mRNA_P-fluviatile_contig7.13644.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13644.1
Unique NamemRNA_P-fluviatile_contig7.13644.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13644.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.590e-14
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 AGLRTFNMYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELK 165
            AGL+ F+MYRLIS+ VKPLQLGEPGRQKV       QRE + TPTDALDL+SELK
Sbjct:   21 AGLKQFDMYRLISELVKPLQLGEPGRQKV-------QRECWSTPTDALDLVSELK 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE2.590e-1470.91SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:2965750..2966119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13644.1prot_P-fluviatile_contig7.13644.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 2965771..2966119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817109.885073-UTR-P-fluviatile_contig7:2965749..29657701622817109.885073-UTR-P-fluviatile_contig7:2965749..2965770Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2965750..2965770 +
1693571156.1262949-UTR-P-fluviatile_contig7:2965749..29657701693571156.1262949-UTR-P-fluviatile_contig7:2965749..2965770Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 2965750..2965770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817109.8951573-CDS-P-fluviatile_contig7:2965770..29658331622817109.8951573-CDS-P-fluviatile_contig7:2965770..2965833Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2965771..2965833 +
1693571156.134563-CDS-P-fluviatile_contig7:2965770..29658331693571156.134563-CDS-P-fluviatile_contig7:2965770..2965833Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2965771..2965833 +
1622817109.9050624-CDS-P-fluviatile_contig7:2966038..29661191622817109.9050624-CDS-P-fluviatile_contig7:2966038..2966119Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2966039..2966119 +
1693571156.143217-CDS-P-fluviatile_contig7:2966038..29661191693571156.143217-CDS-P-fluviatile_contig7:2966038..2966119Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 2966039..2966119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13644.1

>prot_P-fluviatile_contig7.13644.1 ID=prot_P-fluviatile_contig7.13644.1|Name=mRNA_P-fluviatile_contig7.13644.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=48bp
MYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELK
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mRNA from alignment at P-fluviatile_contig7:2965750..2966119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13644.1 ID=mRNA_P-fluviatile_contig7.13644.1|Name=mRNA_P-fluviatile_contig7.13644.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=370bp|location=Sequence derived from alignment at P-fluviatile_contig7:2965750..2966119+ (Porterinema fluviatile SAG_2381)
GCGGGGCTGAGAACGTTTAACATGTACAGGCTGATTTCCGATCGTGTGAA
GCCCCTTCAGCTTGGAGAGCCCGGTCGACAGAAGGTGCGCAAACCGTGTG
ACGTATTCGTACCGTTTGTTCATGGTCGAAGGAGTGTGCTTCCGTGTTTT
CGTGGACGTCGCAAACGGGGGCTTTGACGGAGTACTGCCGGAGAATTGAA
AGTTGTACGTTGTCGCTGCATGTTTTGACATTCTTCGTCTTCCTTCGACA
TGCCGGCGCAACGTTTCTGAACATGGTATTGGGTAATAGGTCAGGAACAT
GGTCGCGAAGGTGCAGCGCGAGCTCTTCTGTACGCCGACCGACGCCCTCG
ATTTGATATCAGAGTTGAAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:2965750..2966119+

>mRNA_P-fluviatile_contig7.13644.1 ID=mRNA_P-fluviatile_contig7.13644.1|Name=mRNA_P-fluviatile_contig7.13644.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=288bp|location=Sequence derived from alignment at P-fluviatile_contig7:2965750..2966119+ (Porterinema fluviatile SAG_2381)
ATGTACAGGCTGATTTCCGATCGTGTGAAGCCCCTTCAGCTTGGAGAGCC
CGGTCGACAGAAGATGTACAGGCTGATTTCCGATCGTGTGAAGCCCCTTC
AGCTTGGAGAGCCCGGTCGACAGAAGGTCAGGAACATGGTCGCGAAGGTG
CAGCGCGAGCTCTTCTGTACGCCGACCGACGCCCTCGATTTGATATCAGA
GTTGAAAGTCAGGAACATGGTCGCGAAGGTGCAGCGCGAGCTCTTCTGTA
CGCCGACCGACGCCCTCGATTTGATATCAGAGTTGAAA
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