mRNA_P-fluviatile_contig12.1460.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1460.1
Unique NamemRNA_P-fluviatile_contig12.1460.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1968574..1970107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size427
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1460.1prot_P-fluviatile_contig12.1460.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1968574..1969963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.3608835-CDS-P-fluviatile_contig12:1968573..19687501622815486.3608835-CDS-P-fluviatile_contig12:1968573..1968750Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1968574..1968750 -
1693562043.4299357-CDS-P-fluviatile_contig12:1968573..19687501693562043.4299357-CDS-P-fluviatile_contig12:1968573..1968750Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1968574..1968750 -
1622815486.3741908-CDS-P-fluviatile_contig12:1969858..19699631622815486.3741908-CDS-P-fluviatile_contig12:1969858..1969963Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1969859..1969963 -
1693562043.437804-CDS-P-fluviatile_contig12:1969858..19699631693562043.437804-CDS-P-fluviatile_contig12:1969858..1969963Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1969859..1969963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815486.3846095-UTR-P-fluviatile_contig12:1969963..19701071622815486.3846095-UTR-P-fluviatile_contig12:1969963..1970107Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1969964..1970107 -
1693562043.5784984-UTR-P-fluviatile_contig12:1969963..19701071693562043.5784984-UTR-P-fluviatile_contig12:1969963..1970107Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 1969964..1970107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1460.1

>prot_P-fluviatile_contig12.1460.1 ID=prot_P-fluviatile_contig12.1460.1|Name=mRNA_P-fluviatile_contig12.1460.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=94bp
MGRKGKISPATKSSNGAAAPATETSLHHETLKMIQELGISGADPAATGAA
RGAPAKATAPSREASRKSSGGSGGGEVEGRGMGRGKAGRAVAQG
back to top

mRNA from alignment at P-fluviatile_contig12:1968574..1970107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1460.1 ID=mRNA_P-fluviatile_contig12.1460.1|Name=mRNA_P-fluviatile_contig12.1460.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1534bp|location=Sequence derived from alignment at P-fluviatile_contig12:1968574..1970107- (Porterinema fluviatile SAG_2381)
CAACAGACCACTCTCATTTCCCCGCGTTGTTTTGCGCTCCATCGTTTCGA
GAGCTTGCCTGAGGATATCCCGGCTTTGTCGGGTTGCAGTGTACTCTGCT
TTCTCAGATCAAATTTACACCCACTGAGACGCGACTTTTGAACCATGGGC
AGGAAAGGGAAGATTTCTCCGGCCACAAAGTCATCGAATGGCGCAGCAGC
ACCGGCCACCGAAACCTCTCTCCACCACGAGACCCTAAAGATGATACAGG
TATAGTTTCTTCCACCGTCACTTCTGCTTGTGGGAGCATCATCTGCCTTC
GGCGTGTGCGTCTTGGAAAGGAGATGCGGAGGAGAGTTGTAGCATAGCGG
TTGGTCCGATTGATCCTTGACCACTACACAGGGGATCAGAAGTACAGCAG
CGCAACAGCGCAGTAGCAGCAGCGGCGGCGGCGGCGGCAGCAGCAGAAAC
AGGCGCAAGTCCATCATCGGATTTGTAAACACGGATGTGATCGCGCTGCT
GCTGCAGCTCCGCGGTGACATGAAGCCGGCGTGATCGTCGCCACACCCCA
CCCCGCGGATTTTTTATGTCAATGTCAAACTTGACAGTCCCGAGCGGCGG
AACCTGTTTCTGTGGTTGGTTGTGCTATGGGTGGCTCCGTTTTGCCGCGA
CCTGCGTGCGTTGGGTCAAGTCTTTTGTGCTGACGTGGTACAATGTTGCG
TCTTTGCAGCAGATGTGCTTGAACGGTTTTCAAGATTATCTACGAGGAGC
AAATCGTGAATGCGTAGCAGCGATCTCGGAAGGGGGGGGGTTCCTGAGCG
GGGGAGATTTCTTCCGAATAGAATCAAAGTTGGCGTGCCTGAATCGGAAA
GAAACTCTTCAGACAAGCATAGAGAGGAGGGCAGCCGTTAAGTCGCAGAA
GCTATCACACCCGTAAAAGCATCGATTTTCAAGGCTCGATTACCCCGCGG
TACTAGAGGCCATTGCGTGTAATGGAGCGTCTTAAAGAAGATCGTGTCGA
GCCCTGTCGTGAACTATCGATACTCGCTAACCCCTCGCCATGCAGAAACA
AGCTTTAAGAATCGACCCAAAGGTTGTGAAATCTCATGCGAACTCACGGT
AAATCAGCAGTGGTGTGAGATCTTTTGTTATCCTCGTGGGCGCCGGCTCG
AAAACAGCAGATGCGAGTGGCTTCGTAGTCAACTGTGCCAGCCTTGTCAG
CACGCTCCGTTCGCCGCACGTCATGAAAGGGCGTGCATGATACCTCTCTC
GTCCACAAAGGTGGGCCTCCTCGTTCTGGAACGAAAGCACTCAACAATCG
CCAACAGAAGAAACGCGACGTCAACCGCGAAATCGAAAAAATGTTTCACC
TGCGCAGGAGCTCGGCATATCTGGTGCCGATCCTGCCGCCACTGGTGCTG
CCCGGGGCGCCCCCGCCAAAGCAACAGCGCCATCGAGAGAGGCGTCCCGC
AAATCCTCAGGCGGCAGCGGCGGCGGCGAAGTCGAGGGGCGGGGGATGGG
ACGGGGCAAGGCCGGCAGGGCGGTGGCCCAAGGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:1968574..1970107-

>mRNA_P-fluviatile_contig12.1460.1 ID=mRNA_P-fluviatile_contig12.1460.1|Name=mRNA_P-fluviatile_contig12.1460.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=564bp|location=Sequence derived from alignment at P-fluviatile_contig12:1968574..1970107- (Porterinema fluviatile SAG_2381)
ATGGGCAGGAAAGGGAAGATTTCTCCGGCCACAAAGTCATCGAATGGCGC
AGCAGCACCGGCCACCGAAACCTCTCTCCACCACGAGACCCTAAAGATGA
TACAGATGGGCAGGAAAGGGAAGATTTCTCCGGCCACAAAGTCATCGAAT
GGCGCAGCAGCACCGGCCACCGAAACCTCTCTCCACCACGAGACCCTAAA
GATGATACAGGAGCTCGGCATATCTGGTGCCGATCCTGCCGCCACTGGTG
CTGCCCGGGGCGCCCCCGCCAAAGCAACAGCGCCATCGAGAGAGGCGTCC
CGCAAATCCTCAGGCGGCAGCGGCGGCGGCGAAGTCGAGGGGCGGGGGAT
GGGACGGGGCAAGGCCGGCAGGGCGGTGGCCCAAGGGGAGCTCGGCATAT
CTGGTGCCGATCCTGCCGCCACTGGTGCTGCCCGGGGCGCCCCCGCCAAA
GCAACAGCGCCATCGAGAGAGGCGTCCCGCAAATCCTCAGGCGGCAGCGG
CGGCGGCGAAGTCGAGGGGCGGGGGATGGGACGGGGCAAGGCCGGCAGGG
CGGTGGCCCAAGGG
back to top