mRNA_P-fluviatile_contig71.13823.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig71.13823.1
Unique NamemRNA_P-fluviatile_contig71.13823.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig71.13823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig71contigP-fluviatile_contig71:502506..503393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size888
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig71.13823.1prot_P-fluviatile_contig71.13823.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig71 502750..503325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817155.4061346-UTR-P-fluviatile_contig71:502505..5027491622817155.4061346-UTR-P-fluviatile_contig71:502505..502749Porterinema fluviatile SAG_2381UTRP-fluviatile_contig71 502506..502749 +
1693571298.344214-UTR-P-fluviatile_contig71:502505..5027491693571298.344214-UTR-P-fluviatile_contig71:502505..502749Porterinema fluviatile SAG_2381UTRP-fluviatile_contig71 502506..502749 +
1622817155.427762-UTR-P-fluviatile_contig71:503325..5033931622817155.427762-UTR-P-fluviatile_contig71:503325..503393Porterinema fluviatile SAG_2381UTRP-fluviatile_contig71 503326..503393 +
1693571298.3610446-UTR-P-fluviatile_contig71:503325..5033931693571298.3610446-UTR-P-fluviatile_contig71:503325..503393Porterinema fluviatile SAG_2381UTRP-fluviatile_contig71 503326..503393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817155.418488-CDS-P-fluviatile_contig71:502749..5033251622817155.418488-CDS-P-fluviatile_contig71:502749..503325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig71 502750..503325 +
1693571298.3522868-CDS-P-fluviatile_contig71:502749..5033251693571298.3522868-CDS-P-fluviatile_contig71:502749..503325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig71 502750..503325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig71.13823.1

>prot_P-fluviatile_contig71.13823.1 ID=prot_P-fluviatile_contig71.13823.1|Name=mRNA_P-fluviatile_contig71.13823.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=192bp
MIFGACVLNGMRGHSEPRLLRTRIHLVMPGTNHESYHTYPGDHQPTEEAR
KTWVMVILRNDVHVRVEVLSFWWVSVACSVPLFLFSVSNHEIIETRSFDL
YFKLDYSGCGPLDSCLYLHWSGFDRLFDVSFDPLFLQLHAQISMEEHSRG
AGEFPHQQRYFSVHPSKVVQHPQDPTICIWHMADLCFIVPA*
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mRNA from alignment at P-fluviatile_contig71:502506..503393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig71.13823.1 ID=mRNA_P-fluviatile_contig71.13823.1|Name=mRNA_P-fluviatile_contig71.13823.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=888bp|location=Sequence derived from alignment at P-fluviatile_contig71:502506..503393+ (Porterinema fluviatile SAG_2381)
GCACACCAGGTCAGGACGGTTGCTACGGTACCTTCTTGTAGTATTTTAGT
GTTGTCTTACCTATTTTTCACATTCTCGCTCTGCGTCACACCAGATCGGA
GCGGTTGCTTCTGCCCAGGAAGTTCCCGCCGACGAGGAATGCATTCACCC
CCCAGGCGAATGCTGTAATCGATGGATACGTTCTTGCCGGCAACCATAGC
AACAACACACAGCACCAACAAACACGCACAAGTGCTAGGTTTCGATGATC
TTTGGGGCCTGCGTTTTGAATGGAATGCGCGGCCATTCGGAGCCTCGACT
GCTTCGAACTCGCATACATCTTGTGATGCCTGGAACCAACCACGAATCTT
ATCACACCTATCCCGGCGATCACCAGCCAACGGAGGAAGCAAGAAAGACT
TGGGTGATGGTGATTCTGAGAAACGACGTACACGTACGTGTTGAAGTGCT
GTCTTTCTGGTGGGTGTCTGTTGCTTGTTCTGTGCCCTTGTTCCTTTTTT
CCGTTTCAAACCACGAGATAATTGAGACGCGGTCATTTGATTTGTATTTT
AAATTGGATTATTCAGGATGCGGCCCTCTTGATTCGTGTTTGTACCTTCA
TTGGTCAGGGTTCGACCGTTTGTTTGACGTCAGCTTCGACCCCTTGTTTT
TGCAATTGCATGCGCAAATATCCATGGAGGAACACTCACGGGGGGCGGGG
GAATTCCCTCATCAACAGAGATACTTTTCAGTACACCCGTCCAAGGTTGT
ACAACACCCACAGGATCCAACGATATGTATATGGCATATGGCAGATCTGT
GCTTCATAGTACCAGCATAGCAGCACCACTCTAGGGATAAACGGTTTGGT
CATCTTACGTTTAGCAGGATGCGAGTGGAGGCACCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig71:502506..503393+

>mRNA_P-fluviatile_contig71.13823.1 ID=mRNA_P-fluviatile_contig71.13823.1|Name=mRNA_P-fluviatile_contig71.13823.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1152bp|location=Sequence derived from alignment at P-fluviatile_contig71:502506..503393+ (Porterinema fluviatile SAG_2381)
ATGATCTTTGGGGCCTGCGTTTTGAATGGAATGCGCGGCCATTCGGAGCC
TCGACTGCTTCGAACTCGCATACATCTTGTGATGCCTGGAACCAACCACG
AATCTTATCACACCTATCCCGGCGATCACCAGCCAACGGAGGAAGCAAGA
AAGACTTGGGTGATGGTGATTCTGAGAAACGACGTACACGTACGTGTTGA
AGTGCTGTCTTTCTGGTGGGTGTCTGTTGCTTGTTCTGTGCCCTTGTTCC
TTTTTTCCGTTTCAAACCACGAGATAATTGAGACGCGGTCATTTGATTTG
TATTTTAAATTGGATTATTCAGGATGCGGCCCTCTTGATTCGTGTTTGTA
CCTTCATTGGTCAGGGTTCGACCGTTTGTTTGACGTCAGCTTCGACCCCT
TGTTTTTGCAATTGCATGCGCAAATATCCATGGAGGAACACTCACGGGGG
GCGGGGGAATTCCCTCATCAACAGAGATACTTTTCAGTACACCCGTCCAA
GGTTGTACAACACCCACAGGATCCAACGATATGTATATGGCATATGGCAG
ATCTGTGCTTCATAGTACCAGCATAGATGATCTTTGGGGCCTGCGTTTTG
AATGGAATGCGCGGCCATTCGGAGCCTCGACTGCTTCGAACTCGCATACA
TCTTGTGATGCCTGGAACCAACCACGAATCTTATCACACCTATCCCGGCG
ATCACCAGCCAACGGAGGAAGCAAGAAAGACTTGGGTGATGGTGATTCTG
AGAAACGACGTACACGTACGTGTTGAAGTGCTGTCTTTCTGGTGGGTGTC
TGTTGCTTGTTCTGTGCCCTTGTTCCTTTTTTCCGTTTCAAACCACGAGA
TAATTGAGACGCGGTCATTTGATTTGTATTTTAAATTGGATTATTCAGGA
TGCGGCCCTCTTGATTCGTGTTTGTACCTTCATTGGTCAGGGTTCGACCG
TTTGTTTGACGTCAGCTTCGACCCCTTGTTTTTGCAATTGCATGCGCAAA
TATCCATGGAGGAACACTCACGGGGGGCGGGGGAATTCCCTCATCAACAG
AGATACTTTTCAGTACACCCGTCCAAGGTTGTACAACACCCACAGGATCC
AACGATATGTATATGGCATATGGCAGATCTGTGCTTCATAGTACCAGCAT
AG
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