mRNA_P-fluviatile_contig11.1242.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: D8LKH1_ECTSI (Uracil-DNA glycosylase superfamily protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH1_ECTSI) HSP 1 Score: 450 bits (1157), Expect = 3.650e-153 Identity = 221/277 (79.78%), Postives = 242/277 (87.36%), Query Frame = 2
Query: 188 ETAAAAGESSTASPVASGDDLVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVKWEKATCFDELVLKSSKSKEIDRFI 1018
E +A E+ ++ V+ GD+LVRISRRLHD LKD+ W+GTSKQPV+CSYNVLEYASETNE YTQRYGGGRP GRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWL VQG VGRP KEH KRPV GF+C+RSEVSGTRLWGFFERRF TADAW DK+FVYN+CPL FMSSSGGNITPDKL PAER+VID+AC +ALA+M+S L+PSVVVAVGNFAGSKC EAVKASGL A G VVVVNHPSPASPTGVKWEKATC +ELVL SSKSKEIDRF+
Sbjct: 42 EGGSAGAEAGGSTLVSCGDELVRISRRLHDSLKDRKWKGTSKQPVSCSYNVLEYASETNEAYTQRYGGGRPFGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLKVQGAVGRPSKEHTKRPVHGFDCQRSEVSGTRLWGFFERRFGTADAWGDKMFVYNFCPLTFMSSSGGNITPDKLTPAEREVIDEACGEALAEMISALKPSVVVAVGNFAGSKCHEAVKASGLNAAG--KGEVEVVVVNHPSPASPTGVKWEKATCLNELVLNSSKSKEIDRFL 316
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: A0A3N5VL41_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A3N5VL41_9BACT) HSP 1 Score: 221 bits (564), Expect = 3.250e-65 Identity = 119/244 (48.77%), Postives = 152/244 (62.30%), Query Frame = 2
Query: 230 VASGDDLVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVK-WEKA 958
+++ DL+ +RRL D L D T PV C Y L+YA ++ Y +RYG G R +GMNPGP+GM QTGVPFGEV VRDWL + V +P EH KRPV+GFNC RSEVSG RLWG F RF TADA+ FV NYCPL +MS++G N+TPDKL AE ++DACL LA+++ L+PS ++ +G FA + L A + SG A GR + HPSPASP + W +A
Sbjct: 1 MSAATDLIASTRRLCDALGDL----TFAAPVACVYRPLQYAWRPHQRYLERYGRGPK--RVVFLGMNPGPFGMAQTGVPFGEVAAVRDWLEIHEPVDKPAGEHPKRPVEGFNCTRSEVSGRRLWGLFAERFGTADAFFKDHFVLNYCPLVWMSATGANLTPDKLPAAEMAPVEDACLAHLAEVIGLLKPSFLIGIGGFAEQRLLRAAETSGSKAAIGR--------ILHPSPASPAANRGWAEA 230
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: UPI0019034DE8 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI0019034DE8) HSP 1 Score: 212 bits (540), Expect = 1.170e-61 Identity = 111/238 (46.64%), Postives = 153/238 (64.29%), Query Frame = 2
Query: 248 LVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVK-WEKA 958
L++ +R L D+L+D + PV +Y LEYA + +E Y +++G G+ R +GMNPGP+GM QTGVPFGE+ V+DW+G+QGEVG+P EH KRP++GF C+RSEVSG RLWG F+ RF TADA+ + FV NYCPL +MS++G N+TPDK+A A ++ ACL LA + L+P ++ VG FA + A + G A G+ V HPSPASP + W +A
Sbjct: 7 LIKAARVLTDELRDLEFPA----PVAYTYLPLEYAWKPHEDYLKKFGSGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVKDWMGIQGEVGKPAHEHPKRPIEGFACQRSEVSGRRLWGLFQDRFGTADAFFEDHFVTNYCPLVWMSATGANLTPDKIAAASMVEVEGACLRHLASTILALQPEFLIGVGAFAEQRIRTAAETVGSKASIGK--------VLHPSPASPAANRGWAEA 230
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: A0A2A2QJU9_9BACT (Single-stranded DNA-binding protein n=1 Tax=Verrucomicrobiae bacterium Tous-C5FEB TaxID=1982331 RepID=A0A2A2QJU9_9BACT) HSP 1 Score: 212 bits (539), Expect = 1.450e-61 Identity = 110/214 (51.40%), Postives = 139/214 (64.95%), Query Frame = 2
Query: 320 VTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVK-WEKA 958
V C YN LEYA + +E Y RYG G+ R +GMNPGP+GM QTGVPFGEV VRDWLG+ +V +P KEH KRP++GF CKRSEVSG RLWG F RF AD++ + FV NYCPL +MS++G N+TPDKL +E + ++ ACL LA ++ L PS ++ VG FA + + A A G A GR V HPSPASP + W +A
Sbjct: 24 VACVYNPLEYAWQAHEAYLSRYGSGKK--RVLFLGMNPGPFGMAQTGVPFGEVDAVRDWLGICEDVEKPLKEHPKRPIEGFACKRSEVSGRRLWGLFAERFGKADSFFKEHFVMNYCPLVWMSTTGANLTPDKLPASEMQPVEQACLKHLAKVIELLDPSYLIGVGGFAEDRLIRAAAACGSKATVGR--------VLHPSPASPAANRGWAEA 227
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: A0A2W4L8P9_9PROT (Single-stranded DNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L8P9_9PROT) HSP 1 Score: 209 bits (533), Expect = 1.040e-60 Identity = 114/231 (49.35%), Postives = 144/231 (62.34%), Query Frame = 2
Query: 242 DDLVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASP 934
DDLVR R L PVT YN L+YA E +E Y +RYG GR A +GMNPGP+GM QTGVPFGEV VRDWL ++G+VG+P EH KRPV GF+C RSEVSG+R+WG+ F T + + ++ FV NYCPL FM +SG N+TPDKL AER+ + AC AL MM +P V+ VGNFA ++ EA++ +G+ G + HPSPASP
Sbjct: 7 DDLVRELRPLR-----------FGPPVTHVYNPLQYAREPHERYLERYGQGRK--EAVFLGMNPGPFGMAQTGVPFGEVRIVRDWLKIEGKVGKPPVEHPKRPVQGFDCPRSEVSGSRIWGWVRDTFGTPERFFERFFVANYCPLVFMEASGRNLTPDKLPRAEREPLFAACDRALRRMMEIWQPRWVIGVGNFAEARAREALEGTGISVGR----------ILHPSPASP 214
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: A0A3N5QI00_9GAMM (Single-strand selective monofunctional uracil-DNA glycosylase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5QI00_9GAMM) HSP 1 Score: 209 bits (532), Expect = 1.460e-60 Identity = 108/229 (47.16%), Postives = 142/229 (62.01%), Query Frame = 2
Query: 248 LVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASP 934
LV +SR L +++ + PV C YN LEYA +E Y RYGGG ++GMNPGP+GM QTGVPFG+V VRDWLG+ V RPR EH KRPV GF+C R+E+SGTRLWG+ RF T + ++ FV NYCPLAF+++SG N+TPDKL AE++ + AC +AL ++ LRP +V+ VG FA + A+ + G + HPSPASP
Sbjct: 3 LVDVSRALSERVASLRFA----DPVCCVYNPLEYARAPHELYLSRYGGGPK--EVLLLGMNPGPFGMAQTGVPFGDVTMVRDWLGIVAPVARPRDEHPKRPVLGFDCHRTEISGTRLWGWARDRFGTPQRFFERFFVANYCPLAFVAASGANLTPDKLPAAEQRAVSSACDEALRAVVRLLRPQIVIGVGGFAERRARAALGGENIAIG----------TILHPSPASP 215
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: A0A2I6QL86_9BACT (Uracil-DNA glycosylase family 3 n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A2I6QL86_9BACT) HSP 1 Score: 209 bits (531), Expect = 2.250e-60 Identity = 117/238 (49.16%), Postives = 147/238 (61.76%), Query Frame = 2
Query: 251 VRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVK-WEKAT 961
VRISR L ++ + + +PV C YN L YA+ +E Y +RY G A +GMNPGP+GM QTGVPFGEV VRDWL V+GEVG P H RPV GF C RSEVSG RLWG+ + RFVT + + + FV+NYCPL FM SG N+TPDKL+ A+R+ + AC AL +++ LRP V+V VGNFA EA + L G+ G + HPSPASP + W AT
Sbjct: 6 VRISRELSCAVR----KMSFDEPVACVYNPLHYAAAPHEDYLRRYANGEK--EALFLGMNPGPFGMAQTGVPFGEVAHVRDWLDVRGEVGAPEPLHPARPVHGFACARSEVSGARLWGWAKTRFVTPERFFARFFVHNYCPLCFMEDSGRNLTPDKLSAAQREALFRACDKALRELVMLLRPKVLVGVGNFA-----EARFRAALPEFRGKIGR-----IPHPSPASPAANRGWAAAT 227
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: A0A6N6PAS5_9BACT (Single-stranded DNA-binding protein n=2 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A6N6PAS5_9BACT) HSP 1 Score: 209 bits (531), Expect = 2.320e-60 Identity = 114/241 (47.30%), Postives = 153/241 (63.49%), Query Frame = 2
Query: 242 DDLVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRF-VTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVK-WEKA 958
+DL++ +R+L D L+ + PV Y L+YA + ++ Y QR+G G R +GMNPGP+GM QTGVPFGE+ VRDW+G+Q V +P EH KRP+DGF C+RSEVSG RLWG F R + AD +AD FV N+CPL +MS+SG N+TPDKLA A+ + ++DACL L +++ LRPS ++ VG FA ++ A A G A GR V HPSPASP + W +A
Sbjct: 2 NDLIQSTRKLADALRGLEF----SPPVAQVYRPLDYAWQPHQVYLQRFGSGPK--RVLFLGMNPGPFGMAQTGVPFGEIAAVRDWMGIQAAVAKPPCEHPKRPIDGFACQRSEVSGQRLWGLFAARHPLAADFFADH-FVQNFCPLVWMSASGANLTPDKLAAADMQPVEDACLTHLTEVIELLRPSYLIGVGGFAEARLRLAAAACGSSAAIGR--------VLHPSPASPAANRGWAEA 227
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: A0A4V1SDI5_9BACT (Single-strand selective monofunctional uracil-DNA glycosylase n=2 Tax=Verrucomicrobiaceae TaxID=203557 RepID=A0A4V1SDI5_9BACT) HSP 1 Score: 207 bits (526), Expect = 1.220e-59 Identity = 109/239 (45.61%), Postives = 150/239 (62.76%), Query Frame = 2
Query: 245 DLVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVK-WEKA 958
+L+ + RL + L++ + PV Y L+Y E + Y +R+G G+ + +GMNPGP+GM QTGVPFGEV VRDW+G++ VG+P EH KRP++GF C+RSEVSG RLWG F RF TADA+ FV NYCPL +MSS+G N+TPDKL+ AE ++ AC L ++++ L+PS ++ VG FA + A ++SG A GR V HPSPASP + W +A
Sbjct: 3 ELIASTGRLAEDLRELEF----SPPVAHVYRTLDYTWEAHRKYLERFGKGKK--KVVFLGMNPGPFGMAQTGVPFGEVAAVRDWMGIEASVGKPPHEHPKRPIEGFACQRSEVSGRRLWGLFSERFGTADAFFKDHFVLNYCPLVWMSSTGANLTPDKLSAAEMAPVEAACQKHLQEVIALLKPSWLIGVGGFAEERLRRAAESSGSKARIGR--------VLHPSPASPAANRGWAEA 227
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Match: UPI001B8AC5B4 (single-stranded DNA-binding protein n=1 Tax=Luteolibacter ambystomatis TaxID=2824561 RepID=UPI001B8AC5B4) HSP 1 Score: 207 bits (526), Expect = 1.350e-59 Identity = 113/238 (47.48%), Postives = 149/238 (62.61%), Query Frame = 2
Query: 248 LVRISRRLHDQLKDKVWRGTSKQPVTCSYNVLEYASETNETYTQRYGGGRPLGRAFVVGMNPGPWGMVQTGVPFGEVGFVRDWLGVQGEVGRPRKEHAKRPVDGFNCKRSEVSGTRLWGFFERRFVTADAWADKIFVYNYCPLAFMSSSGGNITPDKLAPAERKVIDDACLDALADMMSTLRPSVVVAVGNFAGSKCLEAVKASGLGAGEGRSGAPNVVVVNHPSPASPTGVK-WEKA 958
L+ SRRL L + PV+ +YN LEYA +E Y +YG G+ R +GMNPGP+GM QTGVPFGE+ VRDW+G++ VG+P EH KRP++GF C +SEVSG RLWG F RF TA+A+ FV NYCPL +MSS+G N+TPDKL+ AE + ++ ACL LA+++ L+P +V VG FA + A +G GE + G V HPSPASP + W +A
Sbjct: 6 LIDSSRRLESALHGARF----SPPVSHAYNPLEYARVPHELYLSKYGKGKK--RVLFLGMNPGPFGMAQTGVPFGEIAAVRDWMGIEAPVGKPVPEHLKRPIEGFACPKSEVSGRRLWGLFAERFGTAEAFFKDHFVANYCPLVWMSSTGANLTPDKLSSAEMEPVEQACLAHLAEVIGILQPEWLVGVGAFAEERLRRAAAKAG---GEFKIGR-----VLHPSPASPAANRGWSEA 229 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig11.1242.1 >prot_P-fluviatile_contig11.1242.1 ID=prot_P-fluviatile_contig11.1242.1|Name=mRNA_P-fluviatile_contig11.1242.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=334bp MKLSLLGALSTVSLCTPAAGLAVTRSISFAAMVPSSKRTRRRGEDVLEMSback to top mRNA from alignment at P-fluviatile_contig11:2867931..2873890- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig11.1242.1 ID=mRNA_P-fluviatile_contig11.1242.1|Name=mRNA_P-fluviatile_contig11.1242.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5960bp|location=Sequence derived from alignment at P-fluviatile_contig11:2867931..2873890- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig11:2867931..2873890- >mRNA_P-fluviatile_contig11.1242.1 ID=mRNA_P-fluviatile_contig11.1242.1|Name=mRNA_P-fluviatile_contig11.1242.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2004bp|location=Sequence derived from alignment at P-fluviatile_contig11:2867931..2873890- (Porterinema fluviatile SAG_2381)back to top |