mRNA_P-fluviatile_contig11.1237.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1237.1
Unique NamemRNA_P-fluviatile_contig11.1237.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1237.1 vs. uniprot
Match: D8LKG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG3_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 2.220e-56
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = 1 
Query:    1 YQESDWGVHAKRGGGICAATALGLTLLWFIWLHWLWAFLTLAIALFLASFETPSVYRFIEPCRRLEDILNETLKFSMPAVRAVLYVVLAVVCFWSSSLNIVLGVLLLLTAILYVFAQIVGAALTDGTSVPSDA-PADGQTPFGTFT 435
            + ESDWG+HAKRGG IC AT+L  T++ FI+  W  A L+LAI L LA+FE P VY+  EPCRRLE ILN+TLKFS+PAVRAVLY+ LA+V F S+ LNIVLGVLLLLTAILY FAQIVG+A+TD T+VPSDA PADGQTPFGTFT
Sbjct:    6 FMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 151
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG3_ECTSI2.220e-5671.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2837799..2840597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTVP18/Calcium channel flower
Ec32 orthologEc-16_002860.1
Exons4
Model size1685
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1237.1prot_P-fluviatile_contig11.1237.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2839046..2839921 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815472.1637666-UTR-P-fluviatile_contig11:2837798..28390451622815472.1637666-UTR-P-fluviatile_contig11:2837798..2839045Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2837799..2839045 -
1693561955.667433-UTR-P-fluviatile_contig11:2837798..28390451693561955.667433-UTR-P-fluviatile_contig11:2837798..2839045Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2837799..2839045 -
1622815472.2441323-UTR-P-fluviatile_contig11:2839921..28399691622815472.2441323-UTR-P-fluviatile_contig11:2839921..2839969Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2839922..2839969 -
1693561955.70317-UTR-P-fluviatile_contig11:2839921..28399691693561955.70317-UTR-P-fluviatile_contig11:2839921..2839969Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2839922..2839969 -
1622815472.2567687-UTR-P-fluviatile_contig11:2840417..28405971622815472.2567687-UTR-P-fluviatile_contig11:2840417..2840597Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2840418..2840597 -
1693561955.7147734-UTR-P-fluviatile_contig11:2840417..28405971693561955.7147734-UTR-P-fluviatile_contig11:2840417..2840597Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 2840418..2840597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815472.211388-CDS-P-fluviatile_contig11:2839045..28391321622815472.211388-CDS-P-fluviatile_contig11:2839045..2839132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2839046..2839132 -
1693561955.6753988-CDS-P-fluviatile_contig11:2839045..28391321693561955.6753988-CDS-P-fluviatile_contig11:2839045..2839132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2839046..2839132 -
1622815472.2212782-CDS-P-fluviatile_contig11:2839446..28395001622815472.2212782-CDS-P-fluviatile_contig11:2839446..2839500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2839447..2839500 -
1693561955.6840496-CDS-P-fluviatile_contig11:2839446..28395001693561955.6840496-CDS-P-fluviatile_contig11:2839446..2839500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2839447..2839500 -
1622815472.2331276-CDS-P-fluviatile_contig11:2839852..28399211622815472.2331276-CDS-P-fluviatile_contig11:2839852..2839921Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2839853..2839921 -
1693561955.692219-CDS-P-fluviatile_contig11:2839852..28399211693561955.692219-CDS-P-fluviatile_contig11:2839852..2839921Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2839853..2839921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1237.1

>prot_P-fluviatile_contig11.1237.1 ID=prot_P-fluviatile_contig11.1237.1|Name=mRNA_P-fluviatile_contig11.1237.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=70bp
MPAVRAVLYVVLAVVCFWSSSLNIVLGVLLLLTAILYVFAQIVGAALTDG
TSVPSDAPADGQTPFGTFT*
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mRNA from alignment at P-fluviatile_contig11:2837799..2840597-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1237.1 ID=mRNA_P-fluviatile_contig11.1237.1|Name=mRNA_P-fluviatile_contig11.1237.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2799bp|location=Sequence derived from alignment at P-fluviatile_contig11:2837799..2840597- (Porterinema fluviatile SAG_2381)
TACCAGGAGTCAGACTGGGGCGTCCACGCCAAGCGAGGCGGGGGCATATG
CGCCGCCACCGCGCTGGGGCTGACGTTGCTGTGGTTCATCTGGCTGCACT
GGCTCTGGGCGTTCCTTACGCTGGCGATCGCTCTGTTTCTGGCTTCCTTC
GAAACGCCTTCCGTGTACAGATTCATCGAGGTAGGCGAGCACATGGACTT
CGCACGCCTGCCCTCGCATGCAAGCGTACCCTTGATCGCAGATAAGGGGA
AGATGATAAAGAGCGTGCTGTGTACCCATCGATGTGCCGCCCGCAAGAGG
CAAAGGCGCCTTGTTGCTAATTTTTTTTCCAGGTGTGAAAATGCATGATC
AGATCGCCTTGGTACAAATTTTCAAGAGGTGCTGGGCAGACAAGGCAAAG
CTTTTGCCACGTTCAACGCAATGTTCGCAACGAACACAGGTGTCTACAGC
ATCATCGCCACCGTAGGATGTCCTACTACCGCGAGCGGTGCTCATCGAAA
GCCACCCTGAACATGCAAAGTTTGAGCCAGGAGCTAGACCCCTCCTTTGC
CAGGAAACGAGCCGACGTTTATTGCACTGATCCTCCTCAAACCCCTCCTT
CTGTCTTGCCGCCGGTCGCCCGACAAAGCCATGCCGACGTCTCGAGGATA
TCCTGAACGAAACCCTCAAGTTCAGCATGCCGGCCGTCCGCGCCGTCTTG
TACGTAGTCCTCGCCGTGGTCTGCTTCTGGTCCAGCTCGCTCAACGTGAG
CGCTTTGACCGCATCCGTCCCTTGTTTTTTTGCATTTCCTGTACCGCGCC
TTTGTTCACGGCCTACTCGCCGACACAAGAGACGGTGGGGGGCTACCCTC
ATATGCTTAGTCATGCACGCGTTCCAGAAAAGCATGTATTTCGGTAAATG
GAAGCAGCTGTATTGGATTGCCCCGTCCCCCCGTGTACTTTGGTTTGGTT
CGGAAAGCCTGAAAGAACGCGATTCGAACGTGTTAGATTCAATTTTGTTC
AGCTTCTTCGTTGCGTTCCTAATATTTTGATGTGTTGACGATGTCGTGTT
TACTGCCGTCCGGTTGGTGTGCATCCATCGCGTTCCACTCACTCCAGATC
GTGCTTGGGGTCCTGTTGCTGCTTACGGCGATACTCTACGTCTTCGCACA
GGTGAGGACGTGCCGCCTCACCAGCGCGCCGCTTTTCGCCGCGTGTTACT
TCTGTTTTGCGGGTAGATTCACCAGCGGCGATAGTCTGTTGGACTCACCT
CATCTTTGGACCATATTCGTAGAAACATATGCACCTACGTTGCGCGTTTC
CCCCCACGCCGACGTGCGACGTGAGCGTTACTTTCGTTTCACGATATGGT
CTCCTCGCTCCTCCCATCTCTTGCTGGGCGTCGTCGACCCCACCGTGTCT
CCGTGTCTCGTTTCGTTGCTGCCGCCCAACCTCAACCTCGTTGCTCGCGA
CGTACCCTTTGTTAGATCGTGGGGGCAGCGTTGACAGATGGTACTTCCGT
ACCATCAGACGCGCCAGCCGACGGACAAACACCCTTCGGAACTTTCACAT
GATCGCCCTATCATGTATTTCCGTACGGATCGATCGACTCGAGCGGCACA
CGACACTTCGATGGTGTGACGCGTGGAACCTCCCACCGGAAAAACAAGGG
TACGCCCGAGGCTTGAGCATTTACTCATGTTTCGATGTGCCTGCCGTCCG
GGTTGCAAGATCTCTTGCCTTGAGAGCGCGTGCGGAACGCGATCCGCCGA
GCCTTGCTCGCGTTCGGCGTACAAGGTAGCAACCTGGATTCGGGGCATGT
TGCGGTGGAACTTTCCGAGTCACCGAAACGGGTTGCAGCCTTTCGCCTTG
AGAGTGCCAGCAGGCAAAGTGAGGTCGTGTGGCGTCGACAAGTGCAACCT
TCTTTGTGTTTTTCGCAGGGTTTTCCAGCTTTGGCATCGGGACCACGCGG
GACGAAAGACTGCCTTTCGCGCACCTCGACCTGCTGCCGACTCGGGAGAG
ATCGGGTTTCACTCGATCGTGTCTGTCGCTCTTCAGCGGCGCCCAAGAAT
GGGAGAGCCGCCGTCTGGGGGCGCAGATATCGACGCGTATTTCTGTCTCT
TGCGGAAACTTTGCCCTATCTCGTTGTATCGTCTTCCTGCAACTGCCTAG
AGGAAATGGGGGGTAAAGCACAATACCCGTCGTCCATGGGATGGAGGCTT
TGGTTCGCAAGAGTCACTAGGTAATGAGTGCGTCTGGGGCATCCTTCGAG
GTTGGCGAAAGTTCTTTGTTTGCCTGAACCTCGTCGGTAGGCCTTGGGGA
CGGGGCGAGGTTTTTCTCCGCCGAGCAGGATGCTGCTACTTCTACTGCGG
TGGTTCCTTTTTGGTTCTAGAGGCGATCAATTTCAACGTGTGCCGGTGGC
CTTCGTGCGTTTGCGGCCCTTCTTCTAGCTGACGGAAGAGAGTAGCTCGC
CGGCAGTACAACCACACTCCTTGTCTTGCAAGCTATACACGGGGGCAATG
TGTAGTCAACATTGGTCAAAGTTTCCAACGGCCGCCGACCCCAGTCGCGT
GCGCCGATGCTGGAACGGATGTTTGGACAAGAGCTTAGGTCTGAAGCAGC
TGGAGCCCGGAGCAACTTTGACACAACAGGACGAGCTAGGAGTACATGTT
TAACGTGCCTGAGAAATAAATCTCAGAGGGCGAACTTCGAGGAAGGTGCA
TCTTGACCGTTAGCCGCATTGGCATGAGGAGCGACCCCCGCGAAGTGCAG
ACTTTGGTGCGAATTGCATAGCGCTTGCCTCGGCGACTTCCGATCCGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2837799..2840597-

>mRNA_P-fluviatile_contig11.1237.1 ID=mRNA_P-fluviatile_contig11.1237.1|Name=mRNA_P-fluviatile_contig11.1237.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=420bp|location=Sequence derived from alignment at P-fluviatile_contig11:2837799..2840597- (Porterinema fluviatile SAG_2381)
ATGCCGGCCGTCCGCGCCGTCTTGTACGTAGTCCTCGCCGTGGTCTGCTT
CTGGTCCAGCTCGCTCAACATGCCGGCCGTCCGCGCCGTCTTGTACGTAG
TCCTCGCCGTGGTCTGCTTCTGGTCCAGCTCGCTCAACATCGTGCTTGGG
GTCCTGTTGCTGCTTACGGCGATACTCTACGTCTTCGCACAGATCGTGCT
TGGGGTCCTGTTGCTGCTTACGGCGATACTCTACGTCTTCGCACAGATCG
TGGGGGCAGCGTTGACAGATGGTACTTCCGTACCATCAGACGCGCCAGCC
GACGGACAAACACCCTTCGGAACTTTCACATGAATCGTGGGGGCAGCGTT
GACAGATGGTACTTCCGTACCATCAGACGCGCCAGCCGACGGACAAACAC
CCTTCGGAACTTTCACATGA
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