mRNA_P-fluviatile_contig12.1349.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1349.1
Unique NamemRNA_P-fluviatile_contig12.1349.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig12.1349.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.560e-26
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = -3 
Query:  619 RYFAQMQGSPPGQRPATSVKTQAEKNKFDREVLQ-LLAPRSRHQ--SHHRPVQAIDFAEFADSWNDDVGKLERDMLSG-LQDARSEDDLIYRKSSNHLQQYWTESRKDVNVKRTMEPHTARLGALRQKLVVETATRDDVQESQDKRPASFGTTIGGYKIVFPVVAPVQAARAGPAPCA 1140
            R+FA+MQG+ PG+R  T+V TQAEK+KFDREV Q L++P  R Q   H R  Q+I+F  FA  WN+DVG++ER+ ++G L+ +   +  I RK+   LQ +WTESRK+VN  RT+E +  RL A+ +K       R  + E      A+ G TI G    FP+V   ++    PAP A
Sbjct:   59 RFFARMQGATPGERMTTAVITQAEKDKFDREVFQFLVSPEVRQQVAGHRRGTQSINFDAFAAKWNEDVGEIERNEVAGRLEVSGDANKKINRKAPFDLQSWWTESRKEVNTARTVEQNKDRLSAMYEK------NRVRLSEPSTAERAAVGMTITGQTFSFPLVHNGRSTLPRPAPSA 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J1_ECTSI2.560e-2643.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:462709..464240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1532
Cds size840
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.08866-CDS-P-fluviatile_contig12:462708..4635481622815489.08866-CDS-P-fluviatile_contig12:462708..463548Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 462709..463548 +
1693562047.389962-CDS-P-fluviatile_contig12:462708..4635481693562047.389962-CDS-P-fluviatile_contig12:462708..463548Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 462709..463548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815489.1005456-UTR-P-fluviatile_contig12:463548..4642401622815489.1005456-UTR-P-fluviatile_contig12:463548..464240Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 463549..464240 +
1693562047.3998232-UTR-P-fluviatile_contig12:463548..4642401693562047.3998232-UTR-P-fluviatile_contig12:463548..464240Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 463549..464240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1349.1prot_P-fluviatile_contig12.1349.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 462709..463548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1349.1

>prot_P-fluviatile_contig12.1349.1 ID=prot_P-fluviatile_contig12.1349.1|Name=mRNA_P-fluviatile_contig12.1349.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=280bp
RHVPLPAPSPTIQCRLNLSTSRQHRHFTCKKRHACRTRARSLCIIPVSHA
VREIGLSTLDPWHPTLCLLTFAVGLNVWQRTLVMTALLAPRLGFWGRNDR
ERTCRLGNRRVPHALLLSRRSTCTKRRTHILERTTSFSRFHERGVATRSC
GPRPFLRNLAHRSTSDVDRPPNTVFPVFDISATHAPHVKVRLATFLRPPF
TCATGEGARCRSSPGCLHRGYYRKYDLIATYGRPEAGRSLVLTFLHVVSR
RRFNHKFLPQSTEAGGVGFHCALDVHVLP*
back to top

mRNA from alignment at P-fluviatile_contig12:462709..464240+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1349.1 ID=mRNA_P-fluviatile_contig12.1349.1|Name=mRNA_P-fluviatile_contig12.1349.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1532bp|location=Sequence derived from alignment at P-fluviatile_contig12:462709..464240+ (Porterinema fluviatile SAG_2381)
CGCCACGTGCCACTCCCTGCCCCTTCCCCGACCATTCAGTGTAGACTTAA
TCTAAGTACTTCCAGGCAGCACCGGCACTTTACGTGCAAGAAACGCCACG
CATGCCGCACACGGGCAAGGTCTCTTTGTATCATACCGGTTTCTCACGCG
GTTCGGGAAATCGGGCTCTCTACGCTCGATCCCTGGCACCCGACACTCTG
CCTTTTGACCTTTGCGGTTGGCCTCAACGTGTGGCAGCGCACGCTTGTAA
TGACCGCACTCTTGGCACCGAGGTTGGGATTTTGGGGGAGGAACGACCGA
GAGCGAACTTGCCGGTTGGGGAACAGAAGGGTCCCACACGCGCTGCTGCT
CAGCAGGCGTTCCACCTGCACCAAACGTCGGACGCACATTCTCGAACGCA
CTACAAGCTTCAGCAGATTTCACGAACGTGGGGTCGCCACGCGAAGCTGT
GGCCCACGTCCGTTTTTGCGCAACCTCGCTCACAGGTCCACCTCCGACGT
CGATCGGCCCCCCAATACTGTCTTCCCCGTCTTCGACATCTCCGCCACCC
ACGCCCCCCACGTAAAAGTCAGGTTGGCTACCTTCCTCCGCCCCCCCTTC
ACCTGCGCAACGGGCGAAGGCGCACGGTGCCGGTCCAGCCCGGGCTGCCT
GCACCGGGGCTACTACCGGAAATACGATCTTATAGCCACCTATGGTCGTC
CCGAAGCTGGCCGGTCTCTTGTCCTGACTTTCCTGCACGTCGTCTCGCGT
CGCCGTTTCAACCACAAGTTTTTGCCGCAAAGCACCGAGGCGGGCGGTGT
GGGGTTCCATTGTGCGCTTGACGTTCACGTCCTTCCGTGACTCAGTCCAG
TATTGCTGAAGGTGGTTTGAGCTCTTACGGTAGATGAGGTCGTCTTCGGA
CCTGGCGTCCTGGAGTCCCGACAGCATGTCCCGTTCCAGCTTCCCGACGT
CGTCATTCCAGCTGTCCGCGAATTCGGCAAAGTCAATGGCCTGCACGGGC
CGGTGATGACTTTGGTGTCGGGATCGGGGCGCCAAGAGTTGCAGCACTTC
GCGATCGAACTTGTTCTTTTCCGCCTGCGTCTTCACACTAGTCGCCGGCC
GCTGACCTGGCGGACTGCCTTGCATCTGGGCAAAGTACCTGCCCATTCAA
ACGAAAGACCACGACGTGAAAGCATTACACACCCAGAAGGGGGAAAACGA
TCTCTAACTTCCGAGAGACAGGGGGATACCGCAAGCCTGAGGAAGACTGC
TCGTCGCTGATAAACGTGGTGGGAGTTTGACGGGCAGAAGGGGGAAAAAT
TATGGCAAGACAGAAATTCAACCATATTTTGGGTGATCGCGGATGCACCC
TGGTTTCTTCCTTGACAAGAAGCAAGATTTGGAACGAAGGAGGGGGACTT
GAAGATCAAGAACAGGGGCATCAAAACCGCTCAACTCACGTTCACAGAAA
AAAAAAATGTCTCCCAATTTCACGGAGTATACCTTGATGCCAGTACACTC
ATCGTGCAGTTGACTATTCAACATAGGCAATA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:462709..464240+

>mRNA_P-fluviatile_contig12.1349.1 ID=mRNA_P-fluviatile_contig12.1349.1|Name=mRNA_P-fluviatile_contig12.1349.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1680bp|location=Sequence derived from alignment at P-fluviatile_contig12:462709..464240+ (Porterinema fluviatile SAG_2381)
CGCCACGTGCCACTCCCTGCCCCTTCCCCGACCATTCAGTGTAGACTTAA
TCTAAGTACTTCCAGGCAGCACCGGCACTTTACGTGCAAGAAACGCCACG
CATGCCGCACACGGGCAAGGTCTCTTTGTATCATACCGGTTTCTCACGCG
GTTCGGGAAATCGGGCTCTCTACGCTCGATCCCTGGCACCCGACACTCTG
CCTTTTGACCTTTGCGGTTGGCCTCAACGTGTGGCAGCGCACGCTTGTAA
TGACCGCACTCTTGGCACCGAGGTTGGGATTTTGGGGGAGGAACGACCGA
GAGCGAACTTGCCGGTTGGGGAACAGAAGGGTCCCACACGCGCTGCTGCT
CAGCAGGCGTTCCACCTGCACCAAACGTCGGACGCACATTCTCGAACGCA
CTACAAGCTTCAGCAGATTTCACGAACGTGGGGTCGCCACGCGAAGCTGT
GGCCCACGTCCGTTTTTGCGCAACCTCGCTCACAGGTCCACCTCCGACGT
CGATCGGCCCCCCAATACTGTCTTCCCCGTCTTCGACATCTCCGCCACCC
ACGCCCCCCACGTAAAAGTCAGGTTGGCTACCTTCCTCCGCCCCCCCTTC
ACCTGCGCAACGGGCGAAGGCGCACGGTGCCGGTCCAGCCCGGGCTGCCT
GCACCGGGGCTACTACCGGAAATACGATCTTATAGCCACCTATGGTCGTC
CCGAAGCTGGCCGGTCTCTTGTCCTGACTTTCCTGCACGTCGTCTCGCGT
CGCCGTTTCAACCACAAGTTTTTGCCGCAAAGCACCGAGGCGGGCGGTGT
GGGGTTCCATTGTGCGCTTGACGTTCACGTCCTTCCGTGACGCCACGTGC
CACTCCCTGCCCCTTCCCCGACCATTCAGTGTAGACTTAATCTAAGTACT
TCCAGGCAGCACCGGCACTTTACGTGCAAGAAACGCCACGCATGCCGCAC
ACGGGCAAGGTCTCTTTGTATCATACCGGTTTCTCACGCGGTTCGGGAAA
TCGGGCTCTCTACGCTCGATCCCTGGCACCCGACACTCTGCCTTTTGACC
TTTGCGGTTGGCCTCAACGTGTGGCAGCGCACGCTTGTAATGACCGCACT
CTTGGCACCGAGGTTGGGATTTTGGGGGAGGAACGACCGAGAGCGAACTT
GCCGGTTGGGGAACAGAAGGGTCCCACACGCGCTGCTGCTCAGCAGGCGT
TCCACCTGCACCAAACGTCGGACGCACATTCTCGAACGCACTACAAGCTT
CAGCAGATTTCACGAACGTGGGGTCGCCACGCGAAGCTGTGGCCCACGTC
CGTTTTTGCGCAACCTCGCTCACAGGTCCACCTCCGACGTCGATCGGCCC
CCCAATACTGTCTTCCCCGTCTTCGACATCTCCGCCACCCACGCCCCCCA
CGTAAAAGTCAGGTTGGCTACCTTCCTCCGCCCCCCCTTCACCTGCGCAA
CGGGCGAAGGCGCACGGTGCCGGTCCAGCCCGGGCTGCCTGCACCGGGGC
TACTACCGGAAATACGATCTTATAGCCACCTATGGTCGTCCCGAAGCTGG
CCGGTCTCTTGTCCTGACTTTCCTGCACGTCGTCTCGCGTCGCCGTTTCA
ACCACAAGTTTTTGCCGCAAAGCACCGAGGCGGGCGGTGTGGGGTTCCAT
TGTGCGCTTGACGTTCACGTCCTTCCGTGA
back to top