mRNA_P-fluviatile_contig6.12604.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12604.1
Unique NamemRNA_P-fluviatile_contig6.12604.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig6.12604.1 vs. uniprot
Match: D7FJ28_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ28_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 9.600e-7
Identity = 34/69 (49.28%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    1 MPDMKEAMAKKVQAAARGYLTRKCTCYCYRAGGKKHKGGKGGKDA-------KNEEMQAKVIQAAFRKY 186
            M D K+ MA KVQAAARGY+ RK T    +  GKKHK G             K+E+M A +IQAAF+KY
Sbjct:    1 MGDFKDQMAAKVQAAARGYIQRK-TGMGGKTAGKKHKAGXXXXXXXXXXXXXKSEDMNAMIIQAAFKKY 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ28_ECTSI9.600e-749.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:2742356..2744101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIQ motif protein
Ec32 orthologEc-07_004620.1
Exons2
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816967.9338403-CDS-P-fluviatile_contig6:2742355..27424231622816967.9338403-CDS-P-fluviatile_contig6:2742355..2742423Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 2742356..2742423 +
1693570630.1106324-CDS-P-fluviatile_contig6:2742355..27424231693570630.1106324-CDS-P-fluviatile_contig6:2742355..2742423Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 2742356..2742423 +
1622816967.9447415-CDS-P-fluviatile_contig6:2743983..27441011622816967.9447415-CDS-P-fluviatile_contig6:2743983..2744101Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 2743984..2744101 +
1693570630.123034-CDS-P-fluviatile_contig6:2743983..27441011693570630.123034-CDS-P-fluviatile_contig6:2743983..2744101Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 2743984..2744101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12604.1prot_P-fluviatile_contig6.12604.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 2742356..2744101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12604.1

>prot_P-fluviatile_contig6.12604.1 ID=prot_P-fluviatile_contig6.12604.1|Name=mRNA_P-fluviatile_contig6.12604.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=62bp
MPDMKEAMAKKVQAAARGYLTRKCTCYCYRAGGKKHKGGKGGKDAKNEEM
QAKVIQAAFRKY
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mRNA from alignment at P-fluviatile_contig6:2742356..2744101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12604.1 ID=mRNA_P-fluviatile_contig6.12604.1|Name=mRNA_P-fluviatile_contig6.12604.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1746bp|location=Sequence derived from alignment at P-fluviatile_contig6:2742356..2744101+ (Porterinema fluviatile SAG_2381)
ATGCCGGACATGAAGGAAGCGATGGCTAAAAAGGTTCAGGCAGCAGCACG
TGGATACCTTACGCGGAAGTGAGTCAATATGCGCAGGCACCCTGTGATGC
ATCGAAAAACCGTGAGAGGAGATCCCACCAACACGCTCTCTTGGTACTAA
ACAAAAAATTGAAAACTCGGGGAAATCATGTGGGCGGGCATCGGCCCACA
GCCGCACACATCACGTGTACGTGTATCGCAGCAAAGTGCGGTAGATTTTT
CCGTTGATATTGCTCCCTCGTGAAATGAGTGATTTAACGGTCATGTTTTT
TGTGTGCAGCTGAGTTCGTGCACTCGTGATGTGATCTTTCACGACGTCTG
CCATCCAATCGTTTCGAAATTTGTCAAAGGGTTTTTCCCACATTTCAAGA
TCAAGATCTGGGTGCCACGCGTTCGTCCGGCGCATTTCACCCCGTGAAGT
GTATCCTAGAATTGAGACGGAGAAAACACCGCCAAATCTCCTGTAGTATC
TTGAGCAGCGAAGCATACTCAAGACGAAATTGGGAAACATTTGCACACGT
TTCACAGGAACCTTTGTCGCACTTGCTGCCGAGGCACTTCCACGGAGAGC
CGTTGTCTCAGAGAGCGCACAGATAGGTGTCGCCACTACACTCCACATTT
GCCCGACGTTTCCCGTACGGGCTACCTCGAACGATAACATGTTCTTGTCT
CGAGATTACTTCAGTCGTCCACATTGCTGAGGTCGTTGGGAAATCCATGC
TTTGTGTCGAAAATGTTACCGAAGGCGAAGAAACTTATGTAAAATCATTA
GCTCACCGACACCGGCAGACGCCTCGTGAGGTTGACACCGTCGAACAGTG
TTTTTGTCCTGATTCCCCCACGCGCGCGCTTGTGTTTGCGACTGTGCGGC
TTCGCGGCACCGGAAGTTGAGGACTTGTGGGATCACAAGTAAACGTCAAG
TACGCTCGACCTCAACAAGCCAAACAGTATTCACAATCAATTCGCAGCCC
CCTCATTTTTCTTGATCCTGATCATTGGGCCGCGATGGTACCTTTCCTAT
CCGGGTGTTTGTCCTGAACAGCCCAGGATTCGCGCACCTCTGCTTGCGCC
CAAGCTCAAATATCATGAATGCTTGGGCTTCGATTTTTCGCGTGCCACAT
TCCTATGTGGTGGCGCTCCGTGGATATCTACTCGCTGGGTATGCAGCTGT
CAGTGATACATGCCTTCCATGGAACTCAATTACTCGTACTGGTCAAGCGT
TTGGAGAAGATGATTGTTTTTATCAGAGAAAAAGGAATGGGGCCTCGACA
CACGTGTAGTCTAACCATTTGATGCATTCTGCATACGTATCACAAATCTT
CCGCGGCTGTCTCATCCTGCAGGTCTGAACGACCACATATCTTAACGCGA
CCTTTATCCCTTGTACCTGTGCAGGGCATCAACATGCCTTGACGTGCCAA
CAGCAGTGGAGAAAGCAATCCGCACAAATGCACTCGTGCTGGAAATTGCA
GGCGCAGGCTGGCATGCGCACCAATTTGAACGTTTGATTGAGGACAATCT
CAAAGCAGCCTTCCCGACATGCTTGACTTCCTCTTCGATGACTTCGTCGT
GATTATTTATTCGACCCTAACAAGCAAGGTGCACGTGTTATTGCTACAGG
GCGGGAGGAAAGAAACACAAGGGCGGCAAAGGCGGCAAGGACGCCAAGAA
CGAGGAAATGCAGGCCAAGGTTATCCAGGCGGCCTTTCGGAAGTAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig6:2742356..2744101+

>mRNA_P-fluviatile_contig6.12604.1 ID=mRNA_P-fluviatile_contig6.12604.1|Name=mRNA_P-fluviatile_contig6.12604.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=372bp|location=Sequence derived from alignment at P-fluviatile_contig6:2742356..2744101+ (Porterinema fluviatile SAG_2381)
ATGCCGGACATGAAGGAAGCGATGGCTAAAAAGGTTCAGGCAGCAGCACG
TGGATACCTTACGCGGAAATGCCGGACATGAAGGAAGCGATGGCTAAAAA
GGTTCAGGCAGCAGCACGTGGATACCTTACGCGGAAGTGCACGTGTTATT
GCTACAGGGCGGGAGGAAAGAAACACAAGGGCGGCAAAGGCGGCAAGGAC
GCCAAGAACGAGGAAATGCAGGCCAAGGTTATCCAGGCGGCCTTTCGGAA
GTACGTGCACGTGTTATTGCTACAGGGCGGGAGGAAAGAAACACAAGGGC
GGCAAAGGCGGCAAGGACGCCAAGAACGAGGAAATGCAGGCCAAGGTTAT
CCAGGCGGCCTTTCGGAAGTAC
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