mRNA_P-fluviatile_contig11.1270.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1270.1
Unique NamemRNA_P-fluviatile_contig11.1270.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3160048..3160725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size678
Cds size675
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.9582782-UTR-P-fluviatile_contig11:3160047..31600501622815429.9582782-UTR-P-fluviatile_contig11:3160047..3160050Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3160048..3160050 +
1693561819.6109855-UTR-P-fluviatile_contig11:3160047..31600501693561819.6109855-UTR-P-fluviatile_contig11:3160047..3160050Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3160048..3160050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.969002-CDS-P-fluviatile_contig11:3160050..31607251622815429.969002-CDS-P-fluviatile_contig11:3160050..3160725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3160051..3160725 +
1693561819.6189468-CDS-P-fluviatile_contig11:3160050..31607251693561819.6189468-CDS-P-fluviatile_contig11:3160050..3160725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3160051..3160725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1270.1prot_P-fluviatile_contig11.1270.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3160051..3160725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1270.1

>prot_P-fluviatile_contig11.1270.1 ID=prot_P-fluviatile_contig11.1270.1|Name=mRNA_P-fluviatile_contig11.1270.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=225bp
MRLWVPQVGLSLLVAPAKSYVLRPVSIPQHVVLGSNGDGGCGPVRPRGPL
TSTTKAPKPRCSTSAPRRTAPGHLSARADENSGREHDDGFASLDDLLGVD
MDPSGGLEDPTLEFRPPPLSRRPSSAGVGRVVSDAWLDELLDADNEEPST
SINGGTSSPKAIFPSSAAGGILESLIDDVTAVDRRDGPRAAAASTAAAAP
SAVADPPAADTAAALDDWLNELLDE
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mRNA from alignment at P-fluviatile_contig11:3160048..3160725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1270.1 ID=mRNA_P-fluviatile_contig11.1270.1|Name=mRNA_P-fluviatile_contig11.1270.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=678bp|location=Sequence derived from alignment at P-fluviatile_contig11:3160048..3160725+ (Porterinema fluviatile SAG_2381)
AACATGAGGCTCTGGGTACCGCAGGTGGGATTGTCCCTCCTCGTTGCACC
AGCCAAGAGCTATGTATTACGGCCAGTATCCATTCCCCAGCACGTTGTTC
TTGGCAGCAACGGCGATGGTGGGTGCGGCCCAGTAAGACCACGAGGACCG
TTAACATCAACAACAAAAGCACCGAAACCGAGATGTTCCACCTCGGCGCC
GCGTCGCACCGCCCCTGGCCATCTTAGTGCCCGGGCAGATGAGAATTCCG
GGCGTGAGCACGACGACGGCTTCGCTTCGCTGGACGACCTGCTTGGCGTG
GACATGGACCCGTCTGGCGGTCTCGAGGATCCAACGCTTGAGTTTCGACC
ACCGCCGCTTTCGCGACGGCCATCTTCGGCGGGCGTAGGCAGGGTGGTGT
CGGATGCGTGGCTTGACGAACTGTTGGATGCGGACAACGAGGAACCGAGC
ACCTCTATTAACGGCGGCACTTCCTCCCCCAAAGCCATATTTCCTTCGTC
TGCTGCCGGCGGCATCCTCGAATCCTTGATAGACGATGTGACCGCCGTGG
ACAGGAGAGACGGCCCTCGCGCCGCCGCCGCCTCGACAGCCGCTGCCGCG
CCAAGCGCCGTTGCAGATCCGCCGGCCGCCGACACGGCGGCAGCCCTTGA
CGACTGGCTGAACGAGCTACTAGATGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3160048..3160725+

>mRNA_P-fluviatile_contig11.1270.1 ID=mRNA_P-fluviatile_contig11.1270.1|Name=mRNA_P-fluviatile_contig11.1270.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1350bp|location=Sequence derived from alignment at P-fluviatile_contig11:3160048..3160725+ (Porterinema fluviatile SAG_2381)
ATGAGGCTCTGGGTACCGCAGGTGGGATTGTCCCTCCTCGTTGCACCAGC
CAAGAGCTATGTATTACGGCCAGTATCCATTCCCCAGCACGTTGTTCTTG
GCAGCAACGGCGATGGTGGGTGCGGCCCAGTAAGACCACGAGGACCGTTA
ACATCAACAACAAAAGCACCGAAACCGAGATGTTCCACCTCGGCGCCGCG
TCGCACCGCCCCTGGCCATCTTAGTGCCCGGGCAGATGAGAATTCCGGGC
GTGAGCACGACGACGGCTTCGCTTCGCTGGACGACCTGCTTGGCGTGGAC
ATGGACCCGTCTGGCGGTCTCGAGGATCCAACGCTTGAGTTTCGACCACC
GCCGCTTTCGCGACGGCCATCTTCGGCGGGCGTAGGCAGGGTGGTGTCGG
ATGCGTGGCTTGACGAACTGTTGGATGCGGACAACGAGGAACCGAGCACC
TCTATTAACGGCGGCACTTCCTCCCCCAAAGCCATATTTCCTTCGTCTGC
TGCCGGCGGCATCCTCGAATCCTTGATAGACGATGTGACCGCCGTGGACA
GGAGAGACGGCCCTCGCGCCGCCGCCGCCTCGACAGCCGCTGCCGCGCCA
AGCGCCGTTGCAGATCCGCCGGCCGCCGACACGGCGGCAGCCCTTGACGA
CTGGCTGAACGAGCTACTAGATGAAATGAGGCTCTGGGTACCGCAGGTGG
GATTGTCCCTCCTCGTTGCACCAGCCAAGAGCTATGTATTACGGCCAGTA
TCCATTCCCCAGCACGTTGTTCTTGGCAGCAACGGCGATGGTGGGTGCGG
CCCAGTAAGACCACGAGGACCGTTAACATCAACAACAAAAGCACCGAAAC
CGAGATGTTCCACCTCGGCGCCGCGTCGCACCGCCCCTGGCCATCTTAGT
GCCCGGGCAGATGAGAATTCCGGGCGTGAGCACGACGACGGCTTCGCTTC
GCTGGACGACCTGCTTGGCGTGGACATGGACCCGTCTGGCGGTCTCGAGG
ATCCAACGCTTGAGTTTCGACCACCGCCGCTTTCGCGACGGCCATCTTCG
GCGGGCGTAGGCAGGGTGGTGTCGGATGCGTGGCTTGACGAACTGTTGGA
TGCGGACAACGAGGAACCGAGCACCTCTATTAACGGCGGCACTTCCTCCC
CCAAAGCCATATTTCCTTCGTCTGCTGCCGGCGGCATCCTCGAATCCTTG
ATAGACGATGTGACCGCCGTGGACAGGAGAGACGGCCCTCGCGCCGCCGC
CGCCTCGACAGCCGCTGCCGCGCCAAGCGCCGTTGCAGATCCGCCGGCCG
CCGACACGGCGGCAGCCCTTGACGACTGGCTGAACGAGCTACTAGATGAA
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