mRNA_P-fluviatile_contig12.1339.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1339.1
Unique NamemRNA_P-fluviatile_contig12.1339.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5JL07_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL07_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 4.970e-53
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVLA+VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NYRE SGWVKGIGGDK
Sbjct:  126 RCEGWGHTKEKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDK 225
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5KM18_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM18_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.590e-52
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVLA+VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NYRE SGWVKGIGGDK
Sbjct:  187 RCEGWGHTKEKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDK 286
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5KEZ2_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.010e-52
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVL +VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NY E SGWVKGIGGDK
Sbjct:  238 RCEGWGHTKEKCATEEAVLVQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYHERSGWVKGIGGDK 337
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5KG71_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG71_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.980e-51
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVLA+VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NYRE SGWVKGIGGDK
Sbjct:  495 RCEGWGHTKEKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDK 594
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5KYD7_9PHAE (CCHC-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 7.250e-51
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGW HTK+KC+TEEAVLA+VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NYRE SGWVKGIGGDK
Sbjct:  234 RCEGWXHTKEKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDK 333
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5L3N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N6_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 7.290e-51
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVLA+VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NYRE SGWVKGIGGDK
Sbjct:  528 RCEGWGHTKEKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDK 627
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.260e-50
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVLA+VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NYRE SGWVKGIGGDK
Sbjct:  432 RCEGWGHTKEKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDK 531
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5J9T1_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9T1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.370e-50
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVLA+VVE  SDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQGQA+YVADTAATCSMFRCAD+F NYRE SGWVKGIGGDK
Sbjct:  454 RCEGWGHTKEKCATEEAVLAQVVEHGSDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIGGDK 553
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BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5JXN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN9_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 3.490e-50
Identity = 84/100 (84.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RCEGWGHTK+KC+TEEAVLA+VVE ESDVDSVEDQAFCAVA  PG+CGTVGE  LVGVVEQ QA+YVADTAATCSMFRCA +F NYR+ SGWVKGIGGDK
Sbjct:  213 RCEGWGHTKEKCATEEAVLAQVVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVEQDQAVYVADTAATCSMFRCAVNFVNYRKRSGWVKGIGGDK 312
[Close]
BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Match: A0A6H5JZU0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU0_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.570e-49
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:    1 RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTVGEXXLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK 300
            RC+GWGHTK+KC+TEEAVLA+VVE ESDVDSVED AFCAVA  PG CGTVGE  LVGV+EQGQAMYVADT ATCSMFRCAD+F NYR  SGWVKGIGGDK
Sbjct:  268 RCKGWGHTKEKCATEEAVLAQVVEHESDVDSVEDHAFCAVAVPPGNCGTVGEVGLVGVMEQGQAMYVADTVATCSMFRCADNFVNYRVRSGWVKGIGGDK 367
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL07_9PHAE4.970e-5387.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KM18_9PHAE1.590e-5287.00CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KEZ2_9PHAE3.010e-5285.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KG71_9PHAE3.980e-5187.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KYD7_9PHAE7.250e-5186.00CCHC-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5L3N6_9PHAE7.290e-5187.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAQ2_9PHAE3.260e-5087.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9T1_9PHAE3.370e-5086.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JXN9_9PHAE3.490e-5084.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU0_9PHAE1.570e-4983.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:400661..400962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.9953098-CDS-P-fluviatile_contig12:400660..4009601622815488.9953098-CDS-P-fluviatile_contig12:400660..400960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 400661..400960 +
1693562047.357063-CDS-P-fluviatile_contig12:400660..4009601693562047.357063-CDS-P-fluviatile_contig12:400660..400960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 400661..400960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1339.1prot_P-fluviatile_contig12.1339.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 400661..400960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1339.1

>prot_P-fluviatile_contig12.1339.1 ID=prot_P-fluviatile_contig12.1339.1|Name=mRNA_P-fluviatile_contig12.1339.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=100bp
RCEGWGHTKDKCSTEEAVLAEVVEQESDVDSVEDQAFCAVAGHPGKCGTV
GEVGLVGVVEQGQAMYVADTAATCSMFRCADHFANYRECSGWVKGIGGDK
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mRNA from alignment at P-fluviatile_contig12:400661..400962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1339.1 ID=mRNA_P-fluviatile_contig12.1339.1|Name=mRNA_P-fluviatile_contig12.1339.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=302bp|location=Sequence derived from alignment at P-fluviatile_contig12:400661..400962+ (Porterinema fluviatile SAG_2381)
CGATGCGAGGGGTGGGGCCACACCAAGGACAAGTGCTCGACGGAGGAGGC
TGTCCTAGCGGAGGTGGTGGAGCAGGAGAGCGATGTGGATTCCGTGGAAG
ACCAGGCGTTCTGCGCCGTAGCAGGCCATCCAGGCAAGTGTGGTACCGTT
GGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGTCAGGCGATGTACGT
GGCCGACACAGCGGCCACGTGCTCCATGTTTCGATGTGCAGACCACTTCG
CTAACTACCGTGAGTGTAGCGGTTGGGTGAAGGGGATCGGAGGCGACAAA
TC
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:400661..400962+

>mRNA_P-fluviatile_contig12.1339.1 ID=mRNA_P-fluviatile_contig12.1339.1|Name=mRNA_P-fluviatile_contig12.1339.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=600bp|location=Sequence derived from alignment at P-fluviatile_contig12:400661..400962+ (Porterinema fluviatile SAG_2381)
CGATGCGAGGGGTGGGGCCACACCAAGGACAAGTGCTCGACGGAGGAGGC
TGTCCTAGCGGAGGTGGTGGAGCAGGAGAGCGATGTGGATTCCGTGGAAG
ACCAGGCGTTCTGCGCCGTAGCAGGCCATCCAGGCAAGTGTGGTACCGTT
GGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGTCAGGCGATGTACGT
GGCCGACACAGCGGCCACGTGCTCCATGTTTCGATGTGCAGACCACTTCG
CTAACTACCGTGAGTGTAGCGGTTGGGTGAAGGGGATCGGAGGCGACAAA
CGATGCGAGGGGTGGGGCCACACCAAGGACAAGTGCTCGACGGAGGAGGC
TGTCCTAGCGGAGGTGGTGGAGCAGGAGAGCGATGTGGATTCCGTGGAAG
ACCAGGCGTTCTGCGCCGTAGCAGGCCATCCAGGCAAGTGTGGTACCGTT
GGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGTCAGGCGATGTACGT
GGCCGACACAGCGGCCACGTGCTCCATGTTTCGATGTGCAGACCACTTCG
CTAACTACCGTGAGTGTAGCGGTTGGGTGAAGGGGATCGGAGGCGACAAA
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