mRNA_P-fluviatile_contig12.1422.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1422.1
Unique NamemRNA_P-fluviatile_contig12.1422.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5JE34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE34_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.760e-48
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSRRSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRKE ETDRP LQDVPIAVSNDRLEELLGE AVRKLLGEGHTLTGLRVS VFLGDYLPS+RSKKPPTRANLGIPEGGLLTCDGWLAE
Sbjct:  217 PKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGGLLTCDGWLAE 304
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BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 5.180e-48
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSRRSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRKE ETDRP LQDVPIAVSNDRLEELLGE AVRKLLGEGHTLTGLRVS VFLGDYLPS+RSKKPPTRANLGIPEGGLLTCDGWLAE
Sbjct:  318 PKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGGLLTCDGWLAE 405
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BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5J9Z8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z8_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.160e-47
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSRRSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRKE ETDRP LQDVPIAVSNDRLEELLGE AVRKLLGEGHTLTGLRVS VFLGDYLPS+RSKKPPTRANLGIPEGGL  CDGWLAE
Sbjct:  198 PKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGGLPICDGWLAE 285
[Close]
BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5JS97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS97_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.500e-47
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSRRSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRKE ETDRP LQDVPIAVSNDRLEELLGE AVRKLLGEGHTLTGLRVS VFLGDYLPS+RSKKPPTRANLGIPEGGLLTCDGWLAE
Sbjct:  398 PKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGIPEGGLLTCDGWLAE 485
[Close]
BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5JKQ8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ8_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.760e-46
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSRRSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRKE ETDRP LQDVPIAVSNDRLEELLGE AVRKLLGEGHTLTGLRVS VFLGDYLPS+RSKKPPTRANLGI  GGLLTCDGWLAE
Sbjct:  274 PKRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKRSKKPPTRANLGILAGGLLTCDGWLAE 361
[Close]
BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5KDL1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL1_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.410e-31
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSR--RSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRK TETDRP L+DVPIAV+N+RLEEL+G+  VR L  +GHT+TGLRVS V LG++LP++  R K PP RANLG PEG LL+   W+AE
Sbjct:   42 PKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAE 131
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BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5KWY0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWY0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.740e-30
Identity = 59/89 (66.29%), Postives = 67/89 (75.28%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSRR-SKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRK  E DRP LQDVPI VSN++LEELLGE  V K   EGHT+ G+RVS V LG YLP+ R  KK PTRANLGIP+GGLLT + W+A 
Sbjct:  142 PKRKAREADRPSLQDVPIVVSNEQLEELLGERGVHKARAEGHTIPGIRVSTVLLGPYLPNNRPKKKTPTRANLGIPDGGLLTDEEWMAR 230
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BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5JZP3_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.960e-29
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSR--RSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRK TETDRP L+DVPIAV+N+RLEEL+G+  VR L  +GHT+TGLRVS V LG++LP++  R K PP  ANLG PEG LL+   W+AE
Sbjct:  142 PKRKVTETDRPSLEDVPIAVTNERLEELIGDRGVRALSAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKWANLGRPEGNLLSAPEWVAE 231
[Close]
BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.230e-28
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSR--RSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRK TETDRP L+DVPIAV+N+RLEEL+G+  VR L  +GHT+TGLRVS V LG++LP++  R K PP RANLG PEG LL+   W+AE
Sbjct:  406 PKRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPNKNKRPKGPPKRANLGRPEGNLLSAPEWVAE 495
[Close]
BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Match: A0A6H5KF88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF88_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.020e-27
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -1 
Query:    1 PKRKETETDRPRLQDVPIAVSNDRLEELLGESAVRKLLGEGHTLTGLRVSAVFLGDYLPSR--RSKKPPTRANLGIPEGGLLTCDGWLAE 264
            PKRK TETDRP L DVPIAV+N+RLEEL+G+  VR L  +GHT+TGLRVS V LG++LPS+  R K PP RANL  PEG LL+   W+AE
Sbjct:  116 PKRKVTETDRPPLADVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFLPSKNKRPKGPPKRANLDRPEGNLLSAPEWVAE 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE34_9PHAE1.760e-4894.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH00_9PHAE5.180e-4894.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9Z8_9PHAE1.160e-4792.05DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JS97_9PHAE2.500e-4794.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKQ8_9PHAE1.760e-4692.05DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KDL1_9PHAE2.410e-3164.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KWY0_9PHAE2.740e-3066.29DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JZP3_9PHAE3.960e-2963.33DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JYX7_9PHAE2.230e-2864.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF88_9PHAE1.020e-2764.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1444492..1444878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size389
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.5349107-CDS-P-fluviatile_contig12:1444491..14448781622815489.5349107-CDS-P-fluviatile_contig12:1444491..1444878Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1444492..1444878 +
1693562047.5097878-CDS-P-fluviatile_contig12:1444491..14448781693562047.5097878-CDS-P-fluviatile_contig12:1444491..1444878Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1444492..1444878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1422.1prot_P-fluviatile_contig12.1422.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1444492..1444878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1422.1

>prot_P-fluviatile_contig12.1422.1 ID=prot_P-fluviatile_contig12.1422.1|Name=mRNA_P-fluviatile_contig12.1422.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
LRQPPVTSEKSSLWNAQVRPGWRLLGSPAGQVVAEKHRAHAESREGVAFP
QELADGAFAQQFLQPIVAHGDGDVLQARAVGFRLLPLGLGFSSRLSARSL
STGQRPAPAKEALLMSGVKLVLHACPITE
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mRNA from alignment at P-fluviatile_contig12:1444492..1444878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1422.1 ID=mRNA_P-fluviatile_contig12.1422.1|Name=mRNA_P-fluviatile_contig12.1422.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=387bp|location=Sequence derived from alignment at P-fluviatile_contig12:1444492..1444878+ (Porterinema fluviatile SAG_2381)
CTCCGCCAACCACCCGTCACAAGTGAGAAGTCCTCCCTCTGGAATGCCCA
AGTTCGCCCGGGTTGGCGGCTTCTTGGATCGCCTGCTGGGCAGGTAGTCG
CCGAGAAACACCGCGCTCACGCGGAGTCCCGTGAGGGTGTGGCCTTCCCC
CAGGAGCTTGCGGACGGCGCTTTCGCCCAGCAATTCCTCCAGCCGATCGT
TGCTCACGGCGATGGGGACGTCTTGCAGGCGAGGGCGGTCGGTTTCCGTC
TCCTTCCTCTTGGGTTGGGTTTCAGCAGCCGACTGAGTGCCCGTTCCTTG
TCCACCGGCCAAAGGCCCGCCCCGGCGAAGGAAGCTTTGTTGATGTCCGG
CGTAAAGCTCGTGCTCCACGCTTGCCCGATCACGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1444492..1444878+

>mRNA_P-fluviatile_contig12.1422.1 ID=mRNA_P-fluviatile_contig12.1422.1|Name=mRNA_P-fluviatile_contig12.1422.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig12:1444492..1444878+ (Porterinema fluviatile SAG_2381)
CTCCGCCAACCACCCGTCACAAGTGAGAAGTCCTCCCTCTGGAATGCCCA
AGTTCGCCCGGGTTGGCGGCTTCTTGGATCGCCTGCTGGGCAGGTAGTCG
CCGAGAAACACCGCGCTCACGCGGAGTCCCGTGAGGGTGTGGCCTTCCCC
CAGGAGCTTGCGGACGGCGCTTTCGCCCAGCAATTCCTCCAGCCGATCGT
TGCTCACGGCGATGGGGACGTCTTGCAGGCGAGGGCGGTCGGTTTCCGTC
TCCTTCCTCTTGGGTTGGGTTTCAGCAGCCGACTGAGTGCCCGTTCCTTG
TCCACCGGCCAAAGGCCCGCCCCGGCGAAGGAAGCTTTGTTGATGTCCGG
CGTAAAGCTCGTGCTCCACGCTTGCCCGATCACGGAGCTCCGCCAACCAC
CCGTCACAAGTGAGAAGTCCTCCCTCTGGAATGCCCAAGTTCGCCCGGGT
TGGCGGCTTCTTGGATCGCCTGCTGGGCAGGTAGTCGCCGAGAAACACCG
CGCTCACGCGGAGTCCCGTGAGGGTGTGGCCTTCCCCCAGGAGCTTGCGG
ACGGCGCTTTCGCCCAGCAATTCCTCCAGCCGATCGTTGCTCACGGCGAT
GGGGACGTCTTGCAGGCGAGGGCGGTCGGTTTCCGTCTCCTTCCTCTTGG
GTTGGGTTTCAGCAGCCGACTGAGTGCCCGTTCCTTGTCCACCGGCCAAA
GGCCCGCCCCGGCGAAGGAAGCTTTGTTGATGTCCGGCGTAAAGCTCGTG
CTCCACGCTTGCCCGATCACGGAG
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