mRNA_P-fluviatile_contig12.1341.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1341.1
Unique NamemRNA_P-fluviatile_contig12.1341.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:413815..414235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1341.1prot_P-fluviatile_contig12.1341.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 413902..414235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.541245-UTR-P-fluviatile_contig12:413814..4139011622815485.541245-UTR-P-fluviatile_contig12:413814..413901Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 413815..413901 +
1693562042.5804756-UTR-P-fluviatile_contig12:413814..4139011693562042.5804756-UTR-P-fluviatile_contig12:413814..413901Porterinema fluviatile SAG_2381UTRP-fluviatile_contig12 413815..413901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.5527787-CDS-P-fluviatile_contig12:413901..4139411622815485.5527787-CDS-P-fluviatile_contig12:413901..413941Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 413902..413941 +
1693562042.590095-CDS-P-fluviatile_contig12:413901..4139411693562042.590095-CDS-P-fluviatile_contig12:413901..413941Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 413902..413941 +
1622815485.5636554-CDS-P-fluviatile_contig12:413963..4142351622815485.5636554-CDS-P-fluviatile_contig12:413963..414235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 413964..414235 +
1693562042.7625573-CDS-P-fluviatile_contig12:413963..4142351693562042.7625573-CDS-P-fluviatile_contig12:413963..414235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 413964..414235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1341.1

>prot_P-fluviatile_contig12.1341.1 ID=prot_P-fluviatile_contig12.1341.1|Name=mRNA_P-fluviatile_contig12.1341.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
MRACDQAQPKTNGAAAAAAAGRRSSRTRDHRRRRAGGEGDAHRRAIQNEQ
ICHKSRCLVSFCSFERNTFHDNAPPVSCGMHVVWGRTPPPRHQPRTRARS
APEV
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mRNA from alignment at P-fluviatile_contig12:413815..414235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1341.1 ID=mRNA_P-fluviatile_contig12.1341.1|Name=mRNA_P-fluviatile_contig12.1341.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=421bp|location=Sequence derived from alignment at P-fluviatile_contig12:413815..414235+ (Porterinema fluviatile SAG_2381)
TGTCCCTGATAGATCTTTCCGGGAGAACGGTAGTTGACGACGTGCATTCA
GAGAGTAACAGCAGTGCCGTCGAGGTAGAGGGCGGCGATGCGTGCATGCG
ATCAAGCCCAGCCGAAGACCAACGGCGGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGGGAGAAGAAGCAGCAGGACGAGAGACCACA
GGAGGAGAAGGGCAGGAGGAGAAGGAGACGCTCACAGACGTGCGATACAA
AATGAACAAATCTGTCACAAATCTCGTTGCTTAGTCTCATTCTGTTCTTT
CGAACGGAATACTTTCCACGACAACGCACCCCCGGTATCCTGTGGGATGC
ACGTCGTTTGGGGAAGAACGCCGCCTCCGCGGCACCAGCCACGAACACGA
GCACGGAGTGCGCCGGAGGTA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:413815..414235+

>mRNA_P-fluviatile_contig12.1341.1 ID=mRNA_P-fluviatile_contig12.1341.1|Name=mRNA_P-fluviatile_contig12.1341.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig12:413815..414235+ (Porterinema fluviatile SAG_2381)
ATGCGTGCATGCGATCAAGCCCAGCCGAAGACCAACGGCGATGCGTGCAT
GCGATCAAGCCCAGCCGAAGACCAACGGCGCAGCAGCAGCAGCAGCAGCA
GGGAGAAGAAGCAGCAGGACGAGAGACCACAGGAGGAGAAGGGCAGGAGG
AGAAGGAGACGCTCACAGACGTGCGATACAAAATGAACAAATCTGTCACA
AATCTCGTTGCTTAGTCTCATTCTGTTCTTTCGAACGGAATACTTTCCAC
GACAACGCACCCCCGGTATCCTGTGGGATGCACGTCGTTTGGGGAAGAAC
GCCGCCTCCGCGGCACCAGCCACGAACACGAGCACGGAGTGCGCCGGAGG
TACAGCAGCAGCAGCAGCAGCAGGGAGAAGAAGCAGCAGGACGAGAGACC
ACAGGAGGAGAAGGGCAGGAGGAGAAGGAGACGCTCACAGACGTGCGATA
CAAAATGAACAAATCTGTCACAAATCTCGTTGCTTAGTCTCATTCTGTTC
TTTCGAACGGAATACTTTCCACGACAACGCACCCCCGGTATCCTGTGGGA
TGCACGTCGTTTGGGGAAGAACGCCGCCTCCGCGGCACCAGCCACGAACA
CGAGCACGGAGTGCGCCGGAGGTA
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