mRNA_P-fluviatile_contig11.1281.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1281.1
Unique NamemRNA_P-fluviatile_contig11.1281.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1281.1 vs. uniprot
Match: D8LU40_ECTSI (60S ribosomal protein L29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU40_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.180e-7
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 HTGRNATFKDHANGIKKAPNHKYKSMKGV 87
            HTGRNATFKDH NGIKKAPNHKYKSMKG+
Sbjct:    7 HTGRNATFKDHVNGIKKAPNHKYKSMKGM 35
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU40_ECTSI1.180e-793.1060S ribosomal protein L29 n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3273020..3276352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein L29e
Ec32 orthologEc-16_000110.1
Exons2
Model size2520
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1281.1prot_P-fluviatile_contig11.1281.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3273020..3273172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.9813256-CDS-P-fluviatile_contig11:3273019..32731721622815478.9813256-CDS-P-fluviatile_contig11:3273019..3273172Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3273020..3273172 +
1693561997.934758-CDS-P-fluviatile_contig11:3273019..32731721693561997.934758-CDS-P-fluviatile_contig11:3273019..3273172Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3273020..3273172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.9999433-UTR-P-fluviatile_contig11:3273172..32746081622815478.9999433-UTR-P-fluviatile_contig11:3273172..3274608Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3273173..3274608 +
1693561997.9450927-UTR-P-fluviatile_contig11:3273172..32746081693561997.9450927-UTR-P-fluviatile_contig11:3273172..3274608Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3273173..3274608 +
1622815479.0169387-UTR-P-fluviatile_contig11:3275421..32763521622815479.0169387-UTR-P-fluviatile_contig11:3275421..3276352Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3275422..3276352 +
1693561997.9682436-UTR-P-fluviatile_contig11:3275421..32763521693561997.9682436-UTR-P-fluviatile_contig11:3275421..3276352Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3275422..3276352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1281.1

>prot_P-fluviatile_contig11.1281.1 ID=prot_P-fluviatile_contig11.1281.1|Name=mRNA_P-fluviatile_contig11.1281.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=51bp
HTGRNATFKDHANGIKKAPNHKYKSMKGVSKSGRSISLRHVCICFLLYPI
*
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mRNA from alignment at P-fluviatile_contig11:3273020..3276352+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1281.1 ID=mRNA_P-fluviatile_contig11.1281.1|Name=mRNA_P-fluviatile_contig11.1281.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3333bp|location=Sequence derived from alignment at P-fluviatile_contig11:3273020..3276352+ (Porterinema fluviatile SAG_2381)
CACACCGGGCGCAACGCCACCTTCAAGGACCACGCTAACGGCATCAAGAA
GGCGCCTAACCACAAGTACAAGAGCATGAAGGGGGTGAGCAAGTCTGGGC
GCTCCATTAGTCTTCGTCATGTATGCATCTGCTTTCTCCTGTACCCCATT
TAGCAGTCGTAGAGTGGTCCATCTCGACTGCTCGAGGAGGAGAGAGGAGC
GTCTCACGTCCCCCGAAAAAAAAGGCGACTCTGCTGTTGGAGGCAGGGAA
CTCGAGTCCGTTGGCGGCCGACGTTTTTTTGCCCGTCAATTTTAATTTTG
TTTATTTTTGCGCTGACGCGCGGGACGGTGGCCTCGCGTCGGATCTGTTC
TCACGAGTCGTGTGTTTCTTGCGGTGCTTTTTTTATTTTCCGTATGTTCG
TGGTGCGCGGGGGGGTATACCAGCTGCGCTGGTTGCCTCTATGTAAGCTA
TTTCCCACGCCAATATATCCCACCCGTTGTTCCCACACATGTTTAATTCT
TTTTAGGTGATTACGGGGTCGAATGCGGTTTTCAATCCTGCCCTCCGTTG
TAGATGTGATGGAGAGCTTTGTGCACGCGCAGTGAGGAAATCCTTAACTT
CCGCCGTTTCTGAAGGCCGTCTCGTTTTGGTTTGTTTCACAAACGCGGCC
CCGTGCTGGACATCGAAGTTCCTGAGCGCAGCTTTCCGCGAATTTGGCGC
TTGAGCGTTGTTGCCTCGAGTTTTGTGTTGGAGGGTTGTCTGCGTTCGTC
GCGATGTTGGCCGAGTCTGCTCCTTGAGCGGCGTGCTGTGCTGGCGCCAT
GAGGAAATCCATAACTTCCGCCGTTTCTGAAGGCCGTCTCATTTCGGTTT
GTCTTAAACCAAAAGCGGCCCCGTGCTGGACATCGAAGTTCCTGAGCGCC
TTCTACTCCGTATCCCGGTTTGAAACGAATGCTTCACGTTTAGCCCGTTT
GTGCGTTTGCGCGTGTGACTTTTGTCTTTTCTGGCAGGACGCTCTTCCAC
TCGTCGCTCGGACTGTCGCACACATTCCTGGATTTCGTTCAATTTTAATG
TTTTTACCTAATCTTGGCCAGCAATCAACTATAATTCACGCTCGATCAGA
TGATGGGTACATCGGACGATCGGCGTGGGTTGTTTGAAGTTGGAGCCTCC
CATTCGAACTTGAGGCATTCAGTCGACGGCGAACCATCGACTGGTAAATG
CACGCATACATGACCGGCACGGTCCACAACACCCAGAATACTCCCTGCCC
TTGACCTTCGCAGAGCTCTAATTATGCTCACCTCTCGTGATGTCGGCCAT
CCCCTTGCCCCCGACTTTCCCCATGTTTGCGTCGTCTGCGTTCTTTGGCT
CTCGCTTGCTCCGCATCGATTCGAATTGACCGTGGCTTTCGTTTCGCTGG
TACGGTGGCGACCGGCTCTCCATCGGACCGATCCGAATGAAATCGGGTCA
AAATGCTCTCTGCACCCAATCCATCTCCTTCGAACTGTTCTCTCCGGCCG
CTGTCGTGATATTGGCAAATGATGGCGCTGTCCCCGATCTTTCGATCGCC
CATCGTCCGCAGATGGACCCCAAGTTCCTCCGGAACCAGGTGAGGATACC
CCGCCCACTTCTGTGTCTTTGCCTGTGCCTCTGCTTCTCTTGTATCTGTC
CCACCCGCTCTTCCTTTCTCGAAACATCTTGATCGACGGAATTTTGTATG
TCGATACAGGTTGCGTAAGGTATGGGGCCACCTACCTCTGTATGGAGTGA
TATTATTTTTCGGAGGCAGCACGCCAATTGTCGTCGTTTCGAACGTACGC
GAGGTCGGTAGCATATAGCGCGCACGCGTCGGGAGATTGAGGACGAGCTC
GAGGTGTTCAGAAGTTTTAGCCCTCCCTGTACCACTGCTGTGCTGTCGCC
CCCGGGCGTCATCTGCTTTTTGCGCGATGGGACAGTCTTTAGATTGGCTG
GAGCACCCAAGGGCACACCATGGTTTGCGTTGCCACCACCGCTAAAAGCC
AGAGGCGATGTTAGCTTCCCCGCCCTCATCTCGTGCTTTGGGTAAATGCA
TAGAGCAGGCGGCGAGCACACGTAGGGTGGTAGTCTTACGTGGTGTGGTG
CATCATGGCGCCAAGATCGGTTTCTCACGCTAGCACCCCTCGGATCACGC
CTTGTTGGTTTCTTCCCGCTCGTTTGTTGACGACTTGTTGTGTTCACCGT
TCTCGCCCCTGTTCCTGTTACGATATTATTTACATACTCCCAAGACATTT
TGAATCGTGTTCAAGTTCACCTTCAGGCATGTGGGGTCGTGTCCCGATTC
GCTTACTCAACCGTGATGCCCTACCCGTCCCTGCCCCGGTGCCCCTCTTC
GTCCTTTGGTCTGCCGTTTCTGGTCGATGGCTTGTCGAACCGCCCCACGC
AGAAATTTGCCAAGAAGTACAACGGTACCAAGCGCGTCAAGGCGGATGAA
TAGACGTCCACACCTCCGTTGTCATGGAGGGCATTTCGAATTCCGTTGCA
GGTTCTTGATGTTGGGCTTCCGTACAGAAGATCGGCGTGGCGGTGAGGAT
GACGGGGGAAGGATTCCTTTATTCCCCCCTCCCCCCGCCCGCAACAACCC
GAATTTCTGGTCTGGGCTGTTGTGGTGCGGGGCAAGGGAGGCTCGAGGGA
TTTTGCTAAGCTAACCTTCGGTCTCTGGATCGATTCGGTTCCTTCATTTC
GTCTGTGATTTCGCCGGGTCTATTTCTTATCCGGAAATCGACGGTGGTTA
GCTGCGCGCCCTGGTGCCTGCGTTTTTGCCGCCTCGTGTCTTTCGCGGCG
AGCTCGAAGAGCATTTCGCCGCCGCCGTTCCGCTTCGCGTTTTCGCCTTT
GTTCGGGTCATCATCGCGGGATTCGTGACGCAATGACGCAAGCCGAAGCA
AGCGTTGGAGAGCGGGCTCACGCCCCCTTGGGCCGTGGATGGATCGCTTG
GCCGCAAGCGTAGGATGTTGTGGTATGATTCCGACAGTCTTTCCGGCTCC
TTTTTATCACCTTTGCCGAGAAGAGAGAGAGGGTGCTCGCCGTCCATTTT
TGCGTTGCCTCGTCTTGACCGCGCTGCTCGGTGGGGCATCAACAGTGCCG
CCCTGTCTCTGCGGTTTCTCGTCCGTTGCGATGACGGTCACTTGTGGCAT
CTGCCTTGGTCGTGTCATTGCAATGCACTTACGGAGAGAGCCGGCTTACA
TTCCGGCGGGGGCGTTGCTATGCCTCTAGCCGACACGCACCTGCAGATTG
CATACAGATATGTATATGTATGTTGTGCCCCCAAGCCAATCGACATCATG
AACGATGAAGGAAGGATGGAGGGTGCGAGGGGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3273020..3276352+

>mRNA_P-fluviatile_contig11.1281.1 ID=mRNA_P-fluviatile_contig11.1281.1|Name=mRNA_P-fluviatile_contig11.1281.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=306bp|location=Sequence derived from alignment at P-fluviatile_contig11:3273020..3276352+ (Porterinema fluviatile SAG_2381)
CACACCGGGCGCAACGCCACCTTCAAGGACCACGCTAACGGCATCAAGAA
GGCGCCTAACCACAAGTACAAGAGCATGAAGGGGGTGAGCAAGTCTGGGC
GCTCCATTAGTCTTCGTCATGTATGCATCTGCTTTCTCCTGTACCCCATT
TAGCACACCGGGCGCAACGCCACCTTCAAGGACCACGCTAACGGCATCAA
GAAGGCGCCTAACCACAAGTACAAGAGCATGAAGGGGGTGAGCAAGTCTG
GGCGCTCCATTAGTCTTCGTCATGTATGCATCTGCTTTCTCCTGTACCCC
ATTTAG
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