mRNA_P-fluviatile_contig12.1598.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1598.1
Unique NamemRNA_P-fluviatile_contig12.1598.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1598.1 vs. uniprot
Match: A0A6H5K4V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V7_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.880e-56
Identity = 123/247 (49.80%), Postives = 125/247 (50.61%), Query Frame = 1 
Query:  124 FSARLDRAWIHLDFGCADRWRG----SLWYTGAGMEPVEAHQPSPLQAKFARKGKGGPFPKFDTREESGDESGVEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPE-----------------------------------------------------------------------------------------------------------------IFDEWVETYGSYARSYTRVDRVRYR 513
            FSARLDRAW+HLD GCADRWR     SLWYTGAGMEPVE HQPSPLQAKFARKGKGGPFPKFDTREESGDES VEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPE                                                                                                                 +FDEWVE YGSYARSYTRVDRVRYR
Sbjct:  137 FSARLDRAWMHLDLGCADRWRACVQLSLWYTGAGMEPVETHQPSPLQAKFARKGKGGPFPKFDTREESGDESCVEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPEPNKALDFHAKTDGQIVDRLVENAANVYTGLYEGQKAGFRKESFDTLTASPNPLTMKPTFESVACFLADYRTENPKDLDRFNSHDIYAKMLAQIRATNDYDLLNKFFSDPGDQQVFDEWVEKYGSYARSYTRVDRVRYR 383
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V7_9PHAE1.880e-5649.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3427882..3430163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size539
Cds size537
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1598.1prot_P-fluviatile_contig12.1598.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3427882..3430163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815488.6930535-CDS-P-fluviatile_contig12:3427881..34279801622815488.6930535-CDS-P-fluviatile_contig12:3427881..3427980Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3427882..3427980 -
1693562047.0095553-CDS-P-fluviatile_contig12:3427881..34279801693562047.0095553-CDS-P-fluviatile_contig12:3427881..3427980Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3427882..3427980 -
1622815488.703529-CDS-P-fluviatile_contig12:3428472..34286251622815488.703529-CDS-P-fluviatile_contig12:3428472..3428625Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3428473..3428625 -
1693562047.0180774-CDS-P-fluviatile_contig12:3428472..34286251693562047.0180774-CDS-P-fluviatile_contig12:3428472..3428625Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3428473..3428625 -
1622815488.717521-CDS-P-fluviatile_contig12:3428790..34288871622815488.717521-CDS-P-fluviatile_contig12:3428790..3428887Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3428791..3428887 -
1693562047.0264819-CDS-P-fluviatile_contig12:3428790..34288871693562047.0264819-CDS-P-fluviatile_contig12:3428790..3428887Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3428791..3428887 -
1622815488.7310493-CDS-P-fluviatile_contig12:3429333..34294411622815488.7310493-CDS-P-fluviatile_contig12:3429333..3429441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3429334..3429441 -
1693562047.0350718-CDS-P-fluviatile_contig12:3429333..34294411693562047.0350718-CDS-P-fluviatile_contig12:3429333..3429441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3429334..3429441 -
1622815488.7433248-CDS-P-fluviatile_contig12:3429745..34297691622815488.7433248-CDS-P-fluviatile_contig12:3429745..3429769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3429746..3429769 -
1693562047.043978-CDS-P-fluviatile_contig12:3429745..34297691693562047.043978-CDS-P-fluviatile_contig12:3429745..3429769Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3429746..3429769 -
1622815488.756233-CDS-P-fluviatile_contig12:3430107..34301631622815488.756233-CDS-P-fluviatile_contig12:3430107..3430163Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3430108..3430163 -
1693562047.0548851-CDS-P-fluviatile_contig12:3430107..34301631693562047.0548851-CDS-P-fluviatile_contig12:3430107..3430163Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3430108..3430163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1598.1

>prot_P-fluviatile_contig12.1598.1 ID=prot_P-fluviatile_contig12.1598.1|Name=mRNA_P-fluviatile_contig12.1598.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=179bp
RLTPSAAGVAERGVCSSSGLDRALGSRFLKSSSRATAGLALFSARLDRAW
IHLDFGCADRWRGSLWYTGAGMEPVEAHQPSPLQAKFARKGKGGPFPKFD
TREESGDESGVEISRTEKQKRRKKRKSAAADLDGLQKRLQDRGHPEIFDE
WVETYGSYARSYTRVDRVRYRVIFFWGL*
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mRNA from alignment at P-fluviatile_contig12:3427882..3430163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1598.1 ID=mRNA_P-fluviatile_contig12.1598.1|Name=mRNA_P-fluviatile_contig12.1598.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2282bp|location=Sequence derived from alignment at P-fluviatile_contig12:3427882..3430163- (Porterinema fluviatile SAG_2381)
CGACTGACTCCCTCTGCTGCTGGTGTGGCGGAGAGAGGGGTGTGCAGCAG
CAGTGGGTGAGGTTCCCTTTTTTTGGTTGTGTGTGGTGTGCGGCAGTACC
GCCTACCGTGTTTGGCGCGTGCGAGGCAACCTTCAACTTTCCCTCCCTTG
ATGCCCGCGCGCTACGCCCGGTGATCTTCACCCGTGCCCCTTTTCCGGCG
CAACTGTGTTGTGCGCTTGGATCCACGATGATCCGTCTGCTACTGGTCGG
GGTACTTGGCTTCATTGCACCCTCTCAAGCAATGCAGATCAGCACACCCT
CATGATTTCCCGCCTGCACACACCACCACATGTTCGGAAGAAGCCCGCCG
AGCACAACTGCCGGCGCTCGTCACCGCTGCCCTTTTTTGGCCAGGCTGGA
TCGAGCGCTCGGATCCAGGTGGATCTCTCTGCTGCTGGTCGGCGGAGAGG
GCTGTGTAGCATCAGCGGATGAGGTTCTCTCTTTTTGGTTGTGTACGGTG
TGCGGCTGTACCGCCTACCGTGTTTGGCGCGCGCGAGGCAACCGATGCCC
GCACGGCTGCACCCGATGATCTTCACCCGTGCCCTTTTCCGGCGCTACTG
TATTGTGCGCTTGGATCCGGGTTGATCCGGTAGCGCTGAAAAGGTTCGGG
TATTTCGTGCCTCCTTGCATCCGTACACGCGTGTTCCTCCTCGTGACTTC
CCACCCGCGCACACCACCCCAGGTTTTTAAAGAGCTCGTCGCGCGCGACT
GCCGGCCTTGCCCTTTTTTCGGCGCGGCTGGATCGCGCTTGGATCCACCT
GGATTTTGGTTGTGCTGATCGGTGGAGAGGGTGTGTACAACTGTAGGCGA
GGTTTCCCTCATCGCATTCTGTTCGCGGCAGTACCGCATACACTAGACTG
ATCCAGACAATGGAAGTGTAGGGATGTAGCAATGTGCGCAGCAGAGGGTG
CGCTTTGCGCGTCTCTTGATCTCTCTCCTTCACACGCGGTGGTTGGTGCG
TCTGTGTAAGAGACACAAAAGCGCGTTTTTGACCTAACGGCGTGCACGCA
TTCTAAGTCATCGCCCCTTCTCACATTGATCGGCACGCGTGAGGTTTCCG
TGCTTTCGTCCCATCGAGCACTTCATTTTTGCAGTAAATAAACAGAGATG
GGTTGCTGGGAAAGCCGGGGTGGCGTCGTGCCCGTGTTCTTTCCGGAGCG
AACATTGTCGCGAAGAGTGTATGACGTAAGTTTTCAAATATCGCGCGGTT
GCTACATGACATGCCAATTTTTGCAGCAGTCTTTGGTACACCGGCGCCGG
GATGGAGCCCGTGGAGGCCCATCAACCTTCACCCCTGCAAGCCAAGTTCG
CAAGGAAAGGAAAAGGCGGACCGGTAAGCCGATGCTCAAAGTTGTTGATC
ACCATCAGTGGCGTTAACGTACGTGCTTGTTTTTCAGAATGCATGTAGAG
AGATCACAACCAGTCACCACCCGCTCGACAGTTTTGCTTTTTCGATCCAA
ACGAACTTTCACGCCCTTTCTTTGCTCACCGTGTTCAGTTCCCCAAGTTC
GACACTAGGGAGGAGAGTGGGGACGAGAGCGGTGTCGAAATCTCAAGGAC
GGAGAAGCAAAAACGTAGAAAGAAGAGGAAGTCGGCCGCTGCCGACCTTG
ACGGCCTGCAGAAACGTCTTCAAGACCGCGGTCATCCAGAGGTAATATCA
TCGTCAATTTATGGCTTTTACGCCGAAATCTGGCCTTAAAGCGGTCGTCA
GTCTCCCAGTCCGGCCCCACTTTCGTACTGTACATGACCCACCACCCTTT
CATTCCACGTCGCGTGCGACTTGTTGTTCGTCTCCGTTGTTCAGCCAAAC
AAGGCACTCGATTTTCACGCGAAGACCGATGGGCAAATCGTCGACAGGCT
TGTGGAGAATGCGGCGAACGTGTACACCGGCCTGGACGAGGGCCAGAAGG
CTGGCTTCCGAAAGGAGTCCTTCGATACCCTTACCGCATCTCCAAACCCC
TTGACCATGAAGCCGACCTTCGCATCGGTGGCATGCTTTCTCGCAGACTA
CCGCACCGAAAACCCCAAAGACCTCGACCGCTTTAACAGCCACGACGTTT
ACGCCAAGATGCTTGCCCAGATCAGAGCCACCAACGATTACGATCTTTTG
AACAAGTTCTTCAGCGACCCCGGTGACCAACAGATCTTCGACGAGTGGGT
GGAAACGTATGGTAGCTACGCCCGGAGCTACACACGAGTGGATCGAGTCC
GGTACAGGGTAATTTTTTTTTGGGGATTGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3427882..3430163-

>mRNA_P-fluviatile_contig12.1598.1 ID=mRNA_P-fluviatile_contig12.1598.1|Name=mRNA_P-fluviatile_contig12.1598.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1074bp|location=Sequence derived from alignment at P-fluviatile_contig12:3427882..3430163- (Porterinema fluviatile SAG_2381)
CGACTGACTCCCTCTGCTGCTGGTGTGGCGGAGAGAGGGGTGTGCAGCAG
CAGTGGCGACTGACTCCCTCTGCTGCTGGTGTGGCGGAGAGAGGGGTGTG
CAGCAGCAGTGGGCTGGATCGAGCGCTCGGATCCAGGCTGGATCGAGCGC
TCGGATCCAGGTTTTTAAAGAGCTCGTCGCGCGCGACTGCCGGCCTTGCC
CTTTTTTCGGCGCGGCTGGATCGCGCTTGGATCCACCTGGATTTTGGTTG
TGCTGATCGGTGGAGAGGGTTTTTAAAGAGCTCGTCGCGCGCGACTGCCG
GCCTTGCCCTTTTTTCGGCGCGGCTGGATCGCGCTTGGATCCACCTGGAT
TTTGGTTGTGCTGATCGGTGGAGAGGCAGTCTTTGGTACACCGGCGCCGG
GATGGAGCCCGTGGAGGCCCATCAACCTTCACCCCTGCAAGCCAAGTTCG
CAAGGAAAGGAAAAGGCGGACCGCAGTCTTTGGTACACCGGCGCCGGGAT
GGAGCCCGTGGAGGCCCATCAACCTTCACCCCTGCAAGCCAAGTTCGCAA
GGAAAGGAAAAGGCGGACCGTTCCCCAAGTTCGACACTAGGGAGGAGAGT
GGGGACGAGAGCGGTGTCGAAATCTCAAGGACGGAGAAGCAAAAACGTAG
AAAGAAGAGGAAGTCGGCCGCTGCCGACCTTGACGGCCTGCAGAAACGTC
TTCAAGACCGCGGTCATCCAGAGTTCCCCAAGTTCGACACTAGGGAGGAG
AGTGGGGACGAGAGCGGTGTCGAAATCTCAAGGACGGAGAAGCAAAAACG
TAGAAAGAAGAGGAAGTCGGCCGCTGCCGACCTTGACGGCCTGCAGAAAC
GTCTTCAAGACCGCGGTCATCCAGAGATCTTCGACGAGTGGGTGGAAACG
TATGGTAGCTACGCCCGGAGCTACACACGAGTGGATCGAGTCCGGTACAG
GGTAATTTTTTTTTGGGGATTGTAGATCTTCGACGAGTGGGTGGAAACGT
ATGGTAGCTACGCCCGGAGCTACACACGAGTGGATCGAGTCCGGTACAGG
GTAATTTTTTTTTGGGGATTGTAG
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