mRNA_P-fluviatile_contig7.13659.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13659.1
Unique NamemRNA_P-fluviatile_contig7.13659.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13659.1 vs. uniprot
Match: D8LME5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME5_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 3.120e-62
Identity = 129/238 (54.20%), Postives = 138/238 (57.98%), Query Frame = 1 
Query:  148 PQSSLDLSLRWEGFVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTLMLGSFVAKLEGVTIVIRGDAGKANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHADGGSESGSQSGRARASRPRTGRRRPLPRWLKWVLRRLKVKLADVTLRYESVGMCPLQGAAPAAVEVTLGSLEVQPVSLQGASAWFKQQVQAQHKNPQHQYREELLIRG 861
            P+SSLDLSLRWEG VLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTL+LG                                                                                           P+ GR+RP+PRWLKWVLRRLKVKLADVTLRYESVGMCPLQGAAPAAVEVTLGSLEVQPVSLQGASAWFK+QVQA+HK+ Q  YRE   + G
Sbjct:  191 PESSLDLSLRWEGVVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWYTLLLG-------------------------------------------------------------------------------------------PKAGRQRPMPRWLKWVLRRLKVKLADVTLRYESVGMCPLQGAAPAAVEVTLGSLEVQPVSLQGASAWFKRQVQAEHKSLQ--YREGEKVTG 335
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME5_ECTSI3.120e-6254.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:3134788..3138909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13A N-terminal domain
Ec32 orthologEc-05_002470.1
Exons6
Model size905
Cds size903
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13659.1prot_P-fluviatile_contig7.13659.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 3134788..3138909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817140.460547-CDS-P-fluviatile_contig7:3134787..31348471622817140.460547-CDS-P-fluviatile_contig7:3134787..3134847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3134788..3134847 -
1693571261.5978587-CDS-P-fluviatile_contig7:3134787..31348471693571261.5978587-CDS-P-fluviatile_contig7:3134787..3134847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3134788..3134847 -
1622817140.4706388-CDS-P-fluviatile_contig7:3135723..31358581622817140.4706388-CDS-P-fluviatile_contig7:3135723..3135858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3135724..3135858 -
1693571261.6128676-CDS-P-fluviatile_contig7:3135723..31358581693571261.6128676-CDS-P-fluviatile_contig7:3135723..3135858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3135724..3135858 -
1622817140.4796104-CDS-P-fluviatile_contig7:3136524..31366451622817140.4796104-CDS-P-fluviatile_contig7:3136524..3136645Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3136525..3136645 -
1693571261.6230695-CDS-P-fluviatile_contig7:3136524..31366451693571261.6230695-CDS-P-fluviatile_contig7:3136524..3136645Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3136525..3136645 -
1622817140.489834-CDS-P-fluviatile_contig7:3137357..31376301622817140.489834-CDS-P-fluviatile_contig7:3137357..3137630Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3137358..3137630 -
1693571261.6335237-CDS-P-fluviatile_contig7:3137357..31376301693571261.6335237-CDS-P-fluviatile_contig7:3137357..3137630Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3137358..3137630 -
1622817140.5019655-CDS-P-fluviatile_contig7:3138105..31383341622817140.5019655-CDS-P-fluviatile_contig7:3138105..3138334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3138106..3138334 -
1693571261.6471367-CDS-P-fluviatile_contig7:3138105..31383341693571261.6471367-CDS-P-fluviatile_contig7:3138105..3138334Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3138106..3138334 -
1622817140.5118062-CDS-P-fluviatile_contig7:3138824..31389091622817140.5118062-CDS-P-fluviatile_contig7:3138824..3138909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3138825..3138909 -
1693571261.658714-CDS-P-fluviatile_contig7:3138824..31389091693571261.658714-CDS-P-fluviatile_contig7:3138824..3138909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 3138825..3138909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13659.1

>prot_P-fluviatile_contig7.13659.1 ID=prot_P-fluviatile_contig7.13659.1|Name=mRNA_P-fluviatile_contig7.13659.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=301bp
SSADVGRRGRSSGAAEAGGETTRTVARRGTGGAGGGAGVIGAAMAGGDEP
QSSLDLSLRWEGFVLKDVELRRDFLSELLGLPVDVPHAFVRRAVLHLPWY
TLMLGSFVAKLEGVTIVIRGDAGKANANFNATAAATAAGDDDGTGTANGN
GNGNGNGGASSSPEGAGGEHHHPSQQQHADGGSESGSQSGRARASRPRTG
RRRPLPRWLKWVLRRLKVKLADVTLRYESVGMCPLQGAAPAAVEVTLGSL
EVQPVSLQGASAWFKQQVQAQHKNPQHQYREELLIRGLAVSVEPLVDSPP
S
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mRNA from alignment at P-fluviatile_contig7:3134788..3138909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13659.1 ID=mRNA_P-fluviatile_contig7.13659.1|Name=mRNA_P-fluviatile_contig7.13659.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4122bp|location=Sequence derived from alignment at P-fluviatile_contig7:3134788..3138909- (Porterinema fluviatile SAG_2381)
TCTTCCGCCGATGTGGGACGGCGAGGACGGAGTTCAGGAGCGGCAGAGGC
TGGGGGGGAGACTACTCGGACTGTGGCCAGACGAGGTGGAATGATTGAGT
GCAACGCATGTTGTTTTTTTGTCGTCGCCTTCACAGAATAAACCTTGCCG
ATCACCGCCAGTAACTTCAAGTGTCCGTACTCTGTTCTACGGCATTGACT
CTGGGGTCACAGGCTTCAAGAAATACCTCGAAGGATGTACAAGAAAATGA
CAAAAATATAGGTGGATCCCAGAGAATCGCCCGAAGCGAACAAGACAAGT
AAAAAACTAGGCAACCCACAACCTCTCGAGCAGAATGCGCGCGTTGTTTG
CCTTGCGCGCGACTTCCATTGCGCTCTAACGGCTACAGAGAGGCCTGACC
CATTCGCACCCGCGAAGGAAGCCGTCGTCACTTCTTCGCTGCCCGCGCCG
GAAGGCCGTGATTTTTTTTTCACGTCACCCATCACCCACCCGCTCGCACA
AAATCCTTGGTAAAAATTCCACGGCTCTGCTGGTCATTCGCGCGCGTGTG
ATCCACGAATGTGCCTTTGCAAAAGGCACCGGCGGCGCCGGTGGCGGCGC
CGGTGTCATCGGAGCCGCGATGGCAGGAGGAGACGAGCCGCAGTCGTCTC
TCGACCTATCGTTGCGATGGGAGGGTTTCGTGCTCAAGGACGTGGAGCTG
CGGAGGGACTTCCTGTCCGAACTCCTTGGGCTGCCGGTGGACGTGCCGCA
CGCCTTCGTGAGGAGGGCGGTGCTTCACCTGCCGTGGTACACGCTAATGC
TCGGGTGAGAGAGCCGCCACGGCTCGTTCGTCGGTCGGATCCCTACCAGG
TTGACCGCGGCACAGTTTGCTTGACTTGCGGCGCCATGGGCTCGACTTGC
TTGCAGCAACTTGCGACTTGGGGTGCAAGCAGCTTTGCGTGTGTTGCAGG
ATCTTGATTGCGGTGTTGTCGCAGGCGAAGTGCTATCCCGCTTCTGTGTT
CACCTGACCTACCCCCTCCCTCCCCAACCCCTCGGAGTCTTGAGCCCACG
TCACGAAACCCTCCTCCGTTCCCCCGCTTCTCCTTCCCGGCAAAGCGGGC
GCAGCGAAGAATCGCCGTCCCCGCCCCGCCCTCCAACCGGCGCGGCGGCC
CACTCTGTGCAGCGGCCCACCATCTTCTCAACTCCATTTTTTTTCCTCCC
TTGCCCACACACCCCACCTTACCTATCTCCCGCTGCTGCCGTGTTCATGG
CTGTCGTTTCCGTCCTGTGGTGTGGGAAGGTCTTTCGTGGCGAAGCTAGA
AGGAGTCACGATCGTCATTCGCGGTGATGCGGGCAAAGCCAACGCTAACT
TCAATGCTACCGCAGCAGCAACAGCAGCCGGCGACGACGACGGCACCGGT
ACCGCCAACGGCAACGGCAACGGCAACGGCAACGGCGGTGCTTCTTCTTC
CCCAGAAGGCGCAGGCGGGGAGCATCACCACCCGTCGCAGCAGCAGCATG
CCGATGGCGGGAGCGAGAGCGGGAGTCAGAGCGGGCGGGCGAGGGCCTCG
AGGTTGGTCTTTTGGGGCTGAGGAGTGGGTGGCGCGTCGTGGAAAAGGTT
TCGTGTGGGATGGTGGTGGTGGTGGCGGCGGTGGCGGTGGCAGTGGTGGT
GATGGTGGCGGTGGTAGCAGAACTTCCAGCCGTCGAAGGCATTGGGTGAT
CGATGTTGCAGATGCCGCTACTGTTGATGCTGCTGTCCATGCATGGCGAC
CGGCGGCACCGTAATCTCCACCGCCCATGACAAGAAAAAACTCGTTGGTA
CCACGGCGAAAATGGTCGGTCTTCTCGAGATTAAAATCAAAAGATTAAAA
TCAAGAAACGGCCAGTGACGATTACACCCGGGTTTTGAATGGCCACTGAC
GCATAAACACAAACCGAGAATCTCTCCAACTGGCTCATCAGGAATAAGTT
GGATGGGTGCTCTTGGGTAGTAAAATTGATGTTTTTGTTCAAGTTTAAGC
ACGGGAACCGTTTGCCGTAAAACTTCGAAGTAAGAGGATTTGAAGGACAA
GTTGGCAACATCAAATCTTGAGCCTATTATCTTTTCTTGCTCATCACACA
AATGTTCGTATTTTTGGTGCCTGGGGCTGCAATGATGAACCCCCGTTCGG
CCTCGCCCCAAAACGGCAAGGTTTGGGCAAAATGACGAAGGCATTCGCAA
TGCCCATGAGTATCCCCTCCTCCCCCCCGCGGTTCCCACTCCATTGGTCC
CCCTTCCGAACAAGGCCGAGAACCGGCAGGCGGCGTCCGTTGCCCCGGTG
GCTGAAGTGGGTCCTACGGAGGCTCAAGGTCAAGCTTGCCGACGTGACCC
TGCGCTACGAGTCCGTCGGGATGTGTCCCCTGCAGGTGAGTCGTCACTAA
GTCGGTCAGTCGGTGCAGCAGGAGTAGCAAGGGGGAGGATAGCGGGGTGA
TCTCCAACGTTGAGACGTGCGCCGAGGGTTGACGCCAAGAAAGAGAAAGC
GAGAAAAGGGGCTTGAAATCGGAAACGTGTACAATGCCAGGGGAGTATAG
TGGGGACAAGGGAGGCGAGTGGCGTTTGCATGGTCGACTTACGTACCGGC
AGCTAAAGTCAAGGGCTCCGCATGGGTGTATCCGATGTTCCAAACGACTT
TTGTCGCGCTAAATTTGGCTTCCGCTCATAAGAAAAAAGCGAAACGCTCT
CTGATGTTAGTGTGTGAGTGAAAAAATGGCCAAGCGATTCCGTTCGACGC
GCACTGAATTTGGGCCTATGCACATGGAGAGTAGCGCCAAATTTAGGTTT
TGATCGACGAGTCAAAACTTGTACCAATCAAGTGTTGCTATACCGGCATG
AAGCCGGGTAAGAACAATCGCAATCGCATTCAAACCCCGCTGAAAGCGAG
CTGTCGGCTGCCGTTGTCTTGCTGCACGACGCTTGTTGGTCGCCGTTTGT
TTTTCTCAATCTCTCTTTCTCTCGCTCTCTCTCGGTCTCTCTCGCTCTCT
CTCTTGTTCTTCTTTATGCGGCTTGATCGAATACGGAATGGACGCACACA
GGGGGCGGCACCGGCCGCGGTCGAAGTCACCCTGGGAAGCCTGGAGGTAC
AGCCGGTCTCCTTGCAGGGGGCCTCCGCGTGGTTCAAGCAGCAGGTGCAG
GCGCAGCACAAGAATCCCCAACACCAGTACCGCGAGGTATGTAAGCGCTA
ACAGAGCGTAGTTTTTATCATCGAATCGGCGGGATAAAGCGCGGCGTTGG
AGATCCATGTGTGAGTATACTTCATACGAGGGCTCTGCCCTTTTTTTCCT
CTCTTGCTCGTGCAGGATTCATTGTTGTCGCATTTAGATTTTGCGCGATT
AAATTTTACCTGTATTAGTTTTTTCGTTGGGAGGGGAGTCGGCTGCAGGA
GTTGGCGCGTGTTCGAAGCAAGTTCGTGTTTTCTTTTTGGGTCAAGTCGC
GCAGATGCCTTTTCTTGTTGGGACGCCACAGTGCTCGATCCAGCTCGCTC
CTATGGGCCATTGTATTTGGTTCAACTCGCACCTCCTCGCTTGCGTTGGG
GTTGGTGATAACCAGCGACGACAGCTGTTTCGTGTGTGTTTAGGGTTTGC
CGAAAGCAGCGGTATTGCTTTGATATTTCTACCATTTTCCATGGTCTAGC
CTTTGCACCTGACGTCGTCACGAAACACAGAGCCACCAGGACCCTGTCCC
CTCCATCTGACTGGTGGCAGCTTGGGATGTCGCGAACATATATTATAATT
GTTTTGAGAGCAACAGCCAAGGGGTAGCCGAGCGCCCCGTGTACCATTCA
CAATGTGAACACCCTCCCTGGATATCTGAAATCCCACGGAGGCCCAAGTC
TGTCGTCACTGGCGACTACCTTTGACCACAGCCTACAATGTGCAGCTCTG
TTGCTAATTTATTCAAGGTGATAGGGAAATGGGGGGAAGTTGAGGCAAAC
GAGAGGAAGCGGCGGCCGACCGGCCCCACCTTCCTCTCCCGCCCGTTGGA
CTACTCTCGAGCAATATCCTCTTCCTCCCCTCCTCTCCACTCCCCGCCCT
CAACGCAAGCAGGAGCTCCTCATTCGTGGCCTGGCTGTGAGTGTCGAGCC
TCTCGTCGACTCTCCCCCTTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:3134788..3138909-

>mRNA_P-fluviatile_contig7.13659.1 ID=mRNA_P-fluviatile_contig7.13659.1|Name=mRNA_P-fluviatile_contig7.13659.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1806bp|location=Sequence derived from alignment at P-fluviatile_contig7:3134788..3138909- (Porterinema fluviatile SAG_2381)
TCTTCCGCCGATGTGGGACGGCGAGGACGGAGTTCAGGAGCGGCAGAGGC
TGGGGGGGAGACTACTCGGACTGTGGCCAGACGAGTCTTCCGCCGATGTG
GGACGGCGAGGACGGAGTTCAGGAGCGGCAGAGGCTGGGGGGGAGACTAC
TCGGACTGTGGCCAGACGAGGCACCGGCGGCGCCGGTGGCGGCGCCGGTG
TCATCGGAGCCGCGATGGCAGGAGGAGACGAGCCGCAGTCGTCTCTCGAC
CTATCGTTGCGATGGGAGGGTTTCGTGCTCAAGGACGTGGAGCTGCGGAG
GGACTTCCTGTCCGAACTCCTTGGGCTGCCGGTGGACGTGCCGCACGCCT
TCGTGAGGAGGGCGGTGCTTCACCTGCCGTGGTACACGCTAATGCTCGGG
CACCGGCGGCGCCGGTGGCGGCGCCGGTGTCATCGGAGCCGCGATGGCAG
GAGGAGACGAGCCGCAGTCGTCTCTCGACCTATCGTTGCGATGGGAGGGT
TTCGTGCTCAAGGACGTGGAGCTGCGGAGGGACTTCCTGTCCGAACTCCT
TGGGCTGCCGGTGGACGTGCCGCACGCCTTCGTGAGGAGGGCGGTGCTTC
ACCTGCCGTGGTACACGCTAATGCTCGGGTCTTTCGTGGCGAAGCTAGAA
GGAGTCACGATCGTCATTCGCGGTGATGCGGGCAAAGCCAACGCTAACTT
CAATGCTACCGCAGCAGCAACAGCAGCCGGCGACGACGACGGCACCGGTA
CCGCCAACGGCAACGGCAACGGCAACGGCAACGGCGGTGCTTCTTCTTCC
CCAGAAGGCGCAGGCGGGGAGCATCACCACCCGTCGCAGCAGCAGCATGC
CGATGGCGGGAGCGAGAGCGGGAGTCAGAGCGGGCGGGCGAGGGCCTCGA
GGTCTTTCGTGGCGAAGCTAGAAGGAGTCACGATCGTCATTCGCGGTGAT
GCGGGCAAAGCCAACGCTAACTTCAATGCTACCGCAGCAGCAACAGCAGC
CGGCGACGACGACGGCACCGGTACCGCCAACGGCAACGGCAACGGCAACG
GCAACGGCGGTGCTTCTTCTTCCCCAGAAGGCGCAGGCGGGGAGCATCAC
CACCCGTCGCAGCAGCAGCATGCCGATGGCGGGAGCGAGAGCGGGAGTCA
GAGCGGGCGGGCGAGGGCCTCGAGGCCGAGAACCGGCAGGCGGCGTCCGT
TGCCCCGGTGGCTGAAGTGGGTCCTACGGAGGCTCAAGGTCAAGCTTGCC
GACGTGACCCTGCGCTACGAGTCCGTCGGGATGTGTCCCCTGCAGGCCGA
GAACCGGCAGGCGGCGTCCGTTGCCCCGGTGGCTGAAGTGGGTCCTACGG
AGGCTCAAGGTCAAGCTTGCCGACGTGACCCTGCGCTACGAGTCCGTCGG
GATGTGTCCCCTGCAGGGGGCGGCACCGGCCGCGGTCGAAGTCACCCTGG
GAAGCCTGGAGGTACAGCCGGTCTCCTTGCAGGGGGCCTCCGCGTGGTTC
AAGCAGCAGGTGCAGGCGCAGCACAAGAATCCCCAACACCAGTACCGCGA
GGGGGCGGCACCGGCCGCGGTCGAAGTCACCCTGGGAAGCCTGGAGGTAC
AGCCGGTCTCCTTGCAGGGGGCCTCCGCGTGGTTCAAGCAGCAGGTGCAG
GCGCAGCACAAGAATCCCCAACACCAGTACCGCGAGGAGCTCCTCATTCG
TGGCCTGGCTGTGAGTGTCGAGCCTCTCGTCGACTCTCCCCCTTCCGAGC
TCCTCATTCGTGGCCTGGCTGTGAGTGTCGAGCCTCTCGTCGACTCTCCC
CCTTCC
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