prot_P-fluviatile_contig11.1281.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig11.1281.1
Unique Nameprot_P-fluviatile_contig11.1281.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length51
Homology
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BLAST of mRNA_P-fluviatile_contig11.1281.1 vs. uniprot
Match: D8LU40_ECTSI (60S ribosomal protein L29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU40_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.330e-10
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0 
Query:    1 HTGRNATFKDHANGIKKAPNHKYKSMKGV 29
            HTGRNATFKDH NGIKKAPNHKYKSMKG+
Sbjct:    7 HTGRNATFKDHVNGIKKAPNHKYKSMKGM 35
[Close]
BLAST of mRNA_P-fluviatile_contig11.1281.1 vs. uniprot
Match: A0A835YVJ7_9STRA (60S ribosomal protein L29 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ7_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 6.050e-6
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0 
Query:    1 HTGRNATFKDHANGIKKAPNHKYKSMKGV 29
            HTGRNA+ KDHANGIKKAP  KY S+KG+
Sbjct:    6 HTGRNASAKDHANGIKKAPRFKYNSLKGM 34
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU40_ECTSI1.330e-1093.1060S ribosomal protein L29 n=1 Tax=Ectocarpus silic... [more]
A0A835YVJ7_9STRA6.050e-675.8660S ribosomal protein L29 (Fragment) n=1 Tax=Tribo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002673Ribosomal protein L29ePFAMPF01779Ribosomal_L29ecoord: 1..30
e-value: 2.6E-10
score: 40.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3273020..3273172 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1281.1mRNA_P-fluviatile_contig11.1281.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig11 3273020..3276352 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig11.1281.1 ID=prot_P-fluviatile_contig11.1281.1|Name=mRNA_P-fluviatile_contig11.1281.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=51bp
HTGRNATFKDHANGIKKAPNHKYKSMKGVSKSGRSISLRHVCICFLLYPI
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002673Ribosomal_L29e