mRNA_P-fluviatile_contig64.13053.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig64.13053.1
Unique NamemRNA_P-fluviatile_contig64.13053.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig64.13053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig64contigP-fluviatile_contig64:324142..324494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817050.4646246-UTR-P-fluviatile_contig64:324141..3241581622817050.4646246-UTR-P-fluviatile_contig64:324141..324158Porterinema fluviatile SAG_2381UTRP-fluviatile_contig64 324142..324158 +
1693570939.203589-UTR-P-fluviatile_contig64:324141..3241581693570939.203589-UTR-P-fluviatile_contig64:324141..324158Porterinema fluviatile SAG_2381UTRP-fluviatile_contig64 324142..324158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817050.4747863-CDS-P-fluviatile_contig64:324158..3244941622817050.4747863-CDS-P-fluviatile_contig64:324158..324494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 324159..324494 +
1693570939.2120025-CDS-P-fluviatile_contig64:324158..3244941693570939.2120025-CDS-P-fluviatile_contig64:324158..324494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig64 324159..324494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig64.13053.1prot_P-fluviatile_contig64.13053.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig64 324159..324494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig64.13053.1

>prot_P-fluviatile_contig64.13053.1 ID=prot_P-fluviatile_contig64.13053.1|Name=mRNA_P-fluviatile_contig64.13053.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
MKAARGNFCLVGIRPLFRECRKGRRITHQIVREYKELSFYCCFPAEEAVS
TGVPPELFPFIPNHILGEGLSIICTPDSSNSGMQSFDSRTHMPVVFPFVA
FFICKNISCCA*
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mRNA from alignment at P-fluviatile_contig64:324142..324494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig64.13053.1 ID=mRNA_P-fluviatile_contig64.13053.1|Name=mRNA_P-fluviatile_contig64.13053.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=353bp|location=Sequence derived from alignment at P-fluviatile_contig64:324142..324494+ (Porterinema fluviatile SAG_2381)
AGTGAATTCAAAACTACATGAAGGCAGCCCGGGGCAATTTTTGTTTGGTA
GGAATCCGTCCACTTTTTCGGGAGTGCCGGAAGGGCAGGCGCATCACCCA
CCAAATCGTCAGGGAGTACAAAGAGTTGTCATTCTATTGCTGTTTTCCCG
CCGAAGAAGCGGTGAGCACCGGCGTTCCACCCGAATTGTTCCCTTTTATC
CCAAACCACATACTTGGTGAAGGACTGAGTATCATTTGCACTCCCGACAG
CTCGAATTCGGGCATGCAAAGTTTCGACTCAAGAACACACATGCCTGTGG
TTTTCCCGTTCGTCGCCTTTTTCATCTGCAAAAATATCAGTTGTTGTGCA
TGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig64:324142..324494+

>mRNA_P-fluviatile_contig64.13053.1 ID=mRNA_P-fluviatile_contig64.13053.1|Name=mRNA_P-fluviatile_contig64.13053.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=672bp|location=Sequence derived from alignment at P-fluviatile_contig64:324142..324494+ (Porterinema fluviatile SAG_2381)
ATGAAGGCAGCCCGGGGCAATTTTTGTTTGGTAGGAATCCGTCCACTTTT
TCGGGAGTGCCGGAAGGGCAGGCGCATCACCCACCAAATCGTCAGGGAGT
ACAAAGAGTTGTCATTCTATTGCTGTTTTCCCGCCGAAGAAGCGGTGAGC
ACCGGCGTTCCACCCGAATTGTTCCCTTTTATCCCAAACCACATACTTGG
TGAAGGACTGAGTATCATTTGCACTCCCGACAGCTCGAATTCGGGCATGC
AAAGTTTCGACTCAAGAACACACATGCCTGTGGTTTTCCCGTTCGTCGCC
TTTTTCATCTGCAAAAATATCAGTTGTTGTGCATGAATGAAGGCAGCCCG
GGGCAATTTTTGTTTGGTAGGAATCCGTCCACTTTTTCGGGAGTGCCGGA
AGGGCAGGCGCATCACCCACCAAATCGTCAGGGAGTACAAAGAGTTGTCA
TTCTATTGCTGTTTTCCCGCCGAAGAAGCGGTGAGCACCGGCGTTCCACC
CGAATTGTTCCCTTTTATCCCAAACCACATACTTGGTGAAGGACTGAGTA
TCATTTGCACTCCCGACAGCTCGAATTCGGGCATGCAAAGTTTCGACTCA
AGAACACACATGCCTGTGGTTTTCCCGTTCGTCGCCTTTTTCATCTGCAA
AAATATCAGTTGTTGTGCATGA
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