mRNA_P-fluviatile_contig12.1383.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1383.1
Unique NamemRNA_P-fluviatile_contig12.1383.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:974852..976993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size340
Cds size309
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1383.1prot_P-fluviatile_contig12.1383.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 974852..976962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.8364863-CDS-P-fluviatile_contig12:974851..9749551622815485.8364863-CDS-P-fluviatile_contig12:974851..974955Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 974852..974955 +
1693562042.9408336-CDS-P-fluviatile_contig12:974851..9749551693562042.9408336-CDS-P-fluviatile_contig12:974851..974955Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 974852..974955 +
1622815485.8552964-CDS-P-fluviatile_contig12:975862..9760121622815485.8552964-CDS-P-fluviatile_contig12:975862..976012Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 975863..976012 +
1693562042.9490716-CDS-P-fluviatile_contig12:975862..9760121693562042.9490716-CDS-P-fluviatile_contig12:975862..976012Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 975863..976012 +
1622815485.8664002-CDS-P-fluviatile_contig12:976907..9769621622815485.8664002-CDS-P-fluviatile_contig12:976907..976962Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 976908..976962 +
1693562043.1248538-CDS-P-fluviatile_contig12:976907..9769621693562043.1248538-CDS-P-fluviatile_contig12:976907..976962Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 976908..976962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.8790374-UTR-P-fluviatile_contig12:976962..9769931622815485.8790374-UTR-P-fluviatile_contig12:976962..976993Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 976963..976993 +
1693562043.2733212-UTR-P-fluviatile_contig12:976962..9769931693562043.2733212-UTR-P-fluviatile_contig12:976962..976993Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 976963..976993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1383.1

>prot_P-fluviatile_contig12.1383.1 ID=prot_P-fluviatile_contig12.1383.1|Name=mRNA_P-fluviatile_contig12.1383.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
HCRSKIKVGAIKTGPICSAALATPLKGGLTHWRLRAKTNRLVRKQRPSPR
PRSKTCPAGGGQKSPASARHCAYSRCSTPLLTRRSCRAGRQLRRTNQPPH
DR*
back to top

mRNA from alignment at P-fluviatile_contig12:974852..976993+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1383.1 ID=mRNA_P-fluviatile_contig12.1383.1|Name=mRNA_P-fluviatile_contig12.1383.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2142bp|location=Sequence derived from alignment at P-fluviatile_contig12:974852..976993+ (Porterinema fluviatile SAG_2381)
CACTGCCGCAGCAAAATCAAAGTTGGAGCGATCAAGACTGGGCCGATTTG
TTCAGCAGCATTGGCTACCCCCTTGAAGGGGGGATTGACGCATTGGCGAC
TGAGGTGGGCGTCACGTAGCCTCCTTCGACATTGCTGGTCCGAAAGTACG
CGACGAGGAAGGAGCCCCTTGGTTTTTCGTCTCAGAATGCGTCGAAGTAT
TTTACGCTTGCTGAACAGCTGGGGATAGCATGCCACAAACTGCAGGGGTG
TGCAAGAAATGTGATGACTCGGAATCTCTTTTTTGGCCCCACCGTTGGCG
TCATCATCGTTTCGTGGCCGCATGCTCCTAACGTTCATCGGTCTTATGAT
TCCTTATATATCCTTCCTGCTGATGTTTGTTGGCCACACCAGTCAGGCGC
TTGGCCTGCTGTGTGTGACGTACTCCAGGCAGACTCTTTATCGACATCTC
CCAGTAGGGGCAATTACGGTACCCTTTGTGGTTCAAATACTTAGCTCGCT
GTGCTACTGTAGATGACGCTAGATCTGTCATACCGATTATTTGCAGCTCG
ATCACCCCACAGTGGAGAGGGTTTCCGGTTCCCATGGTTGTGGGTTCCAG
GAAATTTCGTCGATCCCTCTCCAGTGGCTTATCGGTCGGTGTCGCCGCTT
TTTACATCAGTGGGTGCTTGGAGCTTTAAGCAAACAGTCGAGGGAGTATG
ATATGTTGCGTCACTGCCAGAGGTCTATTGCAAATACGAGGGCTCTAAGC
ACAAAAACCGTGACTGTAAACCTGCCCACCGGTCGTGCCGGTGAGGCCTC
TTGTTTTTTTGATAGACCTCTGCAATGCGCGATAAAAGTAATGTGGTGAA
CCTCTCGCCCGCTTGTGACCGCACACTTGCTCAAGATTTTCTGACTTGCT
GAAGACCGAAAGTGGAAGTTGGGTATCAACCGCCATCACCCCCCGCCACA
AATTCGTGATTGACCCCCCCCCCTCCTcCCCCTCGCGCTCCCTGCTCGCC
CCCGTCAGCAGGGCCAAGACGAACCGCCTAGTCCGCAAACAGCGGCCGTC
GCCGCGGCCCCGATCCAAGACTTGTCCAGCGGGTGGGGGGCAGAAATCCC
CAGCCAGCGCCAGACATTGCGCATACAGCCGTTGCTCGACGCCTCTCTTG
ACACGTCGCAGGTACGGCAGGTTTCCGGTGTGTGCGTGGTATTTGTATCG
GAGGTACTTGTATTAAAGGTTTTTGTATCGGAGGGGACAAACACGAACTC
GGCTGGCGAGGTGGAGATAGATCGAGCACGGCCGCCTGCAGCACGCCTGT
CCCTTCCTCGTGGGTTGACTTTTCTTTCTCATTCCTGCTTATGGCCGAAA
TAAGCCCATCTATTTCAGCCGTTATCGGGGGGGGGGCTGGAATCGTGAAT
AAATTCTTGCCGTTTCTCGGCCCACTTGTTGGGTCTCTCATACTTGCCCC
CCTTTCTCTGGTACTCCCCTCTCCTACTCATATACTTTCGTCGTCTCCCC
CCTTCCCTGTCCCTTCCTTcCCCTTCCCTTCTCTTCCCTTCCCTTCCCTT
CCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCTTCCCTTCCCTTC
CCTTCCCTTCCCTTCCCTTCCCTTCCTTCCCTTCCCTTCCTTCCCTTCCC
TTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTTCCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTTCCCTTCTC
TTCCCTTCCCCTGCCGGACTATCCCTTGCTTATTTTGCCGTTTCCCGTGC
GCGCTACTTGCCTCGCCGCCTCCCCGCCTCCCTGCATGCCTTGTACCTGC
TTCTCGGGGGCATTTAATCTATCTCAATCCACCGACCGTTCGGCGGAACC
AATCAGCTGCAGGGCCGGTCGTCAGCTTCGGAGGACAAACCAGCCGCCAC
ATGATCGTTGAACAACGGGCGTATGCGGGGCAGATTGTTCAT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig12:974852..976993+

>mRNA_P-fluviatile_contig12.1383.1 ID=mRNA_P-fluviatile_contig12.1383.1|Name=mRNA_P-fluviatile_contig12.1383.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig12:974852..976993+ (Porterinema fluviatile SAG_2381)
CACTGCCGCAGCAAAATCAAAGTTGGAGCGATCAAGACTGGGCCGATTTG
TTCAGCAGCATTGGCTACCCCCTTGAAGGGGGGATTGACGCATTGGCGAC
TGAGCACTGCCGCAGCAAAATCAAAGTTGGAGCGATCAAGACTGGGCCGA
TTTGTTCAGCAGCATTGGCTACCCCCTTGAAGGGGGGATTGACGCATTGG
CGACTGAGGGCCAAGACGAACCGCCTAGTCCGCAAACAGCGGCCGTCGCC
GCGGCCCCGATCCAAGACTTGTCCAGCGGGTGGGGGGCAGAAATCCCCAG
CCAGCGCCAGACATTGCGCATACAGCCGTTGCTCGACGCCTCTCTTGACA
CGTCGCAGGGCCAAGACGAACCGCCTAGTCCGCAAACAGCGGCCGTCGCC
GCGGCCCCGATCCAAGACTTGTCCAGCGGGTGGGGGGCAGAAATCCCCAG
CCAGCGCCAGACATTGCGCATACAGCCGTTGCTCGACGCCTCTCTTGACA
CGTCGCAGCTGCAGGGCCGGTCGTCAGCTTCGGAGGACAAACCAGCCGCC
ACATGATCGTTGACTGCAGGGCCGGTCGTCAGCTTCGGAGGACAAACCAG
CCGCCACATGATCGTTGA
back to top