTGTGTATTTATTAGATAGACTGGGTGCC
ATTATGGAGTAGCCTCATAAAGACCGGATTATCGATCGTGGCGCCATTTC
GCCAGTGGCGTGGCTGCGCTGGTCGTGTGGCGGCTACTGCCGCCGTCGTA
AGTGGTATGTTATCCACCAGGGAATTGCCCTTTCCCCAAGACTGTGCAGG
TGTATCGATGTCAGCTCCTCCTCCCAAGCACAAGAGCACGTCAAACTCCC
TCCTGAGTTGTTGTGTCAACTCTCACAATTATTGTGAGCTCGTGTGGCGG
CTCGGCTGTTTGTTTTCTGTTGTTGTTACGTTGCTTTTGTCCACGTCTTT
GCTGCGATCGAAGCGGGGATCTTCGTTGAGTTCGAGACCAAGGAGCAAGC
CGAGAAGGCGGTGGAGCTATCGGACACGTTGTCGCACGAGGGAGATGTCA
TTACGGTGAGATTCGTGGCAAGAGAGTCGAATGTCGTTGCCATCGTTGGG
GTGGTTTTGATTTTCGTCGTTTTGTTGCGCTTCCCGTTTTTGTCGCTTTC
CAAAATGGCTTTATTGCAGCCGTCGTCGTAATGTTGATGTTTTGAGTGTT
GATGTGTGTTGTGCCGATGATGACGTTATCGTGTTCATGTGTCTTTTCGA
GTTGCTCTCATCCACTGCCGTGCCTTACGTCAAAGTTTTTCCTGCCATTC
TGGCGCCGAAGGTGCCCCTGATTCCTTTTTCCGCCTCCCAAGATGTCGTG
GTCCAGTCTGTGTGGGTGTGTTCCCGCCGCACGTCAGTCGCAGACTAATG
CACACCACGCACAAGCCGTCAAACCGTCAAGCCAAGCAGGGCATGAGTGA
ACGGCATTGTTCTTTTGTCCGTGGGGGTTCGCTGTGAGAGTAAAAACGAC
AAGACGTTCGTCGCGACGTCTGATCTTGGTTTTCTTGACGATGCGCCCTT
TTCATGTGGTATGGTGTCATGTTAACAGGTGCGACTGACGAAGAGCTTCG
ACCAGCGATCTGGCGAGAAGAGTGACAAAACCCCGACACGTGAGTGCACT
CAGGCACAAGCCCACGCGGAGCACTCGTGACGCGAAGAACGTATGATTGT
CGCGGAACAGATTGGTGCGGCAGTGTCACAGGCAGCTAGCCTCGCTGTTT
GAAGATGCAGCACCTCAATCACCAACAGCAATGGCATGCCCCCTTTCATT
TGAGGAGCATGGTTGGCTCACCCGTGACCGAGAGAGCGTGACAAAGAAAG
GAGTACAATTGTTGACAGAGCGACGATATCGCCAGGGAAATGGTACGGAG
GCCGCGTAGCTTGAGGACCAAGCAGTGGAAGGATAATTAAAACGGCAAGT
CTCGACCGCACACAAAGGGGCTTCTCATTTGAGAGGCTTCCGTGCACAAT
CAGTACGTCAGCGTACGTTCGAGAGGCACCGTAGTTCGGTCGGGACGGGC
AACAAGCAACATTAGTGAGGTAATCGCTCAATGGAATCGGGTTCTAGCAT
ACAAGCGAAAGCCGCTGTGCTTCGCAAATCGGCCCGAGGCCCACCCGGGG
CCGTCCGTTGGTGGGATGAATACCAGGCGCGAAGATGCCCCCTGTGCCCA
CAGTGTGGGGGTGGGAGGATTTCACCATGTTCCGCTGCAATCTCTTGGTC
GAGTGTTTGAGTGCTCAGTGTCATGGAGTATGGCAAACTTGATCAAAACT
CCACCGCGGATCCTCGCTGGTCCACACCGGCTTAGCGCTGCTACTGCACA
GCAGTTTCGGTGCTCAGAGGACGTGCAACAGGTGCTGTTGAACTGACGCT
TTTTCGGCGTGCCTGCCAGCTAAGGACGTGTCATCTTCCTGAGCGCGAGG
GCAATGTTGTTGTTGTCCGTGGTCGAGAGATAACTCAACAACGCGCGTCC
TGTGTCTGCTCTGTTTCTCGGTTGCCATTGCTCTCGCAAGCCCACGAACG
TGCGTCGATTGTCCGTACCCTTGCCCGGTAACCGGAAAATTTTTGTCTAA
ATCTTGCGCGGAATATTTTTTTATTTGTGTGTGATGCATTTTCATTTCTC
ACGGATTGCTTTCACGAAAACGTCGCCGAAGCGAAACACTCAGGCTTGTA
CTCCGCAGGTAATTTCATTGCTGATTCAGGTACGCCCACTTTGGTTCCAC
CCTAATTTTAACATATAATCTCTCCACACCATCCAAAAAGCAGTCCATCG
CCTACGGGGTACACGCCCAAAAAGCTGATGCCATGTGATGCGGTTTCTGC
TTTGCTTGCGCTCTCCTCTCTTTCTCTGTATGTCGCCATTTTTCGTCGGA
ATTTTCGGCACCTTTGTCGCCCACCCTGCAATCGAATGGTGGGTGGTGGT
CCAACCAGCGGAGGAGCCGGTGGTATATGATGCGGGAAAGATCCTCCACG
TGAGTAAGCTAACGTTTGGCGTACGTGAAATTACATGAAGTGCGTTTATG
GGTTTTTGCAAATGCGCTTAGGGGGGGTTCGAGAAAGGGCAGGAGTATGT
AAATGTTGTCGGTACGCGCCGAGAGAGTTAAAAACGATTTCGCGGGGAGC
CTTCTGCCTCCGTAACGCTGGCGGCATCCTCGCTGAGGGTCATCGTGTTA
CTCCTCTTGGCACACACCGTCCTGCTAGGCATGGTCCACCACGCATACAT
AATGTCGCGATGAATGGTGCATTCCGTTCGCCCATTGATGCGGCAAATTG
CACAGTCCGGTAATCCATCACGGGAAATGTAATCCTTTCCATCAATAGAT
TCTTCCGAAAAAACACCTTTGCTCAAGCTTATCAAGTACTAGCGAGGTAC
ACAAAGATCGAGACAGTCCGCTAAACAATGGCAGAAGGTGTCATACATGA
ATACCGCCGCCGTTGCACGATCTGAACGCACAAACGCATGAAGGAAGAAA
TTACTGGTCCGTCCAGCTTGTGTCCCGACAAGCTGCCTTTGTACGCCACG
AATGAACGACACAACACGGACGAATGCATCAGGTCGTGGACCTCCCCGAG
TCCGGAGTTTCCCGCGAGAGCTTGAGGGACGCGGTCAAGGCCTTCGGCAC
CGTTCGCTACGTAGACTTCACCTTCGGCGCTCGCGAGGCCTATCTCAGGT
AAATGTTACCACCACTCGTAGTCAGTCGGTCGATCTCACGTCTCCCCCTG
CAGATATCGCGCTCGCGTTTCTTCCTTTATTCTGTAGTGCTTCAGTCAGT
GAGGCGATCGGGATCAGTCGCGTCCCACCCACCTGCTTGGTACCACAATC
GAGTGCTGACGTGCAGAATGGCATGGTTCTTATGCGTTTTCTGCAGTTTG
CTGCTTGCCTTTACCCTCATTCGACGGTGAATGGGACGACTTGTGCTCGC
CACGCTTGACCTGTGACGGAGGTCTGCCCTCCTCCCTGTCCTTACCTTGC
TGGTTCGATCTCATTTTGCGTGCTGAAACGCAGCTCGGGTGTGTGTGTGG
ACTTGAGCTATTTTCAGTTTGCTGTGGCTAGGGGAGCGCAGGAAGACACG
TGCGAATACATGCTCACGTCGAAACGACGATTTACGTCACGTCTGCTCGA
GTTGTCGACGGATTTGCTGTTGTGTACGGTGGGGGTCCCAATTTAGCGGC
TCCCTGACGAGTGACGTGCCGTATTTAGAGACCCCTAAATCTCGTGGCGC
CCCCGCATATCGGTTAGTAATGCCTACTGTGGTTTGGGGACGTGCCCTGA
CTAGCGACCACATTTCGTCCTGACACTAGGAGACGCTAAAGATGGACCTC
CACGGTACAGATTTCGAAACGAAGGTGTCTTTCACGCACACGCGCAACCG
CGACGTTTTTTCTTTTTGGATCTCTTGTCAGACGTAGCTGTCGTTCTGCT
TACTCTCTGGTTCTTGCCGCTGTGGTCCCGCGAATCATGGACGCTGCCAT
TTCAACGAGATGGATTTGTAACGCCCAGTCTATTCTCGGCAGAGGGGAAA
AGATATTCGTGCTTGCGCACATCTTCTTGCGAGATACAATTGTGGCTACG
ATTTAGGAGAAAGTTAGACAAGCAGTGCGGGTCTCCATTGAATCGTGACT
TTTCTTAAATCGAAGTGGTGAGTCATTGACTTCAAGGGTCCGTGACAAGC
CGATTTGACCCTCTGAAATGGGCTCTCCCATGAAAACACAATCTCAAACC
GCAGTCACTAAGACATTTATGCGGTGGACAAATAAAGCCCAGTCTTGGCT
GCACGGATGAGGAAAATTACTCGTCGTGCTTGTGCCCATATCTTCCAACG
AGATACTTCGAAGATGAATAAAGCCGAGTAATTTCTTCGTGGAGGAGAGA
GTGCACTCGCCTTCCAATTCTAGCATTCTTATAACAGCTCGCTTGTTACG
GGTTTGTGTCCTGAAACCAAATGCTGATTTCGCCCGGAAGAGAGAAATTT
CGCTGTCGAGCTCAGGTTGCCCTTGCTTTTCCCCTTTTCTTGCGACATGT
TACCTTGTCTTTATGTGCTTATTACTTGTCTCGCGCATCATGTCCGCGGA
GCAGAATGGACAACGCCTCGGAAGCGGCGGCTGTTTTGGAGGGAAGCAAG
GAGGGCGGCCTGGAGCTGGCGCCGGGGGTGGAGCAGAAGGGGACTGTCTC
GCTCGTGGACGGAGCCGAGGAGAAGGCCTACTACGTGAGTCGCTCGCTCG
GTAACTCAGTCAGTCAGTCAGTCGGTCCGGAGTTCCTTCGACCCTCGTGA
CAAGCGCTGAGACGCTCCAGTTGTCTTGTCTTGTTTTGTTTACTTTGTAT
TCCAAGCGGATGTATTGGAGGTTGGCGTTTCTTGTTCAATCCCCGGTCGA
CTGACGAGAGTCTGTTCTGTTTGAGAGCTGCCGCTGCTGTCTCGTCCGGA
AACATGTTATCACATTTCCACCGCCATCTTTTGTGTGCGTTTGCCTGCCC
GCCATCACGCCCACACGCCCCGCGCCAGACCTCAGTTCTTACTCGTGTTT
CTCGTTGTCTTGTGCCCAAATGACGACACCACAGATGTTTGATCGCCCGG
TTCCAAGCGTTTGGACATTGTTCTCTGGATTGTTTTTTGCTCCTCGTGCC
TGTTGTCTTCGGTCGAACGCGATTGTGACGTCGTGGACGACCAATATTCC
AACTGGTAGCTCCATTCAAAGCGGTCGGAATGAACGTCCGGCGTCAAGGG
GGGCGTTATCTCACGCTTGTGATACAGAACGCGCTCCCACGTAAGAACTT
GCCACTCGAGAGCGAAAGCATCCAAGAGTTTGTTGAGCCTCATGGAAGGG
GGCCCCGTCGTGGTGCTTATGGACAAGCGCCCCTTGCCCTCACCCAACAT
GGTGTTACTCCGTGTTGGTGCATGATTTCCGTTTTTGATTTTGAACGCAC
TCAGAAACAAACAAGTCAGGCCTTGCTTAAGTAACACATGAGATTCTTGG
GTGGTGTCTTGTTCTTCAAGACGCCACGACCAACCGTACTACGTCCTTCG
TCGACCCAAAAGAAAAAAGATAATTCGTGCTTGCGGCAACCGCTGTCGTT
AGGCGGGCGGTTGGGTTCTGAGTTTTTCATTCCGTGCGCGTAATTTTTCC
TCGACCTCGACCTCACTAGGAGCGCTTGGAGCAGCAAAGGGCCGACAAGT
TCAGTCGCAGCAACAACAGGGGGCGCGGTGGCCGTGGTGGAAAGCGAGGG
CGGGGGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig74:424939..435545-

>mRNA_P-fluviatile_contig74.13979.1 ID=mRNA_P-fluviatile_contig74.13979.1|Name=mRNA_P-fluviatile_contig74.13979.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2532bp|location=Sequence derived from alignment at P-fluviatile_contig74:424939..435545- (Porterinema fluviatile SAG_2381)
CCAGAGGATAATGGGGCGGCGGCACCGGCCGCTGGAGCGGGCTCGGACGT
CGCAGAGCCTGCTGTCAAGAAGTTAAAGCCAGAGGATAATGGGGCGGCGG
CACCGGCCGCTGGAGCGGGCTCGGACGTCGCAGAGCCTGCTGTCAAGAAG
TTAAAGGCTACTGACGGGGACGCCACCACCGCCGAGCCGGCGCCGGACGC
AGCTACCACGGCTGCGGTCGTCGCCGTTGCTCCTGCCGCGGCCGCCGCTG
CCGTGCTCGCCGAGACTTCCGCGGCTACTGACGGGGACGCCACCACCGCC
GAGCCGGCGCCGGACGCAGCTACCACGGCTGCGGTCGTCGCCGTTGCTCC
TGCCGCGGCCGCCGCTGCCGTGCTCGCCGAGACTTCCGCGGCTACCGTCC
CCTCAGCTACGGAGGATACCAAAGATGAAGCCAAGCCTGTAAAGGAGGAG
AAGGCGGGGGGGGAGGCAGCACCCGCCCCCCTTTCTGAGGAAAAGATAAA
GGAGCTTGAGGAATCGGTCCTCAAGATGGTCGAATTCTACTTTGGGGACT
CCAACTTCGGCTGGGATCGCTTCCTGCAGAGCAAGGCTACCGTCCCCTCA
GCTACGGAGGATACCAAAGATGAAGCCAAGCCTGTAAAGGAGGAGAAGGC
GGGGGGGGAGGCAGCACCCGCCCCCCTTTCTGAGGAAAAGATAAAGGAGC
TTGAGGAATCGGTCCTCAAGATGGTCGAATTCTACTTTGGGGACTCCAAC
TTCGGCTGGGATCGCTTCCTGCAGAGCAAGGCGGGGAAGATGGGCGAGAA
GCTCGTGGACATCTCAGTGCTCTTGACGTTCAACAAGCTCAAGACTATGG
TCAAGGACGCCGGGCTTAGCAACGAGGACGGCGTCGCGCTGGCGGGGAAG
ATGGGCGAGAAGCTCGTGGACATCTCAGTGCTCTTGACGTTCAACAAGCT
CAAGACTATGGTCAAGGACGCCGGGCTTAGCAACGAGGACGGCGTCGCGC
TGATCGCGCGATTGGGAGAGGCATCTCCCACGCTCCGCGTGAGCGAGGAC
AAGAAGCAGATCGGACGCGCGGAGCCGATGACGGAGGAGGGCGACAAAGA
GCGAGTCGCTCGCACGGTGCATATCGCGCGATTGGGAGAGGCATCTCCCA
CGCTCCGCGTGAGCGAGGACAAGAAGCAGATCGGACGCGCGGAGCCGATG
ACGGAGGAGGGCGACAAAGAGCGAGTCGCTCGCACGGTGCATACGAAGGG
ATACAACAAGGACGCGAAGATCACCATCGAAGACGTGGAAAAGTTGTTCG
CCGAGGCGGGGAAGGCGCGGTACGTGAAGATCTGCAAGGCCAGCAAGGGC
ACCAAACTAAACGAAGGGATACAACAAGGACGCGAAGATCACCATCGAAG
ACGTGGAAAAGTTGTTCGCCGAGGCGGGGAAGGCGCGGTACGTGAAGATC
TGCAAGGCCAGCAAGGGCACCAAACTAACGGGGATCTTCGTTGAGTTCGA
GACCAAGGAGCAAGCCGAGAAGGCGGTGGAGCTATCGGACACGTTGTCGC
ACGAGGGAGATGTCATTACGCGGGGATCTTCGTTGAGTTCGAGACCAAGG
AGCAAGCCGAGAAGGCGGTGGAGCTATCGGACACGTTGTCGCACGAGGGA
GATGTCATTACGGTGCGACTGACGAAGAGCTTCGACCAGCGATCTGGCGA
GAAGAGTGACAAAACCCCGACACGTGCGACTGACGAAGAGCTTCGACCAG
CGATCTGGCGAGAAGAGTGACAAAACCCCGACACCGGAGGAGCCGGTGGT
ATATGATGCGGGAAAGATCCTCCACCGGAGGAGCCGGTGGTATATGATGC
GGGAAAGATCCTCCACGTCGTGGACCTCCCCGAGTCCGGAGTTTCCCGCG
AGAGCTTGAGGGACGCGGTCAAGGCCTTCGGCACCGTTCGCTACGTAGAC
TTCACCTTCGGCGCTCGCGAGGCCTATCTCAGGTCGTGGACCTCCCCGAG
TCCGGAGTTTCCCGCGAGAGCTTGAGGGACGCGGTCAAGGCCTTCGGCAC
CGTTCGCTACGTAGACTTCACCTTCGGCGCTCGCGAGGCCTATCTCAGAA
TGGACAACGCCTCGGAAGCGGCGGCTGTTTTGGAGGGAAGCAAGGAGGGC
GGCCTGGAGCTGGCGCCGGGGGTGGAGCAGAAGGGGACTGTCTCGCTCGT
GGACGGAGCCGAGGAGAAGGCCTACTACAATGGACAACGCCTCGGAAGCG
GCGGCTGTTTTGGAGGGAAGCAAGGAGGGCGGCCTGGAGCTGGCGCCGGG
GGTGGAGCAGAAGGGGACTGTCTCGCTCGTGGACGGAGCCGAGGAGAAGG
CCTACTACGAGCGCTTGGAGCAGCAAAGGGCCGACAAGTTCAGTCGCAGC
AACAACAGGGGGCGCGGTGGCCGTGGTGGAAAGCGAGGGCGGGGGGAGCG
CTTGGAGCAGCAAAGGGCCGACAAGTTCAGTCGCAGCAACAACAGGGGGC
GCGGTGGCCGTGGTGGAAAGCGAGGGCGGGGG
back to top