prot_P-fluviatile_contig6.12485.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig6.12485.1
Unique Nameprot_P-fluviatile_contig6.12485.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length344
Homology
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BLAST of mRNA_P-fluviatile_contig6.12485.1 vs. uniprot
Match: D8LL59_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL59_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.560e-25
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 0 
Query:  133 DFLIPACQSCVRGGDVEFSPPSSPSSNGETTVKNQLLKKLLRHDLSGCFRAPVDVAVNKGYLGKVGRDGMMDLGTMLARLKAGKYERQRGRNVFYADLERVWQNCRRFAGYDLSGKP 249
            D  I  C  C RG D EF+PP    +       + LL +LLRHDLS CFR PVD+  +  Y+  +GR+ MMDLGTML++L+  +Y R+RG   F  DL R+W+NCRRFAG D  G+P
Sbjct:  396 DISIARCPECFRGKDNEFAPPPPGGA-----PMDHLLSELLRHDLSLCFREPVDIVKHPDYVESIGRNAMMDLGTMLSKLQGKRYPRRRGPGQFQEDLNRIWRNCRRFAGCDELGRP 507
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BLAST of mRNA_P-fluviatile_contig6.12485.1 vs. uniprot
Match: D7G8L6_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L6_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.680e-18
Identity = 57/129 (44.19%), Postives = 70/129 (54.26%), Query Frame = 0 
Query:  119 KLAGRHNGV---EAIASDFLIPACQSCVRGGDVEFSPPSSPSSNGETTVKNQLLKKLLRHDLSGCFRAPVDVAVNKGYLGKVGRDGMMDLGTMLARL-KAGKYERQRGRNVFYADLERVWQNCRRFAGY 243
            K AGR          A D ++P  +   +  D EF  P           +  LLK LLRHDLS  FR PVDV  N GYLG V R+ MMDLGTM  RL K  +Y+  RG+  F  DLE++W NC ++AGY
Sbjct:  115 KCAGREGETVPKTKYADDVVLPLHKCLCQTKDSEFPEPKKGKD-----PQAHLLKHLLRHDLSVMFREPVDVETNPGYLGVVTREDMMDLGTMKRRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGY 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12485.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL59_ECTSI2.560e-2548.72Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
D7G8L6_ECTSI2.680e-1844.19Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 167..242
e-value: 1.1E-9
score: 38.2
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 155..259
e-value: 2.5E-12
score: 48.6
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 152..241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:1633103..1634134 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12485.1mRNA_P-fluviatile_contig6.12485.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig6 1633103..1634135 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig6.12485.1 ID=prot_P-fluviatile_contig6.12485.1|Name=mRNA_P-fluviatile_contig6.12485.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=344bp
VDTAARECHTTVCADCDKPPLVDEPVGLCLLCPRIFCSACFGESSSHNSG
NNNSSADGDSGGYEDEGDTGDEADDNEGEGNSSGTQSDSSGESANAFWRG
LASQKKRSSPPSACSRPSKLAGRHNGVEAIASDFLIPACQSCVRGGDVEF
SPPSSPSSNGETTVKNQLLKKLLRHDLSGCFRAPVDVAVNKGYLGKVGRD
GMMDLGTMLARLKAGKYERQRGRNVFYADLERVWQNCRRFAGYDLSGKPK
TLPQVPSSDGPNNSKKGQDRDKGDNGRAKETDPTLSEGAPAGGRGCRAEG
PEDDDVAVPGIVRCAFLLERMSKKFVLDHMSADDLPPSWHEPSW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf