mRNA_P-fluviatile_contig11.1264.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1264.1
Unique NamemRNA_P-fluviatile_contig11.1264.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: D8LMZ4_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.300e-40
Identity = 124/158 (78.48%), Postives = 136/158 (86.08%), Query Frame = 1
Query:    1 MVIARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFELHVLEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVGGNSGLDRAG-VAEVLRKRPDVAIVWDD 471
            MVIARSLKDAARLGSATTSLLLR SEDLVC+N+ CAK+G +C+CRLA+HLSRLGKL+ELDVA+N LG LPEPVFEL     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHV GNSGL  +  V E L+ RP   +V+ D
Sbjct:    1 MVIARSLKDAARLGSATTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLGSSDRVVEALQHRPQTTVVFGD 158          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: A0A1V9ZV51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV51_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.140e-16
Identity = 38/79 (48.10%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    4 VIARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFELHVLE 240
            +IA+SL+DAA   S+   L+LR S+DLVC+N+ C ++G +C+C+L+L L RL +L ELDV++N L  LP  +F+L  L+
Sbjct:    1 MIAKSLRDAATHTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQLSKLK 79          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: K3WPL3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPL3_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 6.500e-16
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   10 ARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFEL 228
            ARSL++ AR G A  SLLL SS+DL+CKN+ C  +GSSC C+L+L L RL +L+E+D+++N L FLPE  F+L
Sbjct:   20 ARSLREVAR-GHAVHSLLLPSSQDLICKNMMCEHVGSSCACKLSLVLERLPQLQEMDLSNNKLRFLPESTFQL 91          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: A0A836CFY3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.710e-15
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    4 VIARSLKDAARLG--SATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFEL-HVLEH 243
            ++A SL +A+ +       SL+LRSSEDL+C+NI C KLG +CLCRLA+ L R   L+ LD+A NGL  LPE V E  H L H
Sbjct:    9 LVAASLAEASSMAPQGGPVSLVLRSSEDLLCRNIMCEKLGGACLCRLAVCLGRCSGLQSLDLAKNGLATLPEAVLEQQHHLRH 91          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: A0A8K1FBU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBU8_PYTOL)

HSP 1 Score: 76.6 bits (187), Expect = 9.580e-15
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 VIARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFEL 228
            V+ARSL+D AR G    +LLL  S+DL+CKN+ C  +GSSC C+L+L L R+ +LRE+D++ N L FLP   F L
Sbjct:    5 VVARSLRDVAR-GQRVQALLLARSQDLICKNLMCEHVGSSCACKLSLVLERVPELREMDLSGNQLRFLPVSTFAL 78          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: A0A1V9Z9Y8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9Y8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.100e-14
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 VIARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFEL 228
            +IA+SL++AA   +A   LLLR SEDLVC+N+ C ++G +C+C+L+L L RL +L  LDV+ N LG LP  V  L
Sbjct:    1 MIAKSLREAATHTTAVRKLLLRKSEDLVCRNLMCERVGEACVCKLSLVLERLPELTHLDVSGNKLGALPPAVAAL 75          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: T0QH27_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH27_SAPDV)

HSP 1 Score: 73.9 bits (180), Expect = 9.530e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 VIARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFELHVL 237
            +IA+SL+DAA   SA   L+LR SEDL+C N+ C ++G +C+C+L++ L RL +L  LDV+ N L  LP  +F L  L
Sbjct:    1 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSLRHL 78          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: A0A024GQG6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQG6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.300e-13
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    7 IARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFELHVL 237
            +A S + AA+ G+AT  L+L  S+DLVCKN+ C ++G +C CRLA  L+ + KL  LD+++N L  +P+ VF L  L
Sbjct:    5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSLQDL 81          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: F0WI42_9STRA (Uncharacterized protein AlNc14C107G6249 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WI42_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.420e-13
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    7 IARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFELHVLE 240
            +A S +D A+ G+    L+L+ S+DLVCKN+ C K+G +C CRLA  L+ + KL  LD+++N L  +PE VF L  L+
Sbjct:    5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGLQDLK 82          
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Match: A0A485L6B7_9STRA (Aste57867_16664 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6B7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.910e-12
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 VIARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHLSRLGKLRELDVADNGLGFLPEPVFELHVLE 240
            +I RS++DAA    A   LLLR SEDL+C+N+ C ++G +C+CR +L L +L +L +LDV+ N L  LP  +F+L  LE
Sbjct:  332 MIVRSVRDAAMHMGAVKELLLRRSEDLLCRNLMCERVGEACICRFSLVLEKLPQLTKLDVSHNNLHALPPALFQLPRLE 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LMZ4_ECTSI3.300e-4078.48Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A1V9ZV51_9STRA5.140e-1648.10Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
K3WPL3_GLOUD6.500e-1656.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A836CFY3_9STRA8.710e-1551.81Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A8K1FBU8_PYTOL9.580e-1552.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9Z9Y8_9STRA4.100e-1450.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QH27_SAPDV9.530e-1447.44Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A024GQG6_9STRA2.300e-1345.45Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WI42_9STRA2.420e-1344.87Uncharacterized protein AlNc14C107G6249 n=1 Tax=Al... [more]
A0A485L6B7_9STRA1.910e-1246.84Aste57867_16664 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3109813..3110555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog2880.D8LMZ4
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_001180.1
Exons2
Model size471
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.3338716-CDS-P-fluviatile_contig11:3109812..31100681622815476.3338716-CDS-P-fluviatile_contig11:3109812..3110068Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3109813..3110068 +
1693561988.1829908-CDS-P-fluviatile_contig11:3109812..31100681693561988.1829908-CDS-P-fluviatile_contig11:3109812..3110068Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3109813..3110068 +
1622815476.3502176-CDS-P-fluviatile_contig11:3110340..31105551622815476.3502176-CDS-P-fluviatile_contig11:3110340..3110555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3110341..3110555 +
1693561988.3954918-CDS-P-fluviatile_contig11:3110340..31105551693561988.3954918-CDS-P-fluviatile_contig11:3110340..3110555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3110341..3110555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1264.1prot_P-fluviatile_contig11.1264.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3109813..3110555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1264.1

>prot_P-fluviatile_contig11.1264.1 ID=prot_P-fluviatile_contig11.1264.1|Name=mRNA_P-fluviatile_contig11.1264.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=157bp
MVIARSLKDAARLGSATTSLLLRSSEDLVCKNIFCAKLGSSCLCRLALHL
SRLGKLRELDVADNGLGFLPEPVFELHVLEHLDVSGNDLKELPAGVGSLS
SLRTLRLSDNALAVLPKELASLPLLTEVHVGGNSGLDRAGVAEVLRKRPD
VAIVWDD
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mRNA from alignment at P-fluviatile_contig11:3109813..3110555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1264.1 ID=mRNA_P-fluviatile_contig11.1264.1|Name=mRNA_P-fluviatile_contig11.1264.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=743bp|location=Sequence derived from alignment at P-fluviatile_contig11:3109813..3110555+ (Porterinema fluviatile SAG_2381)
ATGGTGATCGCACGGAGCCTCAAGGATGCGGCGCGATTAGGCAGCGCGAC CACCTCCCTTCTGCTCAGAAGCAGCGAAGACCTGGTGTGCAAGAATATTT TTTGCGCGAAGCTCGGCAGCTCCTGCTTGTGTCGGCTGGCCTTACACCTG TCGAGACTGGGAAAGCTGAGGGAGCTCGACGTGGCCGACAATGGCCTGGG CTTCCTGCCCGAACCGGTGTTCGAGCTGCACGTCCTCGAACATCTGGACG TGAGCGGTGAGAAGCTTGAGCAGCGAAAGCGCCCGCGGCAGGAATGGATG TTCGCAGGGGAGGACGACCGCCGTGGGAAACACAAGTTTCTCGAAATGAT GTCTTCCATCTCTGTGTGCGACACCCCGTGTCTAGGGTCGGTCTCAGGCT CTCCTTGTAATGTGCTGCTACTTGGAGAGTGGATACCGAACACCTTGTTG CGTTAGGTTCCATCTGGGGTCGTTTTCCTCGAGCGTTCCGCCGACCCTCC CGATTCCAACCCACACCCGTGCGCACAGGGAACGATCTGAAGGAGCTACC CGCCGGCGTCGGATCTCTATCCAGCCTGCGTACCCTTAGGCTGTCAGATA ACGCACTTGCAGTGCTGCCGAAGGAGCTGGCCTCGCTGCCGCTGCTGACA GAAGTGCACGTAGGCGGCAACAGTGGGCTAGACAGGGCGGGAGTGGCGGA GGTGCTGCGGAAGCGGCCAGACGTCGCCATCGTGTGGGACGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3109813..3110555+

>mRNA_P-fluviatile_contig11.1264.1 ID=mRNA_P-fluviatile_contig11.1264.1|Name=mRNA_P-fluviatile_contig11.1264.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=942bp|location=Sequence derived from alignment at P-fluviatile_contig11:3109813..3110555+ (Porterinema fluviatile SAG_2381)
ATGGTGATCGCACGGAGCCTCAAGGATGCGGCGCGATTAGGCAGCGCGAC
CACCTCCCTTCTGCTCAGAAGCAGCGAAGACCTGGTGTGCAAGAATATTT
TTTGCGCGAAGCTCGGCAGCTCCTGCTTGTGTCGGCTGGCCTTACACCTG
TCGAGACTGGGAAAGCTGAGGGAGCTCGACGTGGCCGACAATGGCCTGGG
CTTCCTGCCCGAACCGGTGTTCGAGCTGCACGTCCTCGAACATCTGGACG
TGAGCGATGGTGATCGCACGGAGCCTCAAGGATGCGGCGCGATTAGGCAG
CGCGACCACCTCCCTTCTGCTCAGAAGCAGCGAAGACCTGGTGTGCAAGA
ATATTTTTTGCGCGAAGCTCGGCAGCTCCTGCTTGTGTCGGCTGGCCTTA
CACCTGTCGAGACTGGGAAAGCTGAGGGAGCTCGACGTGGCCGACAATGG
CCTGGGCTTCCTGCCCGAACCGGTGTTCGAGCTGCACGTCCTCGAACATC
TGGACGTGAGCGGGAACGATCTGAAGGAGCTACCCGCCGGCGTCGGATCT
CTATCCAGCCTGCGTACCCTTAGGCTGTCAGATAACGCACTTGCAGTGCT
GCCGAAGGAGCTGGCCTCGCTGCCGCTGCTGACAGAAGTGCACGTAGGCG
GCAACAGTGGGCTAGACAGGGCGGGAGTGGCGGAGGTGCTGCGGAAGCGG
CCAGACGTCGCCATCGTGTGGGACGACGGAACGATCTGAAGGAGCTACCC
GCCGGCGTCGGATCTCTATCCAGCCTGCGTACCCTTAGGCTGTCAGATAA
CGCACTTGCAGTGCTGCCGAAGGAGCTGGCCTCGCTGCCGCTGCTGACAG
AAGTGCACGTAGGCGGCAACAGTGGGCTAGACAGGGCGGGAGTGGCGGAG
GTGCTGCGGAAGCGGCCAGACGTCGCCATCGTGTGGGACGAC
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