mRNA_P-fluviatile_contig11.1273.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1273.1
Unique NamemRNA_P-fluviatile_contig11.1273.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3175671..3176051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.0825448-CDS-P-fluviatile_contig11:3175670..31760511622815430.0825448-CDS-P-fluviatile_contig11:3175670..3176051Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3175671..3176051 +
1693561819.627359-CDS-P-fluviatile_contig11:3175670..31760511693561819.627359-CDS-P-fluviatile_contig11:3175670..3176051Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3175671..3176051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1273.1prot_P-fluviatile_contig11.1273.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3175671..3176051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1273.1

>prot_P-fluviatile_contig11.1273.1 ID=prot_P-fluviatile_contig11.1273.1|Name=mRNA_P-fluviatile_contig11.1273.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=127bp
MSRQVSGGLHVHRFPRGVQRVCCLLQRIESQGLAGSSAVFQGRAWEDTVG
ISSNRRLHDADIDLHIVFCFSAVRECPVLPRLAHAAGGVKGVLLGGPSWW
KIVTHASADKVVGRGEWGILCVRTSS*
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mRNA from alignment at P-fluviatile_contig11:3175671..3176051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1273.1 ID=mRNA_P-fluviatile_contig11.1273.1|Name=mRNA_P-fluviatile_contig11.1273.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=381bp|location=Sequence derived from alignment at P-fluviatile_contig11:3175671..3176051+ (Porterinema fluviatile SAG_2381)
ATGTCAAGACAGGTTTCCGGAGGTCTCCACGTGCATCGTTTCCCACGCGG
TGTGCAGCGTGTATGCTGCTTGCTGCAACGTATAGAATCTCAGGGGTTAG
CTGGCAGCAGCGCCGTATTTCAAGGAAGGGCTTGGGAGGATACTGTTGGA
ATATCAAGCAATAGAAGGCTCCATGACGCAGACATTGACCTACACATTGT
GTTCTGTTTTTCGGCCGTTCGAGAGTGTCCAGTGCTGCCCCGGTTAGCAC
ACGCGGCGGGTGGGGTGAAGGGCGTGCTACTCGGGGGGCCGTCTTGGTGG
AAAATCGTCACACACGCGAGTGCTGATAAGGTCGTGGGAAGAGGCGAGTG
GGGTATCCTGTGCGTCCGCACCTCGAGCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3175671..3176051+

>mRNA_P-fluviatile_contig11.1273.1 ID=mRNA_P-fluviatile_contig11.1273.1|Name=mRNA_P-fluviatile_contig11.1273.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=762bp|location=Sequence derived from alignment at P-fluviatile_contig11:3175671..3176051+ (Porterinema fluviatile SAG_2381)
ATGTCAAGACAGGTTTCCGGAGGTCTCCACGTGCATCGTTTCCCACGCGG
TGTGCAGCGTGTATGCTGCTTGCTGCAACGTATAGAATCTCAGGGGTTAG
CTGGCAGCAGCGCCGTATTTCAAGGAAGGGCTTGGGAGGATACTGTTGGA
ATATCAAGCAATAGAAGGCTCCATGACGCAGACATTGACCTACACATTGT
GTTCTGTTTTTCGGCCGTTCGAGAGTGTCCAGTGCTGCCCCGGTTAGCAC
ACGCGGCGGGTGGGGTGAAGGGCGTGCTACTCGGGGGGCCGTCTTGGTGG
AAAATCGTCACACACGCGAGTGCTGATAAGGTCGTGGGAAGAGGCGAGTG
GGGTATCCTGTGCGTCCGCACCTCGAGCTGAATGTCAAGACAGGTTTCCG
GAGGTCTCCACGTGCATCGTTTCCCACGCGGTGTGCAGCGTGTATGCTGC
TTGCTGCAACGTATAGAATCTCAGGGGTTAGCTGGCAGCAGCGCCGTATT
TCAAGGAAGGGCTTGGGAGGATACTGTTGGAATATCAAGCAATAGAAGGC
TCCATGACGCAGACATTGACCTACACATTGTGTTCTGTTTTTCGGCCGTT
CGAGAGTGTCCAGTGCTGCCCCGGTTAGCACACGCGGCGGGTGGGGTGAA
GGGCGTGCTACTCGGGGGGCCGTCTTGGTGGAAAATCGTCACACACGCGA
GTGCTGATAAGGTCGTGGGAAGAGGCGAGTGGGGTATCCTGTGCGTCCGC
ACCTCGAGCTGA
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