mRNA_P-fluviatile_contig58.12232.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig58.12232.1
Unique NamemRNA_P-fluviatile_contig58.12232.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig58.12232.1 vs. uniprot
Match: D8LHR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR7_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.060e-53
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 1 
Query:    1 MSTDRFPGEPSAATKDAADCLVKGLGDLLRAQFTVANGDVAKVAAVTNALAAELGCMRKNVASINNYCSDCERQVAGTRGDPALATALTAVDSCHQETLLLEEVVGQLEGQMAQLEERWGRLKR 372
            MS  R  GEPSA+TK AAD LVKGLGD+LRAQ TVANGDV K AAVT+A+A EL CMRK+V SIN YCSDCE+++AGT GDP+L+TAL A+DSCHQET LLEEV+GQLEGQMAQLEERWGRLKR
Sbjct:    1 MSAGRAHGEPSASTKAAADVLVKGLGDMLRAQLTVANGDVTKAAAVTDAVAGELDCMRKDVGSINLYCSDCEKKIAGTGGDPSLSTALAAIDSCHQETALLEEVLGQLEGQMAQLEERWGRLKR 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig58.12232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR7_ECTSI1.060e-5377.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig58contigP-fluviatile_contig58:713699..718209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000170.1
Exons4
Model size2489
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig58.12232.1prot_P-fluviatile_contig58.12232.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig58 715813..718209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816953.995304-UTR-P-fluviatile_contig58:713698..7158121622816953.995304-UTR-P-fluviatile_contig58:713698..715812Porterinema fluviatile SAG_2381UTRP-fluviatile_contig58 713699..715812 -
1693570604.0277383-UTR-P-fluviatile_contig58:713698..7158121693570604.0277383-UTR-P-fluviatile_contig58:713698..715812Porterinema fluviatile SAG_2381UTRP-fluviatile_contig58 713699..715812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.008421-CDS-P-fluviatile_contig58:715812..7158411622816954.008421-CDS-P-fluviatile_contig58:715812..715841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 715813..715841 -
1693570604.038143-CDS-P-fluviatile_contig58:715812..7158411693570604.038143-CDS-P-fluviatile_contig58:715812..715841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 715813..715841 -
1622816954.0235007-CDS-P-fluviatile_contig58:716892..7170151622816954.0235007-CDS-P-fluviatile_contig58:716892..717015Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 716893..717015 -
1693570604.0485165-CDS-P-fluviatile_contig58:716892..7170151693570604.0485165-CDS-P-fluviatile_contig58:716892..717015Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 716893..717015 -
1622816954.036233-CDS-P-fluviatile_contig58:717238..7173581622816954.036233-CDS-P-fluviatile_contig58:717238..717358Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 717239..717358 -
1693570604.0591335-CDS-P-fluviatile_contig58:717238..7173581693570604.0591335-CDS-P-fluviatile_contig58:717238..717358Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 717239..717358 -
1622816954.0494144-CDS-P-fluviatile_contig58:718106..7182091622816954.0494144-CDS-P-fluviatile_contig58:718106..718209Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 718107..718209 -
1693570604.070632-CDS-P-fluviatile_contig58:718106..7182091693570604.070632-CDS-P-fluviatile_contig58:718106..718209Porterinema fluviatile SAG_2381CDSP-fluviatile_contig58 718107..718209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig58.12232.1

>prot_P-fluviatile_contig58.12232.1 ID=prot_P-fluviatile_contig58.12232.1|Name=mRNA_P-fluviatile_contig58.12232.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=125bp
MSTDRFPGEPSAATKDAADCLVKGLGDLLRAQFTVANGDVAKVAAVTNAL
AAELGCMRKNVASINNYCSDCERQVAGTRGDPALATALTAVDSCHQETLL
LEEVVGQLEGQMAQLEERWGRLKR*
back to top

mRNA from alignment at P-fluviatile_contig58:713699..718209-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig58.12232.1 ID=mRNA_P-fluviatile_contig58.12232.1|Name=mRNA_P-fluviatile_contig58.12232.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4511bp|location=Sequence derived from alignment at P-fluviatile_contig58:713699..718209- (Porterinema fluviatile SAG_2381)
ATGTCGACAGATAGATTTCCTGGAGAACCTTCAGCCGCTACGAAGGACGC
GGCGGATTGTTTGGTGAAAGGATTAGGAGATCTACTTCGTGCTCAATTCA
CAGGTGTGTGTGGTGAAACATCAGGAGATTCGGCATGAGAGTACCATGCG
CGTAGGAATGCAATGTAGGGCAATATGTTTGATGGACATGGATTTATCAA
AGATTTGACACCTTCCCTGCATGGACAGAGACACACTGATTTGAGCTTCG
AAAATCTCTACAATACAGCTGGTCCATTATCTTCGGCAGCATTCACAAAG
TCGTTCGGTGCACACTGGCAGGCGTGCTTGTTAACGTTCCGCTTGTAAGC
CTTAGCTGCTGCGTTCTCGCATAGACTAGCTAGTCTAGTCTACAGACTAC
TAGCTAACTATTGGTTGGCCATTGTGCACATAGTGACGAATAAATCTGGC
GACCCTGGTTGCGCCGCGTGTAGATTACCATAGCTCGAATAAAATTTCAC
CCACCCCAGGTCGATTTTCATCGCTCGATTTCTTAGCGGTTAAAAGAGGT
AGTTTCGTCAAACGGAGCCAGCAGCTTTCGAGAGAAGCTGTTCAGAGCTT
CTAGTGACACTTCGCTCGATGTTAGGCAATCCCTCGCCAACGAGATAGCG
GGCTACAATAACCAATCCAGGGGGTTCTTATGCGACGATATCGGACATTA
TCGTGCAGTTTTTGTCACCTCACATGAAAAGCGAGGTCGTGCGCTTGGTG
AACAGAGCTATCCGGCGCGTCAGTAAGGGTTGAGTGTGCAGCCCACTTTG
CAATGATTATCGGTGGCAAAATCTCGACACATCCATTTAATTGATTCTCA
GTTGCAAACGGAGACGTGGCGAAGGTAGCGGCGGTGACAAACGCCTTGGC
GGCAGAGCTCGGCTGCATGCGGAAGAACGTCGCGTCGATCAACAACTATT
GCAGCGACTGCGAGAGACAAGGTGAGTCTGATTTGTGGGGGTGCTTGTGG
ATAGATAGCACGTGCTGCTACAGCAGTTTTTGTCGCAATCTTGCAACTGA
TTTTGTCGTGGACGTGGTTGAGGGATGCAAAGGTTGTGGCGTGATGTACA
GTTTTACAGCTCTCTTGCATTCGGCTCCGTATCACTCCGCGTAATTATTG
AATTGTCAATGGTTAAGGTGTGTGCACGGCCGTGTTGAGAGAAGTTGCGG
GAACACGCGGGGACCCAGCGCTCGCCACCGCGTTAACCGCCGTCGACAGC
TGTCACCAGGAGACTCTGCTTCTCGAAGAGGTTGTCGGACAACTCGAGGG
GCAGATGGCCCAGCTAGGTAAGCAACCCCTGTCGAGGCGAAGAAGTACGT
TTAGGGTGGGCCACCATTTTCTGTGTTCCTTACACCACAGCATTCAGGCC
GGTCGTTATGGAAGAATTGGAATTGAGAGAAGCTGGAATGGTGGGGGCCT
CACAAACTGGCCTTCGCACCCCCCATGACGGGCTTTGAAGTGGTCAAACA
CACTGAGTGCTCGCTTCACAGAGGTCCGTTGACCATGAAGCGTGCACTCT
ACTAAGGTGAGTGTCTCGGAGCTGCAGGAGTGTAGTGGGGATCAAGAACT
CGCGAAACGCGTCCAATTCCAGCGGCTGATATTGGGAAAGAGCCAGTTGA
ATATGGTGACTTTTGACACCTCGCCTCTCTCCCTTTTCGGGTATCGAAAT
GGAACGCTTGTGAAAGTTGCTGCCCAAACTCCACTTCTTCTGCCCGAACT
TGGTGCCGAGAAATGCACACACAGTGGAGTGTACAGCATCGAATTTTTTC
CAATGGACCTCTGTGAGGCGAGCACTGCGTGATCATGTGTGTTCTGACCG
TTTCCAAGCGGTCTCGGGGGGCTGAGATGCTTTGGAGGCTAGTCTGCGAA
GCCCCACCATTCCAATTTCAATTCTTCCATAACAATCGGCCTCAGCAGCG
GGTCATGCACGCACTCCATTTTCTTCAGCAGCGTCTTCAACAAGGCTTGC
TGCAGCGCAGCCACCCGAGAATAGCATACAATGTTGCATCCTTGTGCGCC
CTTGCAACGGTTGCGATGTGGTCTGGGGATGTGGCATTTTTCGCCCCCGG
AAGCGGGCCAGGACACGATGTACGTTGTGGCGTACCTGGCTTGTGTGAGG
GCAACGTTGTGCCACCTGGCGGCCGAGATCGCGACGTAACGCCCGCCCGG
TCGGGATTACAACGCATTGTGTACAGACGCGTGGCACTTCTCACCTTCGA
AAGAGCGTTGGACAGAGCCGTCAATCTGGAACGCTGGCTCAAAACATGTT
TATTTTGATGTCCGTGACATGTCCCGCCGAACCCTTGCCTGCCCACGCTG
CTTCCATTGTTTCGACAGAGGAGAGGTGGGGGCGCCTCAAGCGGTGAAGA
CAAGAGAGCGTGGAAGTGCTGTGCATACTTTTGCATCCTTCGATGGACAA
GCATGGTGCATTGGGCATTGAATATGTGCACGATTGGCGAGAGTTGGGCT
CTGAGCAAGCGCAGGCTCATTAACGTCATTTGCGCAGCCGTGTAGAGATA
TTGTTTGTGTTTCTTGGCGCGCGTAGACTATCATGAGGGTACGATTATAT
CGGGGATCAGGACTGGTTTGCCATGCGATTGAAAGGTGTAGGTATGACCC
CCAGGTAGAATCTTGCCGCAACACATGGATTTCAGCGGTGATGTTTTTCA
AATTTGATATAAGAAGCAGGTTTATGCCGAAGAAAATAGGCATTGCGCCC
TACTTGGGCGTAGCAGTCGGTTTCGCCCTTCGGAGGTGTTGGGCGTACAG
GGTGGGGACACTGATCTGCGGGGTGCCTGAAGGGGGTGACGTGGATTGTC
ATGGTGTGTATGTGGCGGAGCCCCAGGCCGGTCCACCCCAGCACTTCCTC
TCAAGAATCGAAATCAATCTACCTACGTCAAGTGCACCGGGCACGAGAGC
TTTAAGCGTGGCAACAGAGGACATGCATTGGCACACAAACACGATATATC
GATATATCGAACAACGTCGATAGCAAGCTCAAGGACCACCGGTGGGGGGC
GCTTTCAATACCGCGGAAGGGGCGGGTATGCGGTGTGTAAAGTATGTGTG
TGTGACGCAGGCATGTGTGAGTCCTGCTGTGGTGGGCAAGAAGAAGATCC
GGCCATTTGGTGGAGAGTGTGTGTATTTTGGTGGAGAGCTGCGGCGGCAA
AGCGACGAGACCATCTAGCTATAAAGGGGAGGAGGCGGACATCAGATCGG
AGAACGGAGAAGGACAGCAGTTTTACTTTAGTGAGGCTCAATTGCTCATC
TACAGCAGTACGGCGGAGGAAGCGGTGCAGTATCCGCGTCGCTGATCAGC
ATGGAGGTTCGTCTCGGCATAGCGGAGCAGAATCCGTGATTTGATTTTTT
TTTGGAAGCACAGGTGGAGATGAAAGCGAAGAGCAGAGTGCGAGCTCAAG
TTGCGGAGGCGAAGCAGAGGACGGCACTGCTGCAGCAGCGCGAGCAAAAG
AGGGCAACAGGGGCGTTGAAGCATCTCGCCGACATAACCATGCGGCTGGA
TGTGGCGAAGAGCGCTGGCTGGAAGCTGAGAAGAGAGAGGGAGCAGCTGA
GTCGAGGGCAAACGAAATAAAGGAGAAAAAAGCAGCAGCGATGGAATGGA
TGATGGCTGTGGGAGCAGGGTCTTGCGGGGAAGCATACAGGTGCGCCTTG
AAGGAAGATGTGGCTGCTATTGCGGCAGTCAGAGCAGCAACGACTCGTGA
GGCAGATGCAGCGCACGATGACTACGCTCACGTGCGTCGAGATTACCATC
GCCTCCTGAAGCAGGAGATGATTCGAGTGCGTACGGCGCATCAACTGCGG
TATCACGACCTGAATCAGCCACGACCCCAATCATCGACGGCAGAGCTTCC
CCTTCTGTATGTGTAGAGAGAGCGATGGTGGCGTCCACGGACGACATCTA
TCTGCTGTTGGAGCGGCACTGCGACAACTGAATCGAGCAGCATTATCTCC
GCTTCCAAGATGGAAGAAGAGTGTGCGTATGTGCTGATGCGACGGTACCG
ACAGCACCTGGTGCGAAGTATAGGACTACTTCCACTGCCGTGTTGGCACG
GGGGGGCACCGGGAGGTACGCATCGCAAACTTCAGCAGCAGCGATATCGG
AGTCCAACGGCGCGGGTCCCATTTGTGCGGGTGGGACTGCCGCGCCAACC
GTTTCACCACCTGAAATCTCAGCGCCTGTGGTGACTTCGGGGGCAGACAA
TAGCGCATCTCACGTTGCGACGGTGGGATTGACGGCCGGTGCTTCCCCCT
ACCTCCTAGCGACGAGTGGAGCAGCTGCCGAAGTGGGAGAGATCGACAAG
TGCACGGAGGGACACTTTCTGGTCGCAGATGGTGGTGCCAGCTGGCTCGA
CAGCACCTGTGAGCAGAGGGGGCTTCTACACAACCCTTCGATCCCGGCCC
TCCGTGCCCGCTGGAATTTCGACAGCCTTTCTTGTGCGAAAGTGCAGGCA
CAAGCAGCTGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig58:713699..718209-

>mRNA_P-fluviatile_contig58.12232.1 ID=mRNA_P-fluviatile_contig58.12232.1|Name=mRNA_P-fluviatile_contig58.12232.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=750bp|location=Sequence derived from alignment at P-fluviatile_contig58:713699..718209- (Porterinema fluviatile SAG_2381)
ATGTCGACAGATAGATTTCCTGGAGAACCTTCAGCCGCTACGAAGGACGC
GGCGGATTGTTTGGTGAAAGGATTAGGAGATCTACTTCGTGCTCAATTCA
CAGATGTCGACAGATAGATTTCCTGGAGAACCTTCAGCCGCTACGAAGGA
CGCGGCGGATTGTTTGGTGAAAGGATTAGGAGATCTACTTCGTGCTCAAT
TCACAGTTGCAAACGGAGACGTGGCGAAGGTAGCGGCGGTGACAAACGCC
TTGGCGGCAGAGCTCGGCTGCATGCGGAAGAACGTCGCGTCGATCAACAA
CTATTGCAGCGACTGCGAGAGACAAGTTGCAAACGGAGACGTGGCGAAGG
TAGCGGCGGTGACAAACGCCTTGGCGGCAGAGCTCGGCTGCATGCGGAAG
AACGTCGCGTCGATCAACAACTATTGCAGCGACTGCGAGAGACAAGTTGC
GGGAACACGCGGGGACCCAGCGCTCGCCACCGCGTTAACCGCCGTCGACA
GCTGTCACCAGGAGACTCTGCTTCTCGAAGAGGTTGTCGGACAACTCGAG
GGGCAGATGGCCCAGCTAGTTGCGGGAACACGCGGGGACCCAGCGCTCGC
CACCGCGTTAACCGCCGTCGACAGCTGTCACCAGGAGACTCTGCTTCTCG
AAGAGGTTGTCGGACAACTCGAGGGGCAGATGGCCCAGCTAGAGGAGAGG
TGGGGGCGCCTCAAGCGGTGAAGGAGAGGTGGGGGCGCCTCAAGCGGTGA
back to top