mRNA_P-fluviatile_contig12.1507.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1507.1
Unique NamemRNA_P-fluviatile_contig12.1507.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:2444681..2445013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815487.3702145-CDS-P-fluviatile_contig12:2444682..24447631622815487.3702145-CDS-P-fluviatile_contig12:2444682..2444763Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444683..2444763 -
1693562046.1453645-CDS-P-fluviatile_contig12:2444682..24447631693562046.1453645-CDS-P-fluviatile_contig12:2444682..2444763Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444683..2444763 -
1622815487.3882594-CDS-P-fluviatile_contig12:2444911..24450131622815487.3882594-CDS-P-fluviatile_contig12:2444911..2445013Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444912..2445013 -
1693562046.1545439-CDS-P-fluviatile_contig12:2444911..24450131693562046.1545439-CDS-P-fluviatile_contig12:2444911..2445013Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 2444912..2445013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1507.1prot_P-fluviatile_contig12.1507.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 2444683..2445013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1507.1

>prot_P-fluviatile_contig12.1507.1 ID=prot_P-fluviatile_contig12.1507.1|Name=mRNA_P-fluviatile_contig12.1507.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=61bp
IESKAAACSELAAATRRAKAAAKQAKNAHRKLVTVSELAHDVALDGGSQE
EEERAMASEDS
back to top

mRNA from alignment at P-fluviatile_contig12:2444681..2445013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1507.1 ID=mRNA_P-fluviatile_contig12.1507.1|Name=mRNA_P-fluviatile_contig12.1507.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=333bp|location=Sequence derived from alignment at P-fluviatile_contig12:2444681..2445013- (Porterinema fluviatile SAG_2381)
ATCGAGTCTAAAGCGGCCGCGTGCTCGGAATTGGCGGCAGCCACAAGAAG
AGCTAAGGCAGCTGCGAAGCAGGCAAAGAATGCCCACAGGAAGCTGGTTA
CGGTGAGTGTATGCCGTCGCTGGACCTGTATGTACATTTAACTTCATCCA
GTGATGCGGATCGAATTGGGTCGTGGTCTTCGATGACTTGCGACGGAATA
GCGCAAAAGCAACCAGTCCAATGCCTGTTTGACGTGCCTTTGGTGGACAG
GTTTCGGAACTTGCACATGACGTTGCCTTGGACGGTGGCAGTCAGGAGGA
GGAGGAGAGGGCAATGGCTTCAGAGGACAGCGT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:2444681..2445013-

>mRNA_P-fluviatile_contig12.1507.1 ID=mRNA_P-fluviatile_contig12.1507.1|Name=mRNA_P-fluviatile_contig12.1507.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=366bp|location=Sequence derived from alignment at P-fluviatile_contig12:2444681..2445013- (Porterinema fluviatile SAG_2381)
ATCGAGTCTAAAGCGGCCGCGTGCTCGGAATTGGCGGCAGCCACAAGAAG
AGCTAAGGCAGCTGCGAAGCAGGCAAAGAATGCCCACAGGAAGCTGGTTA
CGATCGAGTCTAAAGCGGCCGCGTGCTCGGAATTGGCGGCAGCCACAAGA
AGAGCTAAGGCAGCTGCGAAGCAGGCAAAGAATGCCCACAGGAAGCTGGT
TACGGTTTCGGAACTTGCACATGACGTTGCCTTGGACGGTGGCAGTCAGG
AGGAGGAGGAGAGGGCAATGGCTTCAGAGGACAGCGTTTCGGAACTTGCA
CATGACGTTGCCTTGGACGGTGGCAGTCAGGAGGAGGAGGAGAGGGCAAT
GGCTTCAGAGGACAGC
back to top