mRNA_P-fluviatile_contig11.1262.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1262.1
Unique NamemRNA_P-fluviatile_contig11.1262.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1262.1 vs. uniprot
Match: A0A6H5JP88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP88_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.410e-21
Identity = 183/552 (33.15%), Postives = 225/552 (40.76%), Query Frame = 3 
Query:   66 MTEPKNLPQWTPRPCTLEDTMK-----------GGNDPDLQ----KTATTVPDHQHHVLNHHCTHPERPHRVAQSYVGESVLDMPIFRGG-----SWDGPEAEDHDVFVRPCSAVSVDIFHEEERDERMLWTAADRSKIWGRGADAKEPVRSCDADKGNGEKILKVRFAPDETAGVDSTSTASGEAPLPCLEHTT-VDT-GAEEEFYFADGQ-CFVRQRNGMHTAWRLREVGRNDKGRPSTPLAPAHIRVAATAAAPSNGTASATTTIAHQTSGARTDDSPPKSSRWTRSMSASRLISLTTSSAPQRQQQPVRLFLRRSRTSLSIASPNTECTRAPAVVEAVRRDQGIDGSGEGSRARRIAHKSGPSQAFLLPWTGRDNVCTRPSPRAGRAGPIEVGGRLLEAMITPPPRQVGSAXXXXXXXXXXXXXXXXSGAGLGHRPRRQAVRSTSPGTNXXXXXXXXXXXXXXXXXXXRATAAPLSSPAVRRNLARAARRSKVGTNADPVTLYRQRQELEQVQKK----VAATNRGKSSREGRISSG-SLSGSGKTAG 1637
            M+ P  LPQW P+    +D               G+DP  Q       T V D +       C       R A     ES L +PIFRG        DG  +     F+    A +              W + +R++   + A   EPV S      +    ++VRFAPD   G  +   A+  +P          D  G E E  FA G  CFVR RNGMHTAWR + V       P  P  P  + VAA  A P NG                                                  PVRLFLRRSR  +S      E  R  AV++  +        G  + ARR    +G  QAF LPW G  +  T    +  RA P   G    EA++     +V + XXXX            S           + R       XXXXXXXXXXXXXXXXXXX    APLSS A+R NLAR AR SKVGT ADPV LYRQRQELEQ + K    VA + R  +SREGR + G S+ G+G   G
Sbjct:    1 MSPPYRLPQWPPQSSAPQDPQHFNPPRRGDYYDNGSDPSRQLDDDDVTTLVADGRDSWKQQQC-------RPADDLADESFLGVPIFRGDVVRDTEEDGGGSNLELSFLDDDHAAAASTTMPGGERASPTWNSGNRAE---QRATTTEPVVSV-GPAVSSSTPMRVRFAPDVGDGGTALLEAAEASPSXXXXXAARADRRGDENEHVFASGSSCFVRHRNGMHTAWRRKAVV------PDNPRQPLQVTVAAARAEPPNGVIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----PVRLFLRRSRLPVSPEPAGKENVRPAAVLKETK--------GSVAGARRA---NGSQQAFPLPWGGTHSPVT--GMQLNRARPDGGGWGGREALL-----EVLTXXXXXRARPRSAQHVARSPPLTTRISPSISTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAGVARSRRKPTSREGRPTGGISVWGTGTAGG 512
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP88_9PHAE4.410e-2133.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3101844..3103947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_001200.1
Exons1
Model size2104
Cds size1626
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1262.1prot_P-fluviatile_contig11.1262.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3101909..3103534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.1636856-UTR-P-fluviatile_contig11:3101843..31019081622815476.1636856-UTR-P-fluviatile_contig11:3101843..3101908Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3101844..3101908 +
1693561988.0891194-UTR-P-fluviatile_contig11:3101843..31019081693561988.0891194-UTR-P-fluviatile_contig11:3101843..3101908Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3101844..3101908 +
1622815476.1946723-UTR-P-fluviatile_contig11:3103534..31039471622815476.1946723-UTR-P-fluviatile_contig11:3103534..3103947Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3103535..3103947 +
1693561988.1072743-UTR-P-fluviatile_contig11:3103534..31039471693561988.1072743-UTR-P-fluviatile_contig11:3103534..3103947Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3103535..3103947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.1817951-CDS-P-fluviatile_contig11:3101908..31035341622815476.1817951-CDS-P-fluviatile_contig11:3101908..3103534Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3101909..3103534 +
1693561988.0990329-CDS-P-fluviatile_contig11:3101908..31035341693561988.0990329-CDS-P-fluviatile_contig11:3101908..3103534Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3101909..3103534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1262.1

>prot_P-fluviatile_contig11.1262.1 ID=prot_P-fluviatile_contig11.1262.1|Name=mRNA_P-fluviatile_contig11.1262.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=542bp
MTEPKNLPQWTPRPCTLEDTMKGGNDPDLQKTATTVPDHQHHVLNHHCTH
PERPHRVAQSYVGESVLDMPIFRGGSWDGPEAEDHDVFVRPCSAVSVDIF
HEEERDERMLWTAADRSKIWGRGADAKEPVRSCDADKGNGEKILKVRFAP
DETAGVDSTSTASGEAPLPCLEHTTVDTGAEEEFYFADGQCFVRQRNGMH
TAWRLREVGRNDKGRPSTPLAPAHIRVAATAAAPSNGTASATTTIAHQTS
GARTDDSPPKSSRWTRSMSASRLISLTTSSAPQRQQQPVRLFLRRSRTSL
SIASPNTECTRAPAVVEAVRRDQGIDGSGEGSRARRIAHKSGPSQAFLLP
WTGRDNVCTRPSPRAGRAGPIEVGGRLLEAMITPPPRQVGSATVAAVVSN
QQQRYGGGSGAGLGHRPRRQAVRSTSPGTNNGNGRSSSSGGDENSPPPPR
ATAAPLSSPAVRRNLARAARRSKVGTNADPVTLYRQRQELEQVQKKVAAT
NRGKSSREGRISSGSLSGSGKTAGLGRARTAETVVGMAWIC*
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mRNA from alignment at P-fluviatile_contig11:3101844..3103947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1262.1 ID=mRNA_P-fluviatile_contig11.1262.1|Name=mRNA_P-fluviatile_contig11.1262.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2104bp|location=Sequence derived from alignment at P-fluviatile_contig11:3101844..3103947+ (Porterinema fluviatile SAG_2381)
CAGAAAAGCAAAGAACAACCATTTGCGCAACACGTGATACGAGGCAGAGG
GAGGGAATTTTTTTTATGACGGAACCCAAGAACCTTCCGCAGTGGACTCC
TCGGCCATGTACCCTCGAAGACACGATGAAAGGAGGGAACGACCCTGACC
TGCAGAAAACGGCGACAACTGTGCCTGATCATCAGCACCACGTTCTGAAC
CACCACTGCACACACCCAGAGCGACCGCACCGCGTTGCACAGAGTTATGT
GGGGGAGTCGGTGTTAGATATGCCAATATTCCGAGGAGGGTCATGGGATG
GGCCTGAAGCAGAGGATCATGATGTTTTTGTTAGGCCGTGCAGTGCTGTG
TCCGTTGACATTTTCCACGAGGAAGAGCGAGACGAGCGGATGCTTTGGAC
GGCTGCCGACAGAAGCAAAATCTGGGGGAGAGGAGCGGATGCGAAGGAGC
CGGTGCGTTCGTGTGACGCGGACAAAGGGAATGGCGAAAAAATCCTGAAG
GTCCGATTCGCCCCAGATGAGACGGCGGGCGTGGACTCAACATCCACCGC
TTCCGGCGAAGCGCCACTGCCGTGTCTAGAGCATACGACGGTGGATACCG
GGGCGGAGGAAGAATTTTACTTCGCGGACGGGCAGTGTTTCGTGCGGCAA
CGGAACGGCATGCACACAGCTTGGCGGCTTCGAGAAGTGGGCAGAAACGA
CAAGGGCCGCCCCTCAACCCCTCTGGCGCCGGCGCACATCAGGGTGGCGG
CGACCGCAGCAGCGCCTTCGAACGGCACTGCTTCAGCTACAACGACGATA
GCCCATCAAACCAGCGGTGCACGCACTGACGATTCTCCCCCGAAAAGTTC
ACGGTGGACCCGATCGATGAGCGCCAGCCGATTGATCTCGCTGACGACGT
CGTCTGCGCCGCAGCGACAGCAACAACCCGTGAGATTATTCCTCCGGCGA
AGCCGAACCTCCCTCTCTATTGCATCACCCAACACGGAATGTACCCGCGC
TCCCGCCGTCGTCGAAGCTGTGAGAAGAGACCAGGGTATCGACGGCTCCG
GAGAGGGATCGAGGGCGAGGCGGATCGCTCATAAATCTGGTCCCTCGCAA
GCTTTCCTGCTACCGTGGACTGGCCGCGACAACGTTTGTACGCGGCCCAG
TCCCAGAGCAGGAAGAGCGGGACCGATTGAAGTCGGGGGGCGACTTCTCG
AGGCCATGATTACGCCACCCCCCCGTCAGGTTGGCTCGGCCACAGTGGCG
GCGGTAGTCAGCAATCAGCAGCAACGGTACGGCGGCGGAAGCGGTGCAGG
GCTTGGCCACCGACCTCGTCGGCAAGCGGTACGCAGCACAAGTCCCGGGA
CCAATAACGGCAACGGGCGCAGCAGCAGCAGCGGCGGCGATGAAAACAGC
CCCCCCCCGCCCCGAGCAACGGCGGCACCCCTTTCTTCCCCGGCCGTCCG
ACGAAACCTTGCCCGTGCGGCTCGGAGGAGCAAGGTGGGCACCAACGCGG
ATCCGGTCACCCTCTACCGACAGCGACAGGAGCTCGAACAGGTACAGAAG
AAGGTCGCCGCCACGAACAGAGGCAAATCGAGCCGTGAAGGACGGATCTC
CAGCGGCTCGTTGTCGGGTTCCGGCAAGACGGCGGGGCTGGGGAGGGCAA
GGACCGCCGAAACCGTCGTCGGCATGGCGTGGATATGCTGACGATAGCAC
TGGGATCGGCGAGTGGGCACTTGGTACACTTGTGGGCAGGGTTTTCATTC
TTGGGAGGGTTTTCGTAGAAAGAGAGCGGGTCAGCGGACCGGCTTGGCTC
TGCCGTGTGCTTGCTGGTCCTGCGTGTCGTGCAGCGGATTTCGTGCGGAC
TCGTCGCCCATTCTTTGCTTTTCTTGCAGCTTCTCTACTTTTGTGTCCCC
TCGCTGATACAACCACGGCCATGATGTGTGCGTAGAAGATTGTGCTTCCT
CAGATAGGGTGGGCGAACTTTGGAAGCTTTTTTTGTACAAATTCATTTCT
TGTGGAAGTGTGAAGTCTTTGGTGCCCCACGGAGCCGATCCGCGCGTGTT
GCGTCTCGATTCGCCTGAGTTTTCGGCTGATTTGGGCGTGCTGTTGGAAT
CAAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3101844..3103947+

>mRNA_P-fluviatile_contig11.1262.1 ID=mRNA_P-fluviatile_contig11.1262.1|Name=mRNA_P-fluviatile_contig11.1262.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3252bp|location=Sequence derived from alignment at P-fluviatile_contig11:3101844..3103947+ (Porterinema fluviatile SAG_2381)
ATGACGGAACCCAAGAACCTTCCGCAGTGGACTCCTCGGCCATGTACCCT
CGAAGACACGATGAAAGGAGGGAACGACCCTGACCTGCAGAAAACGGCGA
CAACTGTGCCTGATCATCAGCACCACGTTCTGAACCACCACTGCACACAC
CCAGAGCGACCGCACCGCGTTGCACAGAGTTATGTGGGGGAGTCGGTGTT
AGATATGCCAATATTCCGAGGAGGGTCATGGGATGGGCCTGAAGCAGAGG
ATCATGATGTTTTTGTTAGGCCGTGCAGTGCTGTGTCCGTTGACATTTTC
CACGAGGAAGAGCGAGACGAGCGGATGCTTTGGACGGCTGCCGACAGAAG
CAAAATCTGGGGGAGAGGAGCGGATGCGAAGGAGCCGGTGCGTTCGTGTG
ACGCGGACAAAGGGAATGGCGAAAAAATCCTGAAGGTCCGATTCGCCCCA
GATGAGACGGCGGGCGTGGACTCAACATCCACCGCTTCCGGCGAAGCGCC
ACTGCCGTGTCTAGAGCATACGACGGTGGATACCGGGGCGGAGGAAGAAT
TTTACTTCGCGGACGGGCAGTGTTTCGTGCGGCAACGGAACGGCATGCAC
ACAGCTTGGCGGCTTCGAGAAGTGGGCAGAAACGACAAGGGCCGCCCCTC
AACCCCTCTGGCGCCGGCGCACATCAGGGTGGCGGCGACCGCAGCAGCGC
CTTCGAACGGCACTGCTTCAGCTACAACGACGATAGCCCATCAAACCAGC
GGTGCACGCACTGACGATTCTCCCCCGAAAAGTTCACGGTGGACCCGATC
GATGAGCGCCAGCCGATTGATCTCGCTGACGACGTCGTCTGCGCCGCAGC
GACAGCAACAACCCGTGAGATTATTCCTCCGGCGAAGCCGAACCTCCCTC
TCTATTGCATCACCCAACACGGAATGTACCCGCGCTCCCGCCGTCGTCGA
AGCTGTGAGAAGAGACCAGGGTATCGACGGCTCCGGAGAGGGATCGAGGG
CGAGGCGGATCGCTCATAAATCTGGTCCCTCGCAAGCTTTCCTGCTACCG
TGGACTGGCCGCGACAACGTTTGTACGCGGCCCAGTCCCAGAGCAGGAAG
AGCGGGACCGATTGAAGTCGGGGGGCGACTTCTCGAGGCCATGATTACGC
CACCCCCCCGTCAGGTTGGCTCGGCCACAGTGGCGGCGGTAGTCAGCAAT
CAGCAGCAACGGTACGGCGGCGGAAGCGGTGCAGGGCTTGGCCACCGACC
TCGTCGGCAAGCGGTACGCAGCACAAGTCCCGGGACCAATAACGGCAACG
GGCGCAGCAGCAGCAGCGGCGGCGATGAAAACAGCCCCCCCCCGCCCCGA
GCAACGGCGGCACCCCTTTCTTCCCCGGCCGTCCGACGAAACCTTGCCCG
TGCGGCTCGGAGGAGCAAGGTGGGCACCAACGCGGATCCGGTCACCCTCT
ACCGACAGCGACAGGAGCTCGAACAGGTACAGAAGAAGGTCGCCGCCACG
AACAGAGGCAAATCGAGCCGTGAAGGACGGATCTCCAGCGGCTCGTTGTC
GGGTTCCGGCAAGACGGCGGGGCTGGGGAGGGCAAGGACCGCCGAAACCG
TCGTCGGCATGGCGTGGATATGCTGAATGACGGAACCCAAGAACCTTCCG
CAGTGGACTCCTCGGCCATGTACCCTCGAAGACACGATGAAAGGAGGGAA
CGACCCTGACCTGCAGAAAACGGCGACAACTGTGCCTGATCATCAGCACC
ACGTTCTGAACCACCACTGCACACACCCAGAGCGACCGCACCGCGTTGCA
CAGAGTTATGTGGGGGAGTCGGTGTTAGATATGCCAATATTCCGAGGAGG
GTCATGGGATGGGCCTGAAGCAGAGGATCATGATGTTTTTGTTAGGCCGT
GCAGTGCTGTGTCCGTTGACATTTTCCACGAGGAAGAGCGAGACGAGCGG
ATGCTTTGGACGGCTGCCGACAGAAGCAAAATCTGGGGGAGAGGAGCGGA
TGCGAAGGAGCCGGTGCGTTCGTGTGACGCGGACAAAGGGAATGGCGAAA
AAATCCTGAAGGTCCGATTCGCCCCAGATGAGACGGCGGGCGTGGACTCA
ACATCCACCGCTTCCGGCGAAGCGCCACTGCCGTGTCTAGAGCATACGAC
GGTGGATACCGGGGCGGAGGAAGAATTTTACTTCGCGGACGGGCAGTGTT
TCGTGCGGCAACGGAACGGCATGCACACAGCTTGGCGGCTTCGAGAAGTG
GGCAGAAACGACAAGGGCCGCCCCTCAACCCCTCTGGCGCCGGCGCACAT
CAGGGTGGCGGCGACCGCAGCAGCGCCTTCGAACGGCACTGCTTCAGCTA
CAACGACGATAGCCCATCAAACCAGCGGTGCACGCACTGACGATTCTCCC
CCGAAAAGTTCACGGTGGACCCGATCGATGAGCGCCAGCCGATTGATCTC
GCTGACGACGTCGTCTGCGCCGCAGCGACAGCAACAACCCGTGAGATTAT
TCCTCCGGCGAAGCCGAACCTCCCTCTCTATTGCATCACCCAACACGGAA
TGTACCCGCGCTCCCGCCGTCGTCGAAGCTGTGAGAAGAGACCAGGGTAT
CGACGGCTCCGGAGAGGGATCGAGGGCGAGGCGGATCGCTCATAAATCTG
GTCCCTCGCAAGCTTTCCTGCTACCGTGGACTGGCCGCGACAACGTTTGT
ACGCGGCCCAGTCCCAGAGCAGGAAGAGCGGGACCGATTGAAGTCGGGGG
GCGACTTCTCGAGGCCATGATTACGCCACCCCCCCGTCAGGTTGGCTCGG
CCACAGTGGCGGCGGTAGTCAGCAATCAGCAGCAACGGTACGGCGGCGGA
AGCGGTGCAGGGCTTGGCCACCGACCTCGTCGGCAAGCGGTACGCAGCAC
AAGTCCCGGGACCAATAACGGCAACGGGCGCAGCAGCAGCAGCGGCGGCG
ATGAAAACAGCCCCCCCCCGCCCCGAGCAACGGCGGCACCCCTTTCTTCC
CCGGCCGTCCGACGAAACCTTGCCCGTGCGGCTCGGAGGAGCAAGGTGGG
CACCAACGCGGATCCGGTCACCCTCTACCGACAGCGACAGGAGCTCGAAC
AGGTACAGAAGAAGGTCGCCGCCACGAACAGAGGCAAATCGAGCCGTGAA
GGACGGATCTCCAGCGGCTCGTTGTCGGGTTCCGGCAAGACGGCGGGGCT
GGGGAGGGCAAGGACCGCCGAAACCGTCGTCGGCATGGCGTGGATATGCT
GA
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