mRNA_P-fluviatile_contig72.13858.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13858.1
Unique NamemRNA_P-fluviatile_contig72.13858.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig72.13858.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 6.970e-70
Identity = 132/178 (74.16%), Postives = 153/178 (85.96%), Query Frame = 2 
Query:  383 TNKKGTRAKKEKSMLGKAGDALKTMFNAFMAASTLVSLALAVEAIWQLHGTQLTLSNAVPTLTKLIPLTGLGVFGAAQLVGLIARVVRVIVTLPIMLSGTWVLLQNAPKLLPQGSDLTRAGSLAAVLATPEVLEAAAVVALLGGTAIWSFNFATGAVGALLLQGKSREDEDGEDEDAL 916
            T  +G   +  KS+L KAG+ALK  FNAFMAASTL SLALA EA+WQLHG  LTLSNAVPTLTKL+PLTG+GVFGAAQLVGL+ARVVRVIVTLP+M+SGTWV+LQNAPKL P+G DLT AGSLAA+LATPEVLEAAAV+ALLGGTAIW+ NFATGAVGAL + G+S+   + E+ED +
Sbjct:  174 TKNRGRGKEGGKSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGAL-MPGQSKSSREEEEEDGV 350
[Close]
BLAST of mRNA_P-fluviatile_contig72.13858.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.420e-38
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 2 
Query:  383 TNKKGTRAKKEKSMLGKAGDALKTMFNAFMAASTLVSLALAVEAIWQLHGTQLTLSNAVPTLTKLIPLTGLGVFGAAQLVGLIARVVRVIVTLPIMLSGTWVLLQNAPK 709
            T  KG   +  K +L KAG+ALK  FNAFMAASTL SL LA EA+WQLHG  LTLSNAVPTLTKL+PLTG+GVFGAAQLVGL+ARVVRVIVTLP+M+SGTWV+LQNAPK
Sbjct:  175 TKNKGGGEEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283
[Close]
BLAST of mRNA_P-fluviatile_contig72.13858.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.440e-19
Identity = 63/156 (40.38%), Postives = 94/156 (60.26%), Query Frame = 2 
Query:  437 GDALKTMFNAFMAASTLVSLALAVEAIWQLHGTQLTLSNAVPTLTKLIPLTGLGVFGAAQLVGLIARVVRVIVTLPIMLSGTWVLLQNAPKLLPQGSDLTRAGSLAAVLATPEVLEAAAVVALLGGTAIWSFNFATGAV-GALLLQGKSREDEDGE 901
            G+ +++ +N  + A T+ S+ LAV+A+ +L    +TL     TL  L+PL   GV GAA+LV ++ R+VRV+VT+P++L G ++   + P LL    DL   G L AVLATPEVLEA A++A++ G  IW      G V G   ++G   +D D E
Sbjct:   27 GEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLAT-GGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDDSDDE 177
[Close]
BLAST of mRNA_P-fluviatile_contig72.13858.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-9
Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 2 
Query:  440 DALKTMFNAFMAASTLVSLALAVEAIWQLHGTQLTLSNAVPTLTKLIPLTGLGVFGAAQLVGLIARVVRVIVTLPIMLSGTWVLLQNAPKLLPQGSDLTRAGSLAAVLATPEVLEAAAVVALLGGTAIW 826
            D+ K  F   +    + S+  A  A+++L+    TLSN   T+T ++P    G FG  +L+G   R+VR+++++PI++ GTW L    P+ +    DL    SL  + A PE++EA  ++  +G    W
Sbjct:  128 DSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFW 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE6.970e-7074.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI3.420e-3876.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM52_9STRA6.440e-1940.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA1.140e-931.01Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:288600..291090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002870.1
Exons2
Model size1998
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13858.1prot_P-fluviatile_contig72.13858.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 289021..290011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817164.3582897-UTR-P-fluviatile_contig72:288599..2890201622817164.3582897-UTR-P-fluviatile_contig72:288599..289020Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 288600..289020 +
1693571337.725986-UTR-P-fluviatile_contig72:288599..2890201693571337.725986-UTR-P-fluviatile_contig72:288599..289020Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 288600..289020 +
1622817164.3902867-UTR-P-fluviatile_contig72:290011..2910901622817164.3902867-UTR-P-fluviatile_contig72:290011..291090Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 290012..291090 +
1693571337.763381-UTR-P-fluviatile_contig72:290011..2910901693571337.763381-UTR-P-fluviatile_contig72:290011..291090Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 290012..291090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817164.3690188-CDS-P-fluviatile_contig72:289020..2893081622817164.3690188-CDS-P-fluviatile_contig72:289020..289308Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 289021..289308 +
1693571337.739519-CDS-P-fluviatile_contig72:289020..2893081693571337.739519-CDS-P-fluviatile_contig72:289020..289308Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 289021..289308 +
1622817164.3782227-CDS-P-fluviatile_contig72:289801..2900111622817164.3782227-CDS-P-fluviatile_contig72:289801..290011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 289802..290011 +
1693571337.7519398-CDS-P-fluviatile_contig72:289801..2900111693571337.7519398-CDS-P-fluviatile_contig72:289801..290011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 289802..290011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13858.1

>prot_P-fluviatile_contig72.13858.1 ID=prot_P-fluviatile_contig72.13858.1|Name=mRNA_P-fluviatile_contig72.13858.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=166bp
MLGKAGDALKTMFNAFMAASTLVSLALAVEAIWQLHGTQLTLSNAVPTLT
KLIPLTGLGVFGAAQLVGLIARVVRVIVTLPIMLSGTWVLLQNAPKLLPQ
GSDLTRAGSLAAVLATPEVLEAAAVVALLGGTAIWSFNFATGAVGALLLQ
GKSREDEDGEDEDAL*
back to top

mRNA from alignment at P-fluviatile_contig72:288600..291090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13858.1 ID=mRNA_P-fluviatile_contig72.13858.1|Name=mRNA_P-fluviatile_contig72.13858.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2491bp|location=Sequence derived from alignment at P-fluviatile_contig72:288600..291090+ (Porterinema fluviatile SAG_2381)
GCCGCCGTCGCGACCTCCGCCGCGACCGTACCCGTTGGCCGCCGTTCGGC
GGCCGAGAGCGTTGAAATCATCGGCCTCGCTGAGAAATCCGGGCTGTGCG
TGCCGTTCGACGAGCAGCCTCGATGGCCGCGAACATCGGAGGCACCCGCA
TCTACGCTGTCCAAAGTTCGACGAATCCGTTGCCCGGGGATCGCAACAGA
GATCGTTGCCCTCGTCCTCGCCGTCCTGGTCGTTGTCTGCGGGCAGGGCG
GACAGTAGCGGGACCAGTACCAGAGCCTCGAAGTCATCGCCGGGAGATGT
GGAAGCGCCAGACGAGGTGGATGTGGGGAGGGCTGGAGTTTCTGGTGCCG
TCGGCGGGAAGGGGGCAAGCGGCGCGGTAAAAACGAACAAGAAGGGGACG
AGGGCCAAGAAGGAGAAGTCCATGCTGGGGAAAGCCGGGGACGCGTTGAA
GACCATGTTCAACGCCTTCATGGCGGCGAGCACCCTCGTCTCCCTCGCCC
TGGCGGTGGAGGCCATCTGGCAGCTGCACGGCACGCAGCTCACGCTCTCG
AATGCAGTCCCTACGCTCACCAAGCTCATCCCGCTCACCGGCCTCGGGGT
TTTCGGTGCGGCACAGCTGGTGGGCCTCATCGCGAGGGTCGTCAGAGTCA
TCGTGACGCTCCCGATCATGCTCAGCGGCACGTGGGTCTTACTGCAGAAT
GCTCCAAAGGTGAGCGCGGTCGGTGGCCGGTGGCCGCTCGTGCCGCTCGT
TGATTGTGTAGGCGGGGAGTTCCCCGCGCCTCGAAACACCCCGCGCCAAT
GACGTCAATCCTACCTCCTATGTTGCCCCCTTTTCCTGATTTGTTGCTGC
GGAGGGATAATTTTGGTGCGGCTCGATTTTTGTGCTGTTGGGCGCGCGAG
GAGACGCTCGCATTGCGTATTGTGAAAGTCACTCCCAAAGACCCTGCCGC
GACATCCTTCTTCCTCGAAACATCACCGAACGAAAAATTCCACAAACTAA
GTGATACGGCCTAAAACAACGCGGCCTTCACTTCAATCTGATTCATTCGA
CGGCTCTGCTTTATCAATGCACCAAAAGCTTGTCCGCCGAGAGAAGTCTC
CGTGTGGGTACTTCGTCACACCCCGTCCTTTTTTTACCGTTTTTGCCGCT
TTTTGCTGCTCATTGTGGTTTTTTGTTTGGGATGCTGCACCACCTACGAT
AGCTTTTGCCGCAAGGTTCGGACCTGACGAGAGCAGGGTCGCTAGCAGCG
GTGCTGGCCACTCCGGAGGTGCTGGAGGCAGCCGCCGTCGTGGCGCTTCT
GGGGGGCACCGCGATATGGTCCTTCAACTTTGCGACGGGGGCGGTGGGAG
CGTTGCTGCTGCAGGGGAAAAGCAGAGAGGACGAAGATGGCGAAGACGAG
GACGCGCTTTAGATTAGGAGCTGGGATTTTCCAGGGGTTGTTGCTCTTGC
CTTTGTCAAATCTGGTCTCCGGAAAGAGACGAGCGATCGGCCGCTGTGCA
TTTTGTTCGGGAAAAATCCCGAGTTGTTGCTTAAAAGATACAGTAGGTGT
GGATATTGTGCGACAACAGCAGCATACTGCCCGGATGGTGCTTGCATACT
GCCCGGATGGTGCTTGCGGGCAATGTTTGACCTCGTTTTTGTTCCGACAC
CGGCTGGGCGTGAGCTTCACCGTTTCTTGTATTTTGCTGCTGACGCTTGC
ATTTGATGTTTTTTCGTAGCCGCTGCTATATCCGTGGTTCTCTAGCTCTC
TGTTGTCACCTCTGCTCTGCTCATGTAATCCTGAGAAATGCACCGGCATA
TCCCCGCCCTTGCCGTGTCATGGGAACGCCAAAACGTTGCACAGAATGTA
GGTCTTCGATACTGCTTTACCATAAACCCAGGTTAGAGCCCTGTACTTGG
GGTTGTTGCTGTTGAGCAGGCCGCGGCGCTGTTGGCAAGAAACTACGAAA
GGTTTCAGCAGTAGAGCTCTGAATATTCGCCAGTAGTATGAATATCATGC
ACGTTTTCCAGCAATGTTTTAGCGGGAAGATCGACACCAAGTGCGGGACG
TATCTCGGTTTGCTGAAGAGATTTGGTCATTTGTCGACGAGTGTGCGCTG
GTCCTTGAAGCACCCTTGCCAAGCCGGTGGCCTCAATAAGTAATGGCGAC
CACGGAAACCGAGGAGGTAGGCGTGCGACATATGCGACACAAAAGCAGGT
GGCGGAAAACGCCAAGCAGAAAACAGCGCGTGCACGAGTTCGGCCGTATC
AAAATTAATCGCGCTTTTATCCTTGCTTTCAGGAGCTTGCGGACTCGTCG
TTGGCTGAGAGAATTATGCTTGTTTGAAAGTCCTCCCGCAGACTTGAGAG
TAGGGCTGTAGAGGCTGACATGCAATGCCGTCACAATCTACCGCTACGAC
ACATGTAGCGTACGATCGCGTGGAAAAGGTGAAACCCACAAAACCATGGA
GGTCTCGACGGTGATGGCACGGGGTGAAAGGCGACTTCGGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig72:288600..291090+

>mRNA_P-fluviatile_contig72.13858.1 ID=mRNA_P-fluviatile_contig72.13858.1|Name=mRNA_P-fluviatile_contig72.13858.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=996bp|location=Sequence derived from alignment at P-fluviatile_contig72:288600..291090+ (Porterinema fluviatile SAG_2381)
ATGCTGGGGAAAGCCGGGGACGCGTTGAAGACCATGTTCAACGCCTTCAT
GGCGGCGAGCACCCTCGTCTCCCTCGCCCTGGCGGTGGAGGCCATCTGGC
AGCTGCACGGCACGCAGCTCACGCTCTCGAATGCAGTCCCTACGCTCACC
AAGCTCATCCCGCTCACCGGCCTCGGGGTTTTCGGTGCGGCACAGCTGGT
GGGCCTCATCGCGAGGGTCGTCAGAGTCATCGTGACGCTCCCGATCATGC
TCAGCGGCACGTGGGTCTTACTGCAGAATGCTCCAAAGATGCTGGGGAAA
GCCGGGGACGCGTTGAAGACCATGTTCAACGCCTTCATGGCGGCGAGCAC
CCTCGTCTCCCTCGCCCTGGCGGTGGAGGCCATCTGGCAGCTGCACGGCA
CGCAGCTCACGCTCTCGAATGCAGTCCCTACGCTCACCAAGCTCATCCCG
CTCACCGGCCTCGGGGTTTTCGGTGCGGCACAGCTGGTGGGCCTCATCGC
GAGGGTCGTCAGAGTCATCGTGACGCTCCCGATCATGCTCAGCGGCACGT
GGGTCTTACTGCAGAATGCTCCAAAGCTTTTGCCGCAAGGTTCGGACCTG
ACGAGAGCAGGGTCGCTAGCAGCGGTGCTGGCCACTCCGGAGGTGCTGGA
GGCAGCCGCCGTCGTGGCGCTTCTGGGGGGCACCGCGATATGGTCCTTCA
ACTTTGCGACGGGGGCGGTGGGAGCGTTGCTGCTGCAGGGGAAAAGCAGA
GAGGACGAAGATGGCGAAGACGAGGACGCGCTTTAGCTTTTGCCGCAAGG
TTCGGACCTGACGAGAGCAGGGTCGCTAGCAGCGGTGCTGGCCACTCCGG
AGGTGCTGGAGGCAGCCGCCGTCGTGGCGCTTCTGGGGGGCACCGCGATA
TGGTCCTTCAACTTTGCGACGGGGGCGGTGGGAGCGTTGCTGCTGCAGGG
GAAAAGCAGAGAGGACGAAGATGGCGAAGACGAGGACGCGCTTTAG
back to top