mRNA_P-fluviatile_contig11.979.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.979.1
Unique NamemRNA_P-fluviatile_contig11.979.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5K8V1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.340e-7
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   73 LRSGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            L +GAGR LKVEVG+Q D WLEQSDN+ERW
Sbjct:   53 LHAGAGRFLKVEVGRQMDIWLEQSDNLERW 82
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5JJY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.860e-6
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVG+Q D WLEQSDN+ERW
Sbjct:  480 AGAGRFLKVEVGRQMDTWLEQSDNLERW 507
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5KNM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM3_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.160e-6
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVG+Q D WLEQSDN+ERW
Sbjct:   34 AGAGRFLKVEVGRQMDIWLEQSDNLERW 61
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5JB98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB98_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.170e-6
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVG+Q D WLEQSDN+ERW
Sbjct:   56 AGAGRFLKVEVGRQMDIWLEQSDNLERW 83
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5K8Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y5_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.490e-6
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVG+Q D WLEQSDN+ERW
Sbjct:  172 AGAGRFLKVEVGRQMDIWLEQSDNLERW 199
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5K7A3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A3_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.550e-6
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVG+Q D WLEQSDN+ERW
Sbjct:  487 AGAGRFLKVEVGRQMDIWLEQSDNLERW 514
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5JFR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.480e-6
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVE+G+Q D WLEQSDN+ERW
Sbjct:  468 AGAGRFLKVEIGRQMDIWLEQSDNLERW 495
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5KHP9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP9_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 4.150e-6
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVG+Q D WLEQSDN ERW
Sbjct:   55 AGAGRFLKVEVGRQMDIWLEQSDNPERW 82
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BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: A0A6H5JFU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU2_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.640e-6
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVG+Q D WLEQSDN+ERW
Sbjct:   55 AGAGRFLKVEVGRQLDMWLEQSDNLERW 82
[Close]
BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.770e-6
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   79 SGAGRMLKVEVGKQQDAWLEQSDNIERW 162
            +GAGR LKVEVGK+ D WLEQ+DNIERW
Sbjct:  489 AGAGRFLKVEVGKRMDMWLEQADNIERW 516
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8V1_9PHAE6.340e-776.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJY5_9PHAE1.860e-678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNM3_9PHAE2.160e-678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB98_9PHAE2.170e-678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Y5_9PHAE2.490e-678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7A3_9PHAE2.550e-678.57HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JFR9_9PHAE3.480e-675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHP9_9PHAE4.150e-678.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFU2_9PHAE4.640e-678.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LRF1_ECTSI4.770e-678.57C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:41459..42326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.6516263-CDS-P-fluviatile_contig11:41458..415401622815430.6516263-CDS-P-fluviatile_contig11:41458..41540Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 41459..41540 +
1693561823.7388291-CDS-P-fluviatile_contig11:41458..415401693561823.7388291-CDS-P-fluviatile_contig11:41458..41540Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 41459..41540 +
1622815430.670242-CDS-P-fluviatile_contig11:42245..423251622815430.670242-CDS-P-fluviatile_contig11:42245..42325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 42246..42325 +
1693561823.750405-CDS-P-fluviatile_contig11:42245..423251693561823.750405-CDS-P-fluviatile_contig11:42245..42325Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 42246..42325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.979.1prot_P-fluviatile_contig11.979.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 41459..42325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.979.1

>prot_P-fluviatile_contig11.979.1 ID=prot_P-fluviatile_contig11.979.1|Name=mRNA_P-fluviatile_contig11.979.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
HEGNARLSRPHGRRSPTSSARRGILRSGAGRMLKVEVGKQQDAWLEQSDN
IERW
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mRNA from alignment at P-fluviatile_contig11:41459..42326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.979.1 ID=mRNA_P-fluviatile_contig11.979.1|Name=mRNA_P-fluviatile_contig11.979.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=868bp|location=Sequence derived from alignment at P-fluviatile_contig11:41459..42326+ (Porterinema fluviatile SAG_2381)
CATGAAGGAAACGCCCGCCTGAGTCGGCCTCATGGCAGGAGATCGCCCAC
CTCAAGTGCGAGGCGGGGCATTTTACGCTCAGGCGCGGCATTTTACGCAC
GTCGTCTGTTCAACTATTTGTTCACATGTTTTGGCGTTTTGACCAGTTTT
GACATGTGGGGGTTTCGTGTTGCACGTCGGCGCGACGGCGATGATATACT
GGCGGACACGAGAGGATATAGACGGGACAAATAACTGCGAAATACCACAC
ATTAATTGGCCTATAATACACGCGACACGTATACTTGTTCACAGAGGCAT
TGTGAGCATGCATTGCACGCACACGTGTTTTTTGCCTCGCTCAGCTCATC
ATAATATCTAGTGTCTACACGCATACAGTAGGCGCCCGCACTTAAGAAAA
TGGCAGTTAAGAAATTGAGGGTTCAAAATTCCCAAAACTTAAGAACATGA
CCATAAGAACATGTGCTCATTTTAGAGGTGCCAATAAGAACAAGAACACG
GAACGAGGTGTCGAAACTCGTGGTCAAGATAAGAACGGGGTCCTTAGCAC
GTGCAAGCTGGAAGATAAGAACTTGTCGGTGGGTCATACCGTCCCCCCGT
CCCCCCCTCCCAATAGTTTTTCCACAACAGCGGGGGGGTGTAGCCGCCAA
AAATGAGCGACACTCCTTCTCATGGACAACTTGCACGCGCAGACGACGCC
TGCGTTTAAGGACTATCTGTCGAAGCACTGCAACACGCTCGCCTGGTATT
TTCCGGCCAACACGACGGACGACGCCCGTGGATGCAGGAGCCGGACGCAT
GCTGAAGGTGGAGGTTGGAAAGCAACAGGACGCTTGGCTGGAACAGTCAG
ACAACATCGAAAGGTGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:41459..42326+

>mRNA_P-fluviatile_contig11.979.1 ID=mRNA_P-fluviatile_contig11.979.1|Name=mRNA_P-fluviatile_contig11.979.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig11:41459..42326+ (Porterinema fluviatile SAG_2381)
CATGAAGGAAACGCCCGCCTGAGTCGGCCTCATGGCAGGAGATCGCCCAC
CTCAAGTGCGAGGCGGGGCATTTTACGCTCAGCATGAAGGAAACGCCCGC
CTGAGTCGGCCTCATGGCAGGAGATCGCCCACCTCAAGTGCGAGGCGGGG
CATTTTACGCTCAGGAGCCGGACGCATGCTGAAGGTGGAGGTTGGAAAGC
AACAGGACGCTTGGCTGGAACAGTCAGACAACATCGAAAGGTGGGAGCCG
GACGCATGCTGAAGGTGGAGGTTGGAAAGCAACAGGACGCTTGGCTGGAA
CAGTCAGACAACATCGAAAGGTGG
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