prot_P-fluviatile_contig55.11892.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig55.11892.1
Unique Nameprot_P-fluviatile_contig55.11892.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length342
Homology
BLAST of mRNA_P-fluviatile_contig55.11892.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 481 bits (1239), Expect = 1.440e-168
Identity = 250/317 (78.86%), Postives = 285/317 (89.91%), Query Frame = 0
Query:    1 MRGPSNKSVAVLAVTASTGSLSVGYWLIRRFRRRLNQSRALRKGAVSPPDATSLAVGDYVHLRGTVSAGTRVLESPMKQLACVAYRVNVVRVVDSRTARKKASVTGVWGVLGGLAAVIPWLFSFATTAEVDSEKWDTVYQTISTRAETVEIFLDGPDAISDLGSLA---AGQRRPRVRVDLAGAEFFSMEEVASEFEAEKSPCSGGKSSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAAGDVVVRKAAPSSILDLKTTSISKPFVVSTKTEQGLLQEIERSGRVFFWLALPTLAVGIALGYAGVLRTLAAVEE 314
            MRGPSNKSVAVLAVTASTGSLS+GY+L+RRFRRRLNQS+ALR G VS PDA SLAVGDYV +RGTVSAG R L+SPMK++ACV+YRVNVVRVVDSRTA+KKASV G+WGVLGG+A+V+PWL SFA TA+VD+EKWDTVYQ IS+R ETV+IFLD  D+I+DL ++A    G+RRPRVRVDLAGAEFFSME+VASEFEAEK+    GK SSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGA GDVV+RKAAPSSILDLKTTSIS+PFV S K+EQGLLQEIERSGR++FWLALP++AVG+A  Y GVLR LA +E+
Sbjct:    1 MRGPSNKSVAVLAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVQIFLDDHDSIADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKAT---GKVSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLATIED 314          
BLAST of mRNA_P-fluviatile_contig55.11892.1 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.430e-45
Identity = 79/97 (81.44%), Postives = 90/97 (92.78%), Query Frame = 0
Query:  218 EVLAVGSRLIVLGEVGEDPEGAAGDVVVRKAAPSSILDLKTTSISKPFVVSTKTEQGLLQEIERSGRVFFWLALPTLAVGIALGYAGVLRTLAAVEE 314
            +VLAVGSRLIVLGEVGEDPEGA GDVV+RKAAPSSILDLKTTSIS+PFV S K+EQGLLQEIERSGR++FWLALP++AVG+A  Y GVLR LAA+E+
Sbjct:    2 QVLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLAFAYVGVLRVLAAIED 98          
BLAST of mRNA_P-fluviatile_contig55.11892.1 vs. uniprot
Match: A0A6V1PF55_HETAK (RING-type E3 ubiquitin transferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PF55_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 4.100e-14
Identity = 85/320 (26.56%), Postives = 141/320 (44.06%), Query Frame = 0
Query:    3 GPSNKSVAVLAVTASTGSLSVGYWLIRRFRRRLNQSRALRKGAVSPPDATSLAVGDYVHLRGTV----SAGTRVLESPMKQLACVAYRVNVVRVVDSRTARKKASV-----TGVWGVLGGLAAVI------PWLFSFATTAEVDSEKWDTVYQTISTRAETVEIFLDGPDAISDLGSLAAGQRRPRVRVDLAGAEFF--SMEEVASEFEAEKSPCSGGKSSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAAGDVVVRKAAPSSILDLKTTSISKPFVVSTKTEQGLLQEIERSGRVFFWLALPTLAVGIALGYAGV 305
            GP   + ++     +  S  +  +    FRR   +S+ LR       +   +  G YV L+G +      G+  L SP  Q  CV Y++  +RVV+  +A KK+       TG   V G     +        + +++  A V+   W   ++ +    E   + L         GS+A         ++ AGA++F  +    +  F AEK     G++  R  LG +  EEVL VG +++V GEV    +  A  +VVR+AA  S+ D + T I+KPF+V+      LL ++E+SG    W       +G+   Y G+
Sbjct:    5 GPPRDNSSLALGIGAIASFGISCFCGSLFRRANEKSKLLR--ITKKVNVAGVQEGQYVMLQGCLVPKDEEGS--LISPESQQPCVMYKMTKIRVVEELSAVKKSKTGQKKGTGTKNVAGDRTTCVGEERKEEKVENYSDQA-VEQNDWKVKHEVMENNTEKTAMCLK-----DKTGSIA---------IETAGAQYFYGTGWGTSERFIAEKEELKRGQT--RRALGIKILEEVLPVGQKVLVFGEVQNSDDDDA-PLVVRRAAARSMFD-RRTGIAKPFIVTCFGRTELLAQVEQSGVALAWTGGIFFLIGVGCTYFGL 301          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig55.11892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLV1_ECTSI1.440e-16878.86RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5LN52_9PHAE5.430e-4581.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1PF55_HETAK4.100e-1426.56RING-type E3 ubiquitin transferase n=1 Tax=Heteros... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022170E3 Ubiquitin ligase, GIDE-typePFAMPF12483GIDEcoord: 132..300
e-value: 5.5E-15
score: 55.1
IPR018370Chaperonin Cpn60, conserved sitePROSITEPS00296CHAPERONINS_CPN60coord: 310..321
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 285..306
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 123..284
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..122
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 307..341
NoneNo IPR availableTMHMMTMhelixcoord: 106..128
NoneNo IPR availableTMHMMTMhelixcoord: 10..29
NoneNo IPR availableTMHMMTMhelixcoord: 284..306

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig55contigP-fluviatile_contig55:205557..214740 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig55.11892.1mRNA_P-fluviatile_contig55.11892.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig55 205557..216247 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig55.11892.1 ID=prot_P-fluviatile_contig55.11892.1|Name=mRNA_P-fluviatile_contig55.11892.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=342bp
MRGPSNKSVAVLAVTASTGSLSVGYWLIRRFRRRLNQSRALRKGAVSPPD
ATSLAVGDYVHLRGTVSAGTRVLESPMKQLACVAYRVNVVRVVDSRTARK
KASVTGVWGVLGGLAAVIPWLFSFATTAEVDSEKWDTVYQTISTRAETVE
IFLDGPDAISDLGSLAAGQRRPRVRVDLAGAEFFSMEEVASEFEAEKSPC
SGGKSSSRTQLGYRTTEEVLAVGSRLIVLGEVGEDPEGAAGDVVVRKAAP
SSILDLKTTSISKPFVVSTKTEQGLLQEIERSGRVFFWLALPTLAVGIAL
GYAGVLRTLAAVEEGRAAGGAEPLTRGGGSSSWRGGWSERR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022170GIDE
IPR018370Chaperonin_Cpn60_CS