mRNA_P-fluviatile_contig11.1235.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig11.1235.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI) HSP 1 Score: 842 bits (2176), Expect = 3.840e-283 Identity = 524/796 (65.83%), Postives = 580/796 (72.86%), Query Frame = 1
Query: 34 SSDEDFWAAVAAQAAQEGSSTTPAWRQVGVALPSSSAAVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEATGVCCALCEDKKEGRWVTRCKGPGXXXXXXXXXXXXXXXXXXXXXXXXXXACSIWVHPACAWQASWXXXXXXXXXXXXXXXXXNRERRLPIVFFACPQHDKPATYCSCKREEGEDEDGAEDYIECESCSEWYHFSCEGLDEENPPDIYSCKRCRQLAAKGQKVPAQERRRNKAKTNAYLSEMLANRVMQIQQWVKEVKVLAATDATTAAHASDVEGXXXXXXXXQARYASLKELLARREELEAPLEDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSD--------AGDEDDNKVVHGMEGVYSEASALLEAVADESDKAEVAVDAWFDDHPEAYYQKSDDGARLGYWKTSKAPLEAEVGRLEALVARARSARAGXXXXXXXXXXXXXXXRWALKAVGLLFTGGGGSXXXXXXXXXXAVGVGGRKPAFAEVSALLDNAEEAMTTSADRRGRANSAWQHVNDIRNMARQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAIPVDMSEYHELDKVASQWEAWEARALRCAASLEAIPLEELAETVTACPASSPNSXXXXXXXXXXXXXXEEAAALLREAESFPYGIKTSAKDALTRGLGRRGWAQRASAVLSFGAVGIARPSVALTQSLMTEAGKLGLLRASAGAAGDAAATSPLVDKIRRLAEGEGPAQRARELLKAASDGGLSETSTDSELCEAEGVLDSLRSTPVVYPEEEAL 2397
SSDEDFWAAVAAQ A+EGSSTTPAWRQVGVA P+S ++ S EA GVCCALCEDK EGRWVTRCKG G C+IWVHPACAWQ +RRLP VFFACP HDKPATYCSCKREEGEDEDG EDYIECESC+EWYHFSCEGLDE+NPP+ YSCKRCRQLAAKGQKVPAQERRRNKAKTN YLSEMLAN+VMQIQQWVKEVKVLAAT+ TA XXXXXXXX ARYAS+K+LLARREELEAPLE XXXXXXXXXXXXXXXXXXXXXXXXXXXX AGDE+D KVVHGM GVY+EASALLE+VA+ESD+AE AVD WFD+HPE YY+KSD GARLGYWKTS +PLEAEVG+LE LVA ARSARAG RW LKAV +L TGG G A G+ PAF+EVSALLDNA EAM TSADRRGRAN+AWQHVNDIR+MA QWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDA+PVDM EYHEL++VA++WEAWE+RALRCAA+LEA+PLE+LA T+T C + P E+A+ LL+EA +F +GIKTSAKDALTR LGR+GWAQRA AV+S AVGIARPSVALTQSLMTEAGKLGLLRA+ GA SPLV K++ LAEGEGPA RAR+LLK +GGLSE S+D+ELC AEGVL +LR+TPVVYPEEE++
Sbjct: 4 SSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAASAAEV-------------EAAGVCCALCEDKSEGRWVTRCKGSGGGTGTRQQQ-----------------TCNIWVHPACAWQNE--GYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATN--TAXXXXXXXXXXXXXXXXXARYASVKDLLARREELEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVSPLEAEVGQLEQLVASARSARAGPPAAVAAAEDALAAARWVLKAV-VLLTGGAGXAG--------AAGL----PAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTPPGENGKAD---------EDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGA------VSPLVTKVKALAEGEGPATRARDLLKPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEESV 737
BLAST of mRNA_P-fluviatile_contig11.1235.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI) HSP 1 Score: 696 bits (1797), Expect = 7.850e-215 Identity = 516/920 (56.09%), Postives = 590/920 (64.13%), Query Frame = 1
Query: 2878 LVEALRLRAACMQAXXXXXXXXXXXXXXXXXXXXXXXX------GNALTAWSKNAD----DLPAXXXXXXXXXXXXXXXXATRELVAQIVAAGVRALGWHSWRAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSEGRALLNAVFLPGGG--GDGVSGIPALEGAARETAVASPELAALRAAVAAKDAAXXXAWRXXXXX------GGWDRAFPAPPDTAWNSAFAGKSNDASEQERRRVASEWEAWRKSVSGLMGDMDGVLAALAAAAPSLRSALEDHVEARIKAGRWLLAAGGTISGSAPPAEGTKLLPTFESVEGLVQTPPPSS--SPSPYTPGDDSLSPSLVDSHEDXXXXXXXXXXXXXXXXXXAVEA-VLALLKELHAEAASWLQQAKAVLAGVGARAGGEGAASSPAIATAVAADGSAGVIEALLAREVLRAVRQFPEVELLRKALKSQGQWNPQVLAVLAVPLSQPLTAAGVGGGNTWLASARALLAKAPPTLPTGSSHLSLLQWAIAVGETADLMRAATSGGAISFNESRPSLADMEPLSERGKTLLLGGIRVATLLSAVGIAPPSGVAPL-AAPPPVPVSLRLADGPLAALSAIETVTRGVDACRQWIAGATALVSGXXXXXXXLDGASTVRLVQELQANRQLPFAVDGGDSSGAGGGLRSRLAHELSLKAPEHPELAHHLGS-VGGFG-VANGL--DEDD--GMAGVIDINDTGWASNSDLDSGAALTSMDV-----GTVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVS---RNGGTLSAKAARMQTGSVARAVPPPLFTGNAAPTTRGSRNQRTSPFNLKACSSCKKGRTSAIKCRVDLRHWEDHDWTDPPSRPWIMPDGFVEWIARVDCGPDGETPGSPRNMATAAAAASVRDAA 5529
L EALR RAAC+QAXXXXXXXXXXXXXXXXXXXXXXXX G+ L+AWSK+ D + XXXXXXXXXXXX + RELVAQIVAAGVR+LGWHSWR TL++G ALL+AV PG G G G + LEGAA TA AS E AALR AVAAKDAA AW+ GGW RAFPAPP T W A A + +RR V +EWE WRKS SGL+ M+GVLA + AAPSLRSALE ++ARI+AGRWL+A+GG + P G +PT +S E LVQTPPP S + +PY PGDD+L +D AV A VLA L+EL EA+SWL +A+ +LAG G G A DGSA +EALLAR+V+RA+ Q PE +LLR AL+S GQW+P+VLA+L VP++ GV G WLA AR LLA+AP TLP GSSHL+LL+W IAVGETA +M AAT+GGA+SFNESRP+ DMEPL+ERGKTLLLGG VATLLSAVGIAPP+GV PL AA PP P+SLRL DGPL ALS +E VTRGVDACRQW+AGATAL S XXXXXLDGAS+ RLVQELQANRQLP+AVDG +G GGGLR+ LAHELSLKAPEHPELAHHLGS VG FG VANG+ DEDD GMAG ID++D GWAS+SDLDS A+ ++DV T AP XX RNGGT+SA+AA +QT SVARAVPPPLFT AAPTTRGSRNQRTSPFNLKACS+CKKGR S VDCGPDGE PGSP N TAAAAA+VRDAA
Sbjct: 2 LTEALRWRAACLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDNLSAWSKSGDTTGQEKKGMPTXXXXXXXXXXXXGSGRELVAQIVAAGVRSLGWHSWRV--------------LAARAAFNALPGSNPSPPAKPTLADGHALLDAVISPGNGSGGSGAKPVAVLEGAALATAAASAEFAALREAVAAKDAAATMAWKWRDAATSGSGGGGWGRAFPAPPSTTWKEAVAVAAGGG---QRRHVVAEWETWRKSASGLVEGMEGVLAGVVDAAPSLRSALEVQLQARIEAGRWLVASGGVLF----PTGGR--IPTLDSTETLVQTPPPPSFSATAPYKPGDDALPVG-----DDPASDGASVAAAANQRQSAAVFADVLAGLQELRGEASSWLTEARGLLAGAG------GXXXXXXXAAVAMTDGSAKAVEALLARDVVRAM-QLPEEKLLRDALQSHGQWDPKVLAILTVPVA---AGGGVDSGG-WLAPARTLLAQAPTTLPPGSSHLALLRWTIAVGETAQVMLAATTGGAMSFNESRPAFTDMEPLAERGKTLLLGGTGVATLLSAVGIAPPAGVVPLLAAAPPAPLSLRLGDGPLTALSTVEAVTRGVDACRQWVAGATALASPGGXXXXXLDGASSARLVQELQANRQLPYAVDG---AGFGGGLRATLAHELSLKAPEHPELAHHLGSSVGSFGGVANGIVDDEDDAEGMAGAIDMSDVGWASSSDLDS--AMAAIDVVGAATTTEAPPPAPAPAVYPLAREQHRHSGATPAGSRGXXXXXXXRNGGTISARAAGLQTASVARAVPPPLFTNPAAPTTRGSRNQRTSPFNLKACSACKKGRIS------------------------------------VDCGPDGERPGSPHNARTAAAAAAVRDAA 841
BLAST of mRNA_P-fluviatile_contig11.1235.1 vs. uniprot
Match: A0A6H5KV96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV96_9PHAE) HSP 1 Score: 238 bits (607), Expect = 4.430e-67 Identity = 196/277 (70.76%), Postives = 208/277 (75.09%), Query Frame = 1
Query: 832 MQIQQWVKEVKVLAATDATTAAHASDVEGXXXXXXXXQARYASLKELLARREELEAPLEDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSD-------AGDEDDNKVVHGMEGVYSEASALLEAVADESDKAEVAVDAWFDDHPEAYYQKSDDGARLGYWKTSKAPLEAEVGRLEALVARARSARAGXXXXXXXXXXXXXXXRWALKAVGLLFTGGGGSXXXXXXXXXXAVGVGGRKPAFAEVSALLDNAEEAMTTSADRRGRANSAWQHVNDIR 1641
MQIQQWVKEVKVLAAT+ TA XXXXXXXX YASLKELLARREELEAPL XXXXXXXXXXXXXXXXXXXXXXXXXXXX AGDE+D KVVHGM GVY+EASALLE+VA+ESD+AE AVD WFD+HPE YY+KSD GARLGYWKTS LEAEVG+LE LVA ARSARAG RW LKAV LL G GG XXXXXXXX G+ PAF+EVSALLDNA EAM TSADRRGRAN+AWQHVNDIR
Sbjct: 1 MQIQQWVKEVKVLAATN--TAGAXXXXXXXXXXXXXXXXXYASLKELLARREELEAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYKKSDGGARLGYWKTSVGTLEAEVGQLEKLVATARSARAGPPAAVAAAEDALAAARWVLKAVVLLTGGAGGGAPXXXXXXXXXXGL----PAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIR 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig11.1235.1 >prot_P-fluviatile_contig11.1235.1 ID=prot_P-fluviatile_contig11.1235.1|Name=mRNA_P-fluviatile_contig11.1235.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1861bp AADTALQQQAPSSDEDFWAAVAAQAAQEGSSTTPAWRQVGVALPSSSAAVback to top mRNA from alignment at P-fluviatile_contig11:2804264..2825567+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig11.1235.1 ID=mRNA_P-fluviatile_contig11.1235.1|Name=mRNA_P-fluviatile_contig11.1235.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=21304bp|location=Sequence derived from alignment at P-fluviatile_contig11:2804264..2825567+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig11:2804264..2825567+ >mRNA_P-fluviatile_contig11.1235.1 ID=mRNA_P-fluviatile_contig11.1235.1|Name=mRNA_P-fluviatile_contig11.1235.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=11166bp|location=Sequence derived from alignment at P-fluviatile_contig11:2804264..2825567+ (Porterinema fluviatile SAG_2381)back to top |